HEADER SIGNALING PROTEIN 24-MAY-17 5O3Q TITLE CARBON REGULATORY PII-LIKE PROTEIN SBTB FROM SYNECHOCYSTIS SP. 6803 IN TITLE 2 COMPLEX WITH CYCLIC AMP (CAMP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED PROTEIN SLR1513; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SBTB PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. (STRAIN PCC 6803 / KAZUSA); SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC 6803 / KAZUSA; SOURCE 5 GENE: SLR1513; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PASK-IBA3-C KEYWDS SBTB, CARBON SENSING, PII-LIKE, CYANOBACTERIA, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.A.SELIM,R.ALBRECHT,K.FORCHHAMMER,M.D.HARTMANN REVDAT 3 17-JAN-24 5O3Q 1 REMARK REVDAT 2 30-MAY-18 5O3Q 1 JRNL REVDAT 1 16-MAY-18 5O3Q 0 JRNL AUTH K.A.SELIM,F.HAASE,M.D.HARTMANN,M.HAGEMANN,K.FORCHHAMMER JRNL TITL PII-LIKE SIGNALING PROTEIN SBTB LINKS CAMP SENSING WITH JRNL TITL 2 CYANOBACTERIAL INORGANIC CARBON RESPONSE. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E4861 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29735650 JRNL DOI 10.1073/PNAS.1803790115 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1901 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2649 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2245 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2421 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2334 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3292 ; 2.130 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5398 ; 0.924 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 6.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;38.305 ;25.233 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 427 ;14.659 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;34.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 384 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2647 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 494 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1209 ; 2.299 ; 2.548 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1208 ; 2.299 ; 2.546 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1506 ; 3.107 ; 3.794 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1507 ; 3.106 ; 3.796 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1212 ; 3.276 ; 2.875 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1210 ; 3.264 ; 2.869 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1775 ; 4.797 ; 4.157 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2808 ; 7.376 ;22.034 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2743 ; 7.378 ;21.480 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): -14.2521 22.6338 -1.4547 REMARK 3 T TENSOR REMARK 3 T11: 0.0721 T22: 0.0976 REMARK 3 T33: 0.0553 T12: 0.0490 REMARK 3 T13: -0.0440 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.8877 L22: 3.9101 REMARK 3 L33: 2.3544 L12: 0.7697 REMARK 3 L13: -0.5728 L23: -0.0200 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: 0.0817 S13: 0.0230 REMARK 3 S21: -0.2357 S22: 0.0300 S23: 0.3920 REMARK 3 