HEADER SIGNALING PROTEIN 01-JUN-17 5O57 TITLE SOLUTION STRUCTURE OF THE N-TERMINAL REGION OF DKK4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DICKKOPF-RELATED PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HDKK-4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DKK4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLEICS-05 KEYWDS DKK4, WNT SIGNALLING, CYSTEINE-RICH DOMAIN 1, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 70 AUTHOR L.C.WATERS,S.PATEL,A.M.BARKELL,F.W.MUSKETT,M.K.ROBINSON,G.HOLDSWORTH, AUTHOR 2 M.D.CARR REVDAT 7 14-JUN-23 5O57 1 REMARK REVDAT 6 30-OCT-19 5O57 1 REMARK REVDAT 5 08-MAY-19 5O57 1 REMARK REVDAT 4 15-AUG-18 5O57 1 JRNL REVDAT 3 04-JUL-18 5O57 1 JRNL ATOM REVDAT 2 27-JUN-18 5O57 1 JRNL REVDAT 1 13-JUN-18 5O57 0 JRNL AUTH S.PATEL,A.M.BARKELL,D.GUPTA,S.L.STRONG,S.BRUTON,F.W.MUSKETT, JRNL AUTH 2 P.W.ADDIS,P.S.RENSHAW,P.M.SLOCOMBE,C.DOYLE,A.CLARGO, JRNL AUTH 3 R.J.TAYLOR,C.E.PROSSER,A.J.HENRY,M.K.ROBINSON,L.C.WATERS, JRNL AUTH 4 G.HOLDSWORTH,M.D.CARR JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF DICKKOPF 4 (DKK4): NEW JRNL TITL 2 INSIGHTS INTO DKK EVOLUTION AND REGULATION OF WNT SIGNALING JRNL TITL 3 BY DKK AND KREMEN PROTEINS. JRNL REF J. BIOL. CHEM. V. 293 12149 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29925589 JRNL DOI 10.1074/JBC.RA118.002918 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REDAC REMARK 4 REMARK 4 5O57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200003224. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 140 UM [U-13C; U-15N] DKK4N, 95% REMARK 210 H2O/5% D2ODKK4N; 210 UM [U-15N] REMARK 210 DKK4N, 95% H2O/5% D2O; 90 UM [U- REMARK 210 15N] DKK4N, 100% D2O; 140 UM [U- REMARK 210 13C; U-15N] DKK4N, 100% D2O; 230 REMARK 210 UM [U-13C; U-15N] DKK4N, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D TROSY-HNCACB; 3D TROSY REMARK 210 -HN(CO)CACB; 3D TROSY-HNCO; 3D REMARK 210 HBHA(CO)NH; 2D TROSY; 2D 1H-1H REMARK 210 TOCSY; 2D 1H-1H NOESY; 3D HCCH- REMARK 210 TOCSY; 3D 13C/1H HSQC-NOESY; 3D REMARK 210 15N/1H NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVIII; AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY NMRFAM REMARK 210 -SPARKY 1.4, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 70 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 13 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 24 -51.20 -173.89 REMARK 500 1 ASN A 25 80.42 57.99 REMARK 500 1 ILE A 26 69.37 -151.29 REMARK 500 1 SER A 28 111.83 -165.33 REMARK 500 1 ALA A 30 100.46 -168.07 REMARK 500 1 ASP A 31 89.14 -168.32 REMARK 500 1 ALA A 35 117.21 -171.94 REMARK 500 1 ARG A 36 107.60 -164.66 REMARK 500 1 CYS A 47 -174.53 -65.19 REMARK 500 1 ASN A 48 -73.48 -56.74 REMARK 500 1 THR A 49 -67.93 -160.95 REMARK 500 1 ARG A 50 54.80 -94.52 REMARK 500 1 GLN A 103 -174.62 57.67 REMARK 500 1 SER A 104 -71.52 -162.11 REMARK 500 1 HIS A 110 130.17 -175.56 REMARK 500 2 LEU A 19 40.94 -147.52 REMARK 500 2 ARG A 27 75.79 58.17 REMARK 500 2 SER A 29 123.17 -170.31 REMARK 500 2 ALA A 30 -62.72 -127.65 REMARK 500 2 ASP A 31 -48.42 -168.58 REMARK 500 2 LEU A 32 34.39 -168.93 REMARK 500 2 HIS A 33 179.49 60.65 REMARK 500 2 ASN A 99 -176.11 59.03 REMARK 500 3 HIS A 33 114.96 -178.13 REMARK 500 3 ASN A 48 -72.66 -53.01 REMARK 500 3 THR A 49 -39.98 -171.33 REMARK 500 3 THR A 97 -68.69 -145.31 REMARK 500 3 GLU A 98 141.71 -178.09 REMARK 500 3 HIS A 110 145.75 -175.20 REMARK 500 4 ASN A 25 172.91 60.47 REMARK 500 4 ILE A 26 -36.65 -174.37 REMARK 500 4 ARG A 27 177.64 61.85 REMARK 500 4 ARG A 36 55.52 -147.55 REMARK 500 4 SER A 39 173.72 60.71 REMARK 500 4 THR A 65 170.00 -56.64 REMARK 500 4 THR A 97 95.11 61.28 REMARK 500 4 LEU A 100 -172.91 60.67 REMARK 500 4 HIS A 108 169.79 61.32 REMARK 500 4 HIS A 110 166.02 62.93 REMARK 500 5 ARG A 27 -62.74 -133.56 REMARK 500 5 ALA A 30 36.92 -175.30 REMARK 500 5 ASP A 31 77.82 56.83 REMARK 500 5 HIS A 33 -54.70 -145.65 REMARK 500 5 LYS A 37 -61.97 -148.76 REMARK 500 5 SER A 39 -173.19 56.06 REMARK 500 5 CYS A 47 -173.30 -69.41 REMARK 500 5 ASN A 48 -73.84 -55.40 REMARK 500 5 THR A 49 -66.17 -164.86 REMARK 500 5 ARG A 50 46.31 -94.87 REMARK 500 5 THR A 97 -60.12 -155.56 REMARK 500 REMARK 500 THIS ENTRY HAS 753 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34146 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE N-TERMINAL REGION OF DKK4 DBREF 5O57 A 19 97 UNP Q9UBT3 DKK4_HUMAN 19 97 SEQADV 5O57 MET A 18 UNP Q9UBT3 INITIATING METHIONINE SEQADV 5O57 GLU A 98 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 ASN A 99 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 LEU A 100 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 TYR A 101 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 PHE A 102 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 GLN A 103 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 SER A 104 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 LEU A 105 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 GLU A 106 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 HIS A 107 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 HIS A 108 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 HIS A 109 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 HIS A 110 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 HIS A 111 UNP Q9UBT3 EXPRESSION TAG SEQADV 5O57 HIS A 112 UNP Q9UBT3 EXPRESSION TAG SEQRES 1 A 95 MET LEU VAL LEU ASP PHE ASN ASN ILE ARG SER SER ALA SEQRES 2 A 95 ASP LEU HIS GLY ALA ARG LYS GLY SER GLN CYS LEU SER SEQRES 3 A 95 ASP THR ASP CYS ASN THR ARG LYS PHE CYS LEU GLN PRO SEQRES 4 A 95 ARG ASP GLU LYS PRO PHE CYS ALA THR CYS ARG GLY LEU SEQRES 5 A 95 ARG ARG ARG CYS GLN ARG ASP ALA MET CYS CYS PRO GLY SEQRES 6 A 95 THR LEU CYS VAL ASN ASP VAL CYS THR THR MET GLU ASP SEQRES 7 A 95 ALA THR GLU ASN LEU TYR PHE GLN SER LEU GLU HIS HIS SEQRES 8 A 95 HIS HIS HIS HIS HELIX 1 AA1 SER A 43 CYS A 47 5 5 SHEET 1 AA1 2 CYS A 53 LEU A 54 0 SHEET 2 AA1 2 PHE A 62 CYS A 63 -1 O PHE A 62 N LEU A 54 SHEET 1 AA2 2 THR A 83 VAL A 86 0 SHEET 2 AA2 2 VAL A 89 THR A 92 -1 O THR A 91 N LEU A 84 SSBOND 1 CYS A 41 CYS A 53 1555 1555 2.02 SSBOND 2 CYS A 47 CYS A 63 1555 1555 2.01 SSBOND 3 CYS A 66 CYS A 80 1555 1555 2.09 SSBOND 4 CYS A 73 CYS A 85 1555 1555 2.08 SSBOND 5 CYS A 79 CYS A 90 1555 1555 2.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1