HEADER SIGNALING PROTEIN 24-MAY-17 5O3P TITLE CARBON REGULATORY PII-LIKE PROTEIN SBTB FROM SYNECHOCYSTIS SP. 6803 IN TITLE 2 APO STATE, TRIGONAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED PROTEIN SLR1513; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SBTB PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 GENE: SLR1513; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PASK-IBA3C KEYWDS SBTB, CARBON SENSING, PII-LIKE, CYANOBACTERIA, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.A.SELIM,R.ALBRECHT,K.FORCHHAMMER,M.D.HARTMANN REVDAT 3 17-JAN-24 5O3P 1 REMARK REVDAT 2 30-MAY-18 5O3P 1 JRNL REVDAT 1 16-MAY-18 5O3P 0 JRNL AUTH K.A.SELIM,F.HAASE,M.D.HARTMANN,M.HAGEMANN,K.FORCHHAMMER JRNL TITL PII-LIKE SIGNALING PROTEIN SBTB LINKS CAMP SENSING WITH JRNL TITL 2 CYANOBACTERIAL INORGANIC CARBON RESPONSE. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E4861 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29735650 JRNL DOI 10.1073/PNAS.1803790115 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1898 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2614 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2256 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -1.40000 REMARK 3 B12 (A**2) : 0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.409 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2388 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2340 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3211 ; 1.980 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5419 ; 0.922 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 6.190 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;37.962 ;25.393 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;13.517 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;28.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2627 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 477 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1215 ; 2.469 ; 2.656 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1214 ; 2.455 ; 2.654 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1518 ; 3.239 ; 3.951 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1519 ; 3.238 ; 3.953 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1173 ; 3.772 ; 3.094 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1173 ; 3.772 ; 3.094 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1692 ; 5.397 ; 4.446 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2688 ; 7.837 ;22.986 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2621 ; 7.794 ;22.442 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4477 22.7818 -1.6298 REMARK 3 T TENSOR REMARK 3 T11: 0.0527 T22: 0.0521 REMARK 3 T33: 0.0283 T12: 0.0318 REMARK 3 T13: -0.0285 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 3.5731 L22: 2.9623 REMARK 3 L33: 2.6978 L12: 0.7638 REMARK 3 L13: -0.8906 L23: -0.2040 REMARK 3 S TENSOR REMARK 3 S11: 0.0616 S12: 0.1821 S13: 0.0711 REMARK 3 S21: -0.2521 S22: 0.0328 S23: 0.2513 REMARK 3 S31: -0.1098 S32: -0.3138 S33: -0.0944 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7080 8.4614 7.7620 REMARK 3 T TENSOR REMARK 3 T11: 0.0118 T22: 0.0210 REMARK 3 T33: 0.0217 T12: -0.0099 REMARK 3 T13: -0.0131 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 3.3172 L22: 3.5033 REMARK 3 L33: 1.8740 L12: -1.0183 REMARK 3 L13: 0.1010 L23: -0.4381 REMARK 3 S TENSOR REMARK 3 S11: 0.0698 S12: -0.2141 S13: -0.1330 REMARK 3 S21: -0.0114 S22: 0.0251 S23: 0.1347 REMARK 3 S31: 0.0096 S32: -0.0909 S33: -0.0950 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 114 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1454 18.2996 -4.4784 REMARK 3 T TENSOR REMARK 3 T11: 0.0089 T22: 0.0120 REMARK 3 T33: 0.0382 T12: -0.0070 REMARK 3 T13: 0.0059 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.3352 L22: 2.6881 REMARK 3 L33: 5.1123 L12: -0.4360 REMARK 3 L13: 0.0342 L23: -2.3402 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.0016 S13: -0.1305 REMARK 3 S21: -0.0660 S22: -0.0287 S23: -0.1552 REMARK 3 S31: -0.0319 S32: 0.2013 S33: 0.0107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38551 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 33.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.14 REMARK 200 R MERGE FOR SHELL (I) : 0.79600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3DFE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION CONTAINING 19 MG/ML REMARK 280 SBTB IN 50 MM TRIS.HCL (PH 8.0), 250 MM NACL MIXED 1:1 WITH REMARK 280 RESERVOIR SOLUTION COMPOSED OF 0.1 M PHOSPHATE-CITRATE PH 4.2, REMARK 280 AND 40 % (W/V) PEG300., VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.01333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.50667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 42 REMARK 465 ARG A 43 REMARK 465 ASN A 44 REMARK 465 VAL A 45 REMARK 465 ARG A 46 REMARK 465 SER A 47 REMARK 465 SER A 48 REMARK 465 GLY A 49 REMARK 465 GLN A 50 REMARK 465 PRO A 51 REMARK 465 ASN A 52 REMARK 465 THR A 53 REMARK 465 SER A 54 REMARK 465 ALA A 112 REMARK 465 TRP A 113 REMARK 465 SER A 114 REMARK 465 HIS A 115 REMARK 465 PRO A 116 REMARK 465 GLN A 117 REMARK 465 PHE A 118 REMARK 465 GLU A 119 REMARK 465 LYS A 120 REMARK 465 MET B 1 REMARK 465 SER B 42 REMARK 465 ARG B 43 REMARK 465 ASN B 44 REMARK 465 VAL B 45 REMARK 465 ARG B 46 REMARK 465 SER B 47 REMARK 465 SER B 48 REMARK 465 GLY B 49 REMARK 465 GLN B 50 REMARK 465 PRO B 51 REMARK 465 ASN B 52 REMARK 465 THR B 53 REMARK 465 HIS B 115 REMARK 465 PRO B 116 REMARK 465 GLN B 117 REMARK 465 PHE B 118 REMARK 465 GLU B 119 REMARK 465 LYS B 120 REMARK 465 MET C 1 REMARK 465 SER C 42 REMARK 465 ARG C 43 REMARK 465 ASN C 44 REMARK 465 VAL C 45 REMARK 465 ARG C 46 REMARK 465 SER C 47 REMARK 465 SER C 48 REMARK 465 GLY C 49 REMARK 465 GLN C 