HEADER OXIDOREDUCTASE 25-MAY-17 5O3Y TITLE SOD1 BOUND TO EBSULFUR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, F; COMPND 4 SYNONYM: SUPEROXIDE DISMUTASE 1,HSOD1; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS OXIDOREDUCTASE DRUG DISCOVERY ALS MND, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.CAPPER,G.S.A.WRIGHT,S.V.ANTONYUK,S.S.HASNAIN REVDAT 4 17-JAN-24 5O3Y 1 REMARK LINK REVDAT 3 20-FEB-19 5O3Y 1 LINK REVDAT 2 27-JUN-18 5O3Y 1 JRNL REVDAT 1 13-JUN-18 5O3Y 0 JRNL AUTH M.J.CAPPER,G.S.A.WRIGHT,L.BARBIERI,E.LUCHINAT,E.MERCATELLI, JRNL AUTH 2 L.MCALARY,J.J.YERBURY,P.M.O'NEILL,S.V.ANTONYUK,L.BANCI, JRNL AUTH 3 S.S.HASNAIN JRNL TITL THE CYSTEINE-REACTIVE SMALL MOLECULE EBSELEN FACILITATES JRNL TITL 2 EFFECTIVE SOD1 MATURATION. JRNL REF NAT COMMUN V. 9 1693 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29703933 JRNL DOI 10.1038/S41467-018-04114-X REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 57561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2943 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4198 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.328 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2377 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2086 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3239 ; 1.425 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4836 ; 1.541 ; 2.998 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 6.475 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;38.755 ;24.947 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 349 ;11.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;10.068 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2806 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 472 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1277 ; 1.434 ; 1.312 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1276 ; 1.424 ; 1.312 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1612 ; 1.999 ; 1.987 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1613 ; 2.001 ; 1.987 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 2.004 ; 1.555 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1097 ; 2.002 ; 1.555 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1622 ; 2.515 ; 2.238 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2593 ; 5.305 ;18.654 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2525 ; 4.345 ;17.701 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4451 ; 3.541 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 181 ;30.637 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4519 ;12.458 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60537 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 67.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2V0A REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NAACT PH 3.75, 100 MM NACL, 2.8 REMARK 280 M AMSO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.98000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 9 CD CE NZ REMARK 480 LYS A 23 CD CE NZ REMARK 480 GLU A 24 CD OE1 OE2 REMARK 480 SER A 25 OG REMARK 480 LYS A 30 CD CE NZ REMARK 480 LYS A 70 CE NZ REMARK 480 GLU A 100 CD OE1 OE2 REMARK 480 LYS A 128 CE NZ REMARK 480 GLU A 132 CD OE1 OE2 REMARK 480 GLU A 133 CD OE1 OE2 REMARK 480 LYS A 136 CD CE NZ REMARK 480 LYS F 3 CD CE NZ REMARK 480 LYS F 23 CD CE NZ REMARK 480 ASN F 26 CG OD1 ND2 REMARK 480 LYS F 30 CG CD CE NZ REMARK 480 LYS F 36 CE NZ REMARK 480 LYS F 70 CE NZ REMARK 480 LYS F 75 CD CE NZ REMARK 480 GLU F 77 CD OE1 OE2 REMARK 480 GLU F 132 CG CD OE1 OE2 REMARK 480 LYS F 136 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS F 3 O HOH F 601 1.26 REMARK 500 CE LYS F 3 O HOH F 601 1.41 REMARK 500 OD1 ASN F 26 O HOH F 602 1.95 REMARK 500 O HOH F 669 O HOH F 694 2.01 REMARK 500 O HOH A 663 O HOH A 725 2.07 REMARK 500 NH2 ARG A 69 OE1 GLU A 78 2.12 REMARK 500 CG ASN F 26 O HOH F 602 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 118.8 REMARK 620 3 HIS A 120 NE2 98.4 121.6 REMARK 620 4 SO4 A 504 O4 104.6 108.2 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 102.9 REMARK 620 3 HIS A 80 ND1 108.9 123.6 REMARK 620 4 ASP A 83 OD1 105.5 98.0 115.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 46 ND1 REMARK 620 2 HIS F 48 NE2 116.7 REMARK 620 3 HIS F 120 NE2 98.3 124.2 REMARK 620 4 SO4 F 504 O1 104.8 108.3 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 63 ND1 REMARK 620 2 HIS F 71 ND1 102.5 REMARK 620 3 HIS F 80 ND1 110.4 121.8 REMARK 620 4 ASP F 83 OD1 106.8 96.9 116.