S31: -0.1538 S32: -0.3455 S33: -0.0615 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 200 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3670 8.3689 7.5847 REMARK 3 T TENSOR REMARK 3 T11: 0.0510 T22: 0.0386 REMARK 3 T33: 0.0218 T12: -0.0016 REMARK 3 T13: -0.0187 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.3327 L22: 3.4459 REMARK 3 L33: 2.0380 L12: -0.7133 REMARK 3 L13: 0.1452 L23: -0.9095 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.1447 S13: -0.0840 REMARK 3 S21: 0.1396 S22: 0.1009 S23: 0.1548 REMARK 3 S31: 0.0365 S32: -0.0664 S33: -0.0901 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 201 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0654 18.0861 -4.4462 REMARK 3 T TENSOR REMARK 3 T11: 0.0452 T22: 0.0239 REMARK 3 T33: 0.0398 T12: -0.0266 REMARK 3 T13: 0.0027 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.6680 L22: 3.4780 REMARK 3 L33: 5.3870 L12: -0.2372 REMARK 3 L13: 0.0262 L23: -2.1952 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0299 S13: -0.1364 REMARK 3 S21: -0.0661 S22: 0.0237 S23: -0.2311 REMARK 3 S31: -0.0558 S32: 0.1774 S33: -0.0259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38069 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 32.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.160 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.04 REMARK 200 R MERGE FOR SHELL (I) : 0.96100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5O3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION CONTAINING 19 MG/ML REMARK 280 SBTB IN 50 MM TRIS.HCL (PH 8.0), 250 MM NACL, 2MM CAMP MIXED 1:1 REMARK 280 WITH RESERVOIR SOLUTION OF MOLECULAR DIMENSIONS MORPHEUS SCREEN REMARK 280 CONDITION G2, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.30600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.15300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 42 REMARK 465 ARG A 43 REMARK 465 ASN A 44 REMARK 465 VAL A 45 REMARK 465 ARG A 46 REMARK 465 SER A 47 REMARK 465 SER A 48 REMARK 465 GLY A 49 REMARK 465 GLN A 50 REMARK 465 PRO A 51 REMARK 465 ASN A 52 REMARK 465 THR A 53 REMARK 465 ALA A 112 REMARK 465 TRP A 113 REMARK 465 SER A 114 REMARK 465 HIS A 115 REMARK 465 PRO A 116 REMARK 465 GLN A 117 REMARK 465 PHE A 118 REMARK 465 GLU A 119 REMARK 465 LYS A 120 REMARK 465 MET B 1 REMARK 465 SER B 42 REMARK 465 ARG B 43 REMARK 465 ASN B 44 REMARK 465 VAL B 45 REMARK 465 ARG B 46 REMARK 465 SER B 47 REMARK 465 SER B 48 REMARK 465 GLY B 49 REMARK 465 GLN B 50 REMARK 465 PRO B 51 REMARK 465 ASN B 52 REMARK 465 THR B 53 REMARK 465 HIS B 115 REMARK 465 PRO B 116 REMARK 465 GLN B 117 REMARK 465 PHE B 118 REMARK 465 GLU B 119 REMARK 465 LYS B 120 REMARK 465 MET C 1 REMARK 465 SER C 42 REMARK 465 ARG C 43 REMARK 465 ASN C 44 REMARK 465 VAL C 45 REMARK 465 ARG C 46 REMARK 465 SER C 47 REMARK 465 SER C 48 REMARK 465 GLY C 49 REMARK 465 GLN C 50 REMARK 465 PRO C 51 REMARK 465 ASN C 52 REMARK 465 THR C 53 REMARK 465 SER C 54 REMARK 465 ASP C 55 REMARK 465 HIS C 115 REMARK 465 PRO C 116 REMARK 465 GLN C 117 REMARK 465 PHE C 118 REMARK 465 GLU C 119 