50 REMARK 465 PRO C 51 REMARK 465 ASN C 52 REMARK 465 THR C 53 REMARK 465 SER C 54 REMARK 465 ASP C 55 REMARK 465 HIS C 115 REMARK 465 PRO C 116 REMARK 465 GLN C 117 REMARK 465 PHE C 118 REMARK 465 GLU C 119 REMARK 465 LYS C 120 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CD CE NZ REMARK 470 ASP A 55 CG OD1 OD2 REMARK 470 LYS A 82 CD CE NZ REMARK 470 LYS B 18 CE NZ REMARK 470 LYS B 40 CE NZ REMARK 470 LYS C 18 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 94 CA - CB - SG ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS C 110 38.01 -92.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE C 200 DBREF 5O3P A 1 110 UNP P73954 Y1513_SYNY3 1 110 DBREF 5O3P B 1 110 UNP P73954 Y1513_SYNY3 1 110 DBREF 5O3P C 1 110 UNP P73954 Y1513_SYNY3 1 110 SEQADV 5O3P SER A 111 UNP P73954 EXPRESSION TAG SEQADV 5O3P ALA A 112 UNP P73954 EXPRESSION TAG SEQADV 5O3P TRP A 113 UNP P73954 EXPRESSION TAG SEQADV 5O3P SER A 114 UNP P73954 EXPRESSION TAG SEQADV 5O3P HIS A 115 UNP P73954 EXPRESSION TAG SEQADV 5O3P PRO A 116 UNP P73954 EXPRESSION TAG SEQADV 5O3P GLN A 117 UNP P73954 EXPRESSION TAG SEQADV 5O3P PHE A 118 UNP P73954 EXPRESSION TAG SEQADV 5O3P GLU A 119 UNP P73954 EXPRESSION TAG SEQADV 5O3P LYS A 120 UNP P73954 EXPRESSION TAG SEQADV 5O3P SER B 111 UNP P73954 EXPRESSION TAG SEQADV 5O3P ALA B 112 UNP P73954 EXPRESSION TAG SEQADV 5O3P TRP B 113 UNP P73954 EXPRESSION TAG SEQADV 5O3P SER B 114 UNP P73954 EXPRESSION TAG SEQADV 5O3P HIS B 115 UNP P73954 EXPRESSION TAG SEQADV 5O3P PRO B 116 UNP P73954 EXPRESSION TAG SEQADV 5O3P GLN B 117 UNP P73954 EXPRESSION TAG SEQADV 5O3P PHE B 118 UNP P73954 EXPRESSION TAG SEQADV 5O3P GLU B 119 UNP P73954 EXPRESSION TAG SEQADV 5O3P LYS B 120 UNP P73954 EXPRESSION TAG SEQADV 5O3P SER C 111 UNP P73954 EXPRESSION TAG SEQADV 5O3P ALA C 112 UNP P73954 EXPRESSION TAG SEQADV 5O3P TRP C 113 UNP P73954 EXPRESSION TAG SEQADV 5O3P SER C 114 UNP P73954 EXPRESSION TAG SEQADV 5O3P HIS C 115 UNP P73954 EXPRESSION TAG SEQADV 5O3P PRO C 116 UNP P73954 EXPRESSION TAG SEQADV 5O3P GLN C 117 UNP P73954 EXPRESSION TAG SEQADV 5O3P PHE C 118 UNP P73954 EXPRESSION TAG SEQADV 5O3P GLU C 119 UNP P73954 EXPRESSION TAG SEQADV 5O3P LYS C 120 UNP P73954 EXPRESSION TAG SEQRES 1 A 120 MET ALA LYS PRO ALA ASN LYS LEU VAL ILE VAL THR GLU SEQRES 2 A 120 LYS ILE LEU LEU LYS LYS ILE ALA LYS ILE ILE ASP GLU SEQRES 3 A 120 SER GLY ALA LYS GLY TYR THR VAL MET ASN THR GLY GLY SEQRES 4 A 120 LYS GLY SER ARG ASN VAL ARG SER SER GLY GLN PRO ASN SEQRES 5 A 120 THR SER ASP ILE GLU ALA ASN ILE LYS PHE GLU ILE LEU SEQRES 6 A 120 THR GLU THR ARG GLU MET ALA GLU GLU ILE ALA ASP ARG SEQRES 7 A 120 VAL ALA VAL LYS TYR PHE ASN ASP TYR ALA GLY ILE ILE SEQRES 8 A 120 TYR ILE CYS SER ALA GLU VAL LEU TYR GLY HIS THR PHE SEQRES 9 A 120 CYS GLY PRO GLU GLY CYS SER ALA TRP SER HIS PRO GLN SEQRES 10 A 120 PHE GLU LYS SEQRES 1 B 120 MET ALA LYS PRO ALA ASN LYS LEU VAL ILE VAL