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9JK A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG F 69 and GLU F REMARK 800 78 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 9JK F 503 and CYS F REMARK 800 111 DBREF 5O3Y A 1 153 UNP P00441 SODC_HUMAN 2 154 DBREF 5O3Y F 1 153 UNP P00441 SODC_HUMAN 2 154 SEQRES 1 A 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 A 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 A 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 A 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 F 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 F 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 F 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 F 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 F 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 F 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 F 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 F 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 F 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 F 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 F 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 F 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET ZN A 501 1 HET 9JK A 502 16 HET ZN A 503 1 HET SO4 A 504 5 HET ZN F 501 1 HET ZN F 502 1 HET 9JK F 503 16 HET SO4 F 504 5 HETNAM ZN ZINC ION HETNAM 9JK ~{N}-PHENYL-2-SULFANYL-BENZAMIDE HETNAM SO4 SULFATE ION FORMUL 3 ZN 4(ZN 2+) FORMUL 4 9JK 2(C13 H11 N O S) FORMUL 6 SO4 2(O4 S 2-) FORMUL 11 HOH *313(H2 O) HELIX 1 AA1 ALA A 55 GLY A 61 5 7 HELIX 2 AA2 ASN A 131 LYS A 136 5 6 HELIX 3 AA3 ALA F 55 GLY F 61 5 7 HELIX 4 AA4 SER F 107 CYS F 111 5 5 HELIX 5 AA5 ASN F 131 LYS F 136 5 6 SHEET 1 AA1 5 ALA A 95 ASP A 101 0 SHEET 2 AA1 5 VAL A 29 LYS A 36 -1 N ILE A 35 O ALA A 95 SHEET 3 AA1 5 GLN A 15 GLN A 22 -1 N ASN A 19 O TRP A 32 SHEET 4 AA1 5 THR A 2 LEU A 8 -1 N THR A 2 O GLN A 22 SHEET 5 AA1 5 GLY A 150 ALA A 152 -1 O GLY A 150 N VAL A 5 SHEET 1 AA2 4 ASP A 83 ALA A 89 0 SHEET 2 AA2 4 GLY A 41 HIS A 48 -1 N GLY A 41 O ALA A 89 SHEET 3 AA2 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 AA2 4 ARG A 143 VAL A 148 -1 O ALA A 145 N VAL A 119 SHEET 1 AA3 5 ALA F 95 ASP F 101 0 SHEET 2 AA3 5 VAL F 29 LYS F 36 -1 N VAL F 31 O ILE F 99 SHEET 3 AA3 5 VAL F 14 GLN F 22 -1 N ASN F 19 O TRP F 32 SHEET 4 AA3 5 THR F 2 GLY F 10 -1 N THR F 2 O GLN F 22 SHEET 5 AA3 5 GLY F 150 ILE F 151 -1 O GLY F 150 N VAL F 5 SHEET 1 AA4 4 ASP F 83 ALA F 89 0 SHEET 2 AA4 4 GLY F 41 HIS F 48 -1 N GLY F 41 O ALA F 89 SHEET 3 AA4 4 THR F 116 HIS F 120 -1 O THR F 116 N HIS F 48 SHEET 4 AA4 4 ARG F 143 VAL F 148 -1 O ALA F 145 N VAL F 119 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.11 SSBOND 2 CYS F 57 CYS F 146 1555 1555 2.09 LINK SG CYS A 111 S01 9JK A 502 1555 1555 2.03 LINK SG CYS F 111 S01 9JK F 503 1555 1555 2.05 LINK ND1 HIS A 46 ZN ZN A 503 1555 1555 2.17 LINK NE2 HIS A 48 ZN ZN A 503 1555 1555 2.06 LINK ND1 HIS A 63 ZN ZN A 501 1555 1555 2.02 LINK ND1 HIS A 71 ZN ZN A 501 1555 1555 2.05 LINK ND1 HIS A 80 ZN ZN A 501 1555 1555 2.02 LINK OD1 ASP A 83 ZN ZN A 501 1555 1555 1.95 LINK NE2 HIS A 120 ZN ZN A 503 1555 1555 1.96 LINK ZN ZN A 503 O4 SO4 A 504 1555 1555 1.98 LINK ND1 HIS F 46 ZN ZN F 502 1555 1555 2.25 LINK NE2 HIS F 48 ZN ZN F 502 1555 1555 2.06 LINK ND1 HIS F 63 ZN ZN F 501 1555 1555 2.05 LINK ND1 HIS F 71 ZN ZN F 501 1555 1555 2.05 LINK ND1 HIS F 80 ZN ZN F 501 1555 1555 2.02 LINK OD1 ASP F 83 ZN ZN F 501 1555 1555 1.96 LINK NE2 HIS F 120 ZN ZN F 502 1555 1555 1.86 LINK ZN ZN F 502 O1 SO4 F 504 1555 1555 2.04 CISPEP 1 GLY F 12 PRO F 13 0 0.06 SITE 1 AC1 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC2 9 GLN A 15 LYS A 36 LEU A 106 SER A 107 SITE 2 AC2 9 GLY A 108 CYS A 111 ILE A 113 HOH A 683 SITE 3 AC2 9 9JK F 503 SITE 1 AC3 5 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 2 AC3 5 SO4 A 504 SITE 1 AC4 11 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 2 AC4 11 THR A 137 ARG A 143 ZN A 503 HOH A 604 SITE 3 AC4 11 HOH A 609 HOH A 621 HOH A 637 SITE 1 AC5 4 HIS F 63 HIS F 71 HIS F 80 ASP F 83 SITE 1 AC6 5 HIS F 46 HIS F 48 HIS F 63 HIS F 120 SITE 2 AC6 5 SO4 F 504 SITE 1 AC7 10 HIS F 46 HIS F 48 HIS F 63 HIS F 120 SITE 2 AC7 10 THR F 137 ARG F 143 ZN F 502 HOH F 609 SITE 3 AC7 10 HOH F 614 HOH F 617 SITE 1 AC8 12 ASN F 65 LEU F 67 SER F 68 LYS F 70 SITE 2 AC8 12 GLY F 72 ASP F 76 GLU F 77 ARG F 79 SITE 3 AC8 12 HIS F 80 HOH F 635 HOH F 678 HOH F 682 SITE 1 AC9 15 ILE A 113 9JK A 502 PHE F 64 SER F 105 SITE 2 AC9 15 LEU F 106 SER F 107 GLY F 108 ASP F 109 SITE 3 AC9 15 HIS F 110 ILE F 112 ILE F 113 ARG F 115 SITE 4 AC9 15 HOH F 612 HOH F 663 HOH F 668 CRYST1 38.050 67.960 51.180 90.00 106.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026281 0.000000 0.007900 0.00000 SCALE2 0.000000 0.014714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020402 0.00000