REMARK 465 LYS C 120 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CD CE NZ REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 SER A 54 OG REMARK 470 LYS A 82 CD CE NZ REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 LYS B 18 CD CE NZ REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 LYS C 18 CE NZ REMARK 470 GLU C 67 CG CD OE1 OE2 REMARK 470 GLU C 108 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 78 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS C 110 33.55 -86.24 REMARK 500 SER C 111 69.14 34.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT C 201 DBREF 5O3Q A 1 110 UNP P73954 Y1513_SYNY3 1 110 DBREF 5O3Q B 1 110 UNP P73954 Y1513_SYNY3 1 110 DBREF 5O3Q C 1 110 UNP P73954 Y1513_SYNY3 1 110 SEQADV 5O3Q SER A 111 UNP P73954 EXPRESSION TAG SEQADV 5O3Q ALA A 112 UNP P73954 EXPRESSION TAG SEQADV 5O3Q TRP A 113 UNP P73954 EXPRESSION TAG SEQADV 5O3Q SER A 114 UNP P73954 EXPRESSION TAG SEQADV 5O3Q HIS A 115 UNP P73954 EXPRESSION TAG SEQADV 5O3Q PRO A 116 UNP P73954 EXPRESSION TAG SEQADV 5O3Q GLN A 117 UNP P73954 EXPRESSION TAG SEQADV 5O3Q PHE A 118 UNP P73954 EXPRESSION TAG SEQADV 5O3Q GLU A 119 UNP P73954 EXPRESSION TAG SEQADV 5O3Q LYS A 120 UNP P73954 EXPRESSION TAG SEQADV 5O3Q SER B 111 UNP P73954 EXPRESSION TAG SEQADV 5O3Q ALA B 112 UNP P73954 EXPRESSION TAG SEQADV 5O3Q TRP B 113 UNP P73954 EXPRESSION TAG SEQADV 5O3Q SER B 114 UNP P73954 EXPRESSION TAG SEQADV 5O3Q HIS B 115 UNP P73954 EXPRESSION TAG SEQADV 5O3Q PRO B 116 UNP P73954 EXPRESSION TAG SEQADV 5O3Q GLN B 117 UNP P73954 EXPRESSION TAG SEQADV 5O3Q PHE B 118 UNP P73954 EXPRESSION TAG SEQADV 5O3Q GLU B 119 UNP P73954 EXPRESSION TAG SEQADV 5O3Q LYS B 120 UNP P73954 EXPRESSION TAG SEQADV 5O3Q SER C 111 UNP P73954 EXPRESSION TAG SEQADV 5O3Q ALA C 112 UNP P73954 EXPRESSION TAG SEQADV 5O3Q TRP C 113 UNP P73954 EXPRESSION TAG SEQADV 5O3Q SER C 114 UNP P73954 EXPRESSION TAG SEQADV 5O3Q HIS C 115 UNP P73954 EXPRESSION TAG SEQADV 5O3Q PRO C 116 UNP P73954 EXPRESSION TAG SEQADV 5O3Q GLN C 117 UNP P73954 EXPRESSION TAG SEQADV 5O3Q PHE C 118 UNP P73954 EXPRESSION TAG SEQADV 5O3Q GLU C 119 UNP P73954 EXPRESSION TAG SEQADV 5O3Q LYS C 120 UNP P73954 EXPRESSION TAG SEQRES 1 A 120 MET ALA LYS PRO ALA ASN LYS LEU VAL ILE VAL THR GLU SEQRES 2 A 120 LYS ILE LEU LEU LYS LYS ILE ALA LYS ILE ILE ASP GLU SEQRES 3 A 120 SER GLY ALA LYS GLY TYR THR VAL MET ASN THR GLY GLY SEQRES 4 A 120 LYS GLY SER ARG ASN VAL ARG SER SER GLY GLN PRO ASN SEQRES 5 A 120 THR SER ASP ILE GLU ALA ASN ILE LYS PHE GLU ILE LEU SEQRES 6 A 120 THR GLU THR ARG GLU MET ALA GLU GLU ILE ALA ASP ARG SEQRES 7 A 120 VAL ALA VAL LYS TYR PHE ASN ASP TYR ALA GLY ILE ILE SEQRES 8 A 120 TYR ILE CYS SER ALA GLU VAL LEU TYR GLY HIS THR PHE SEQRES 9 A 120 CYS GLY PRO GLU GLY CYS SER ALA TRP SER HIS PRO GLN SEQRES 10 A 120 PHE GLU LYS SEQRES 1 B 120 MET ALA LYS PRO ALA ASN LYS LEU VAL ILE VAL THR GLU SEQRES 2 B 120 LYS ILE LEU LEU LYS LYS ILE ALA LYS ILE ILE ASP GLU SEQRES 3 B 120 SER GLY ALA LYS GLY TYR THR VAL MET ASN THR GLY GLY SEQRES 4 B 120 LYS GLY SER ARG ASN VAL ARG SER SER GLY GLN