THR GLU SEQRES 2 B 120 LYS ILE LEU LEU LYS LYS ILE ALA LYS ILE ILE ASP GLU SEQRES 3 B 120 SER GLY ALA LYS GLY TYR THR VAL MET ASN THR GLY GLY SEQRES 4 B 120 LYS GLY SER ARG ASN VAL ARG SER SER GLY GLN PRO ASN SEQRES 5 B 120 THR SER ASP ILE GLU ALA ASN ILE LYS PHE GLU ILE LEU SEQRES 6 B 120 THR GLU THR ARG GLU MET ALA GLU GLU ILE ALA ASP ARG SEQRES 7 B 120 VAL ALA VAL LYS TYR PHE ASN ASP TYR ALA GLY ILE ILE SEQRES 8 B 120 TYR ILE CYS SER ALA GLU VAL LEU TYR GLY HIS THR PHE SEQRES 9 B 120 CYS GLY PRO GLU GLY CYS SER ALA TRP SER HIS PRO GLN SEQRES 10 B 120 PHE GLU LYS SEQRES 1 C 120 MET ALA LYS PRO ALA ASN LYS LEU VAL ILE VAL THR GLU SEQRES 2 C 120 LYS ILE LEU LEU LYS LYS ILE ALA LYS ILE ILE ASP GLU SEQRES 3 C 120 SER GLY ALA LYS GLY TYR THR VAL MET ASN THR GLY GLY SEQRES 4 C 120 LYS GLY SER ARG ASN VAL ARG SER SER GLY GLN PRO ASN SEQRES 5 C 120 THR SER ASP ILE GLU ALA ASN ILE LYS PHE GLU ILE LEU SEQRES 6 C 120 THR GLU THR ARG GLU MET ALA GLU GLU ILE ALA ASP ARG SEQRES 7 C 120 VAL ALA VAL LYS TYR PHE ASN ASP TYR ALA GLY ILE ILE SEQRES 8 C 120 TYR ILE CYS SER ALA GLU VAL LEU TYR GLY HIS THR PHE SEQRES 9 C 120 CYS GLY PRO GLU GLY CYS SER ALA TRP SER HIS PRO GLN SEQRES 10 C 120 PHE GLU LYS HET 1PE A 200 16 HET PEG B 201 7 HET 1PE C 200 16 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN 1PE PEG400 FORMUL 4 1PE 2(C10 H22 O6) FORMUL 5 PEG C4 H10 O3 FORMUL 7 HOH *178(H2 O) HELIX 1 AA1 LEU A 16 SER A 27 1 12 HELIX 2 AA2 THR A 68 PHE A 84 1 17 HELIX 3 AA3 GLY A 101 GLY A 106 1 6 HELIX 4 AA4 LEU B 16 SER B 27 1 12 HELIX 5 AA5 THR B 68 PHE B 84 1 17 HELIX 6 AA6 HIS B 102 GLY B 106 1 5 HELIX 7 AA7 LEU C 16 SER C 27 1 12 HELIX 8 AA8 THR C 68 PHE C 84 1 17 HELIX 9 AA9 HIS C 102 GLY C 106 1 5 SHEET 1 A 4 GLY A 89 VAL A 98 0 SHEET 2 A 4 LYS A 3 THR A 12 -1 N VAL A 11 O ILE A 90 SHEET 3 A 4 GLU A 57 THR A 66 -1 N THR A 66 O ASN A 6 SHEET 4 A 4 THR A 33 GLY A 39 -1 N GLY A 39 O GLU A 57 SHEET 1 B 4 GLY B 89 VAL B 98 0 SHEET 2 B 4 LYS B 3 GLU B 13 -1 N VAL B 11 O ILE B 90 SHEET 3 B 4 GLU B 57 THR B 66 -1 N THR B 66 O ASN B 6 SHEET 4 B 4 THR B 33 GLY B 39 -1 N GLY B 39 O GLU B 57 SHEET 1 C 4 GLY C 89 VAL C 98 0 SHEET 2 C 4 LYS C 3 THR C 12 -1 N VAL C 11 O ILE C 90 SHEET 3 C 4 GLU C 57 THR C 66 -1 N THR C 66 O ASN C 6 SHEET 4 C 4 THR C 33 GLY C 39 -1 N GLY C 39 O GLU C 57 SSBOND 1 CYS A 105 CYS A 110 1555 1555 2.01 SSBOND 2 CYS B 105 CYS B 110 1555 1555 1.97 SSBOND 3 CYS C 105 CYS C 110 1555 1555 2.02 SITE 1 AC1 11 GLY A 39 LYS A 40 GLU A 57 ASN A 59 SITE 2 AC1 11 ALA A 88 GLY A 89 HOH A 301 TYR B 32 SITE 3 AC1 11 THR B 33 GLU B 63 HOH B 317 SITE 1 AC2 9 THR A 33 GLU A 63 VAL C 11 GLY C 39 SITE 2 AC2 9 LYS C 40 ASN C 59 ALA C 88 HOH C 302 SITE 3 AC2 9 HOH C 338 CRYST1 64.351 64.351 82.520 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015540 0.008972 0.000000 0.00000 SCALE2 0.000000 0.017944 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012118 0.00000