PRO ASN SEQRES 5 B 120 THR SER ASP ILE GLU ALA ASN ILE LYS PHE GLU ILE LEU SEQRES 6 B 120 THR GLU THR ARG GLU MET ALA GLU GLU ILE ALA ASP ARG SEQRES 7 B 120 VAL ALA VAL LYS TYR PHE ASN ASP TYR ALA GLY ILE ILE SEQRES 8 B 120 TYR ILE CYS SER ALA GLU VAL LEU TYR GLY HIS THR PHE SEQRES 9 B 120 CYS GLY PRO GLU GLY CYS SER ALA TRP SER HIS PRO GLN SEQRES 10 B 120 PHE GLU LYS SEQRES 1 C 120 MET ALA LYS PRO ALA ASN LYS LEU VAL ILE VAL THR GLU SEQRES 2 C 120 LYS ILE LEU LEU LYS LYS ILE ALA LYS ILE ILE ASP GLU SEQRES 3 C 120 SER GLY ALA LYS GLY TYR THR VAL MET ASN THR GLY GLY SEQRES 4 C 120 LYS GLY SER ARG ASN VAL ARG SER SER GLY GLN PRO ASN SEQRES 5 C 120 THR SER ASP ILE GLU ALA ASN ILE LYS PHE GLU ILE LEU SEQRES 6 C 120 THR GLU THR ARG GLU MET ALA GLU GLU ILE ALA ASP ARG SEQRES 7 C 120 VAL ALA VAL LYS TYR PHE ASN ASP TYR ALA GLY ILE ILE SEQRES 8 C 120 TYR ILE CYS SER ALA GLU VAL LEU TYR GLY HIS THR PHE SEQRES 9 C 120 CYS GLY PRO GLU GLY CYS SER ALA TRP SER HIS PRO GLN SEQRES 10 C 120 PHE GLU LYS HET CMP A 200 22 HET CMP B 201 22 HET CMP B 202 22 HET BCT C 201 4 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETNAM BCT BICARBONATE ION HETSYN CMP CYCLIC AMP; CAMP FORMUL 4 CMP 3(C10 H12 N5 O6 P) FORMUL 7 BCT C H O3 1- FORMUL 8 HOH *167(H2 O) HELIX 1 AA1 LEU A 16 SER A 27 1 12 HELIX 2 AA2 THR A 68 PHE A 84 1 17 HELIX 3 AA3 GLY A 101 GLY A 106 1 6 HELIX 4 AA4 LEU B 16 SER B 27 1 12 HELIX 5 AA5 THR B 68 PHE B 84 1 17 HELIX 6 AA6 GLY B 101 GLY B 106 1 6 HELIX 7 AA7 LEU C 16 GLY C 28 1 13 HELIX 8 AA8 THR C 68 PHE C 84 1 17 HELIX 9 AA9 HIS C 102 GLY C 106 1 5 SHEET 1 A 4 GLY A 89 VAL A 98 0 SHEET 2 A 4 LYS A 3 GLU A 13 -1 N VAL A 11 O ILE A 90 SHEET 3 A 4 GLU A 57 THR A 66 -1 N THR A 66 O ASN A 6 SHEET 4 A 4 THR A 33 GLY A 39 -1 N GLY A 39 O GLU A 57 SHEET 1 B 4 GLY B 89 VAL B 98 0 SHEET 2 B 4 LYS B 3 GLU B 13 -1 N VAL B 11 O ILE B 90 SHEET 3 B 4 GLU B 57 THR B 66 -1 N THR B 66 O ASN B 6 SHEET 4 B 4 THR B 33 GLY B 39 -1 N GLY B 39 O GLU B 57 SHEET 1 C 4 GLY C 89 VAL C 98 0 SHEET 2 C 4 LYS C 3 THR C 12 -1 N VAL C 11 O ILE C 90 SHEET 3 C 4 GLU C 57 THR C 66 -1 N THR C 66 O ASN C 6 SHEET 4 C 4 THR C 33 GLY C 39 -1 N GLY C 39 O GLU C 57 SSBOND 1 CYS A 105 CYS A 110 1555 1555 1.98 SSBOND 2 CYS B 105 CYS B 110 1555 1555 1.95 SSBOND 3 CYS C 105 CYS C 110 1555 1555 1.96 SITE 1 AC1 13 GLY A 31 TYR A 32 THR A 33 GLU A 63 SITE 2 AC1 13 LEU A 65 HOH A 320 HOH A 324 VAL C 11 SITE 3 AC1 13 GLY C 39 LYS C 40 ASN C 59 ALA C 88 SITE 4 AC1 13 ILE C 90 SITE 1 AC2 13 VAL A 11 GLY A 39 LYS A 40 ASN A 59 SITE 2 AC2 13 ALA A 88 GLY A 89 ILE A 90 GLY B 31 SITE 3 AC2 13 TYR B 32 THR B 33 GLU B 63 LEU B 65 SITE 4 AC2 13 HOH B 319 SITE 1 AC3 14 VAL B 11 GLY B 39 LYS B 40 GLY B 41 SITE 2 AC3 14 ASN B 59 ALA B 88 ILE B 90 HOH B 303 SITE 3 AC3 14 HOH B 336 GLY C 31 TYR C 32 THR C 33 SITE 4 AC3 14 GLU C 63 LEU C 65 SITE 1 AC4 4 VAL B 81 ASN B 85 LEU C 17 ASN C 36 CRYST1 64.386 64.386 81.459 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015531 0.008967 0.000000 0.00000 SCALE2 0.000000 0.017934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012276 0.00000