data_5O5S # _entry.id 5O5S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5O5S WWPDB D_1200005239 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5O5S _pdbx_database_status.recvd_initial_deposition_date 2017-06-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gonzalez, G.M.' 1 ? 'Durica-Mitic, S.' 2 ? 'Hardwick, S.W.' 3 0000-0001-9246-1864 'Moncrieffe, M.' 4 ? 'Resch, M.' 5 ? 'Neumann, P.' 6 ? 'Ficner, R.' 7 0000-0002-1739-6086 'Gorke, B.' 8 ? 'Luisi, B.F.' 9 0000-0003-1144-9877 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 45 _citation.language ? _citation.page_first 10845 _citation.page_last 10860 _citation.title 'Structural insights into RapZ-mediated regulation of bacterial amino-sugar metabolism.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkx732 _citation.pdbx_database_id_PubMed 28977623 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gonzalez, G.M.' 1 primary 'Durica-Mitic, S.' 2 primary 'Hardwick, S.W.' 3 primary 'Moncrieffe, M.C.' 4 primary 'Resch, M.' 5 primary 'Neumann, P.' 6 primary 'Ficner, R.' 7 primary 'Gorke, B.' 8 primary 'Luisi, B.F.' 9 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5O5S _cell.details ? _cell.formula_units_Z ? _cell.length_a 61.720 _cell.length_a_esd ? _cell.length_b 61.720 _cell.length_b_esd ? _cell.length_c 124.530 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNase adapter protein RapZ' 15450.694 1 ? ? 'C-terminal domain, UNP Residues 154-284' ? 2 non-polymer syn 'MALONATE ION' 102.046 1 ? ? ? ? 3 water nat water 18.015 129 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GKRERELTMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPML ETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKP ; _entity_poly.pdbx_seq_one_letter_code_can ;GKRERELTMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPML ETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LYS n 1 3 ARG n 1 4 GLU n 1 5 ARG n 1 6 GLU n 1 7 LEU n 1 8 THR n 1 9 MET n 1 10 VAL n 1 11 PHE n 1 12 GLU n 1 13 SER n 1 14 PHE n 1 15 GLY n 1 16 PHE n 1 17 LYS n 1 18 HIS n 1 19 GLY n 1 20 ILE n 1 21 PRO n 1 22 ILE n 1 23 ASP n 1 24 ALA n 1 25 ASP n 1 26 TYR n 1 27 VAL n 1 28 PHE n 1 29 ASP n 1 30 VAL n 1 31 ARG n 1 32 PHE n 1 33 LEU n 1 34 PRO n 1 35 ASN n 1 36 PRO n 1 37 HIS n 1 38 TRP n 1 39 ASP n 1 40 PRO n 1 41 LYS n 1 42 LEU n 1 43 ARG n 1 44 PRO n 1 45 MET n 1 46 THR n 1 47 GLY n 1 48 LEU n 1 49 ASP n 1 50 LYS n 1 51 PRO n 1 52 VAL n 1 53 ALA n 1 54 ALA n 1 55 PHE n 1 56 LEU n 1 57 ASP n 1 58 ARG n 1 59 HIS n 1 60 THR n 1 61 GLU n 1 62 VAL n 1 63 HIS n 1 64 ASN n 1 65 PHE n 1 66 ILE n 1 67 TYR n 1 68 GLN n 1 69 THR n 1 70 ARG n 1 71 SER n 1 72 TYR n 1 73 LEU n 1 74 GLU n 1 75 LEU n 1 76 TRP n 1 77 LEU n 1 78 PRO n 1 79 MET n 1 80 LEU n 1 81 GLU n 1 82 THR n 1 83 ASN n 1 84 ASN n 1 85 ARG n 1 86 SER n 1 87 TYR n 1 88 LEU n 1 89 THR n 1 90 VAL n 1 91 ALA n 1 92 ILE n 1 93 GLY n 1 94 CYS n 1 95 THR n 1 96 GLY n 1 97 GLY n 1 98 LYS n 1 99 HIS n 1 100 ARG n 1 101 SER n 1 102 VAL n 1 103 TYR n 1 104 ILE n 1 105 ALA n 1 106 GLU n 1 107 GLN n 1 108 LEU n 1 109 ALA n 1 110 ASP n 1 111 TYR n 1 112 PHE n 1 113 ARG n 1 114 SER n 1 115 ARG n 1 116 GLY n 1 117 LYS n 1 118 ASN n 1 119 VAL n 1 120 GLN n 1 121 SER n 1 122 ARG n 1 123 HIS n 1 124 ARG n 1 125 THR n 1 126 LEU n 1 127 GLU n 1 128 LYS n 1 129 ARG n 1 130 LYS n 1 131 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 131 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rapZ, yhbJ, b3205, JW3172' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant Rosetta _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RAPZ_ECOLI _struct_ref.pdbx_db_accession P0A894 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKRERELTMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPML ETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKP ; _struct_ref.pdbx_align_begin 154 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5O5S _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 131 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A894 _struct_ref_seq.db_align_beg 154 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 284 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 154 _struct_ref_seq.pdbx_auth_seq_align_end 284 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLI non-polymer . 'MALONATE ION' ? 'C3 H2 O4 -2' 102.046 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5O5S _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.34 _exptl_crystal.description Hexagonal _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM HEPES, pH 7.0, 1 M malonate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-07-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9760 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9760 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5O5S _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.17 _reflns.d_resolution_low 62.29 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 48089 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.57 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 22.6 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.170 _reflns_shell.d_res_low 1.21 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 4303 _reflns_shell.percent_possible_all 99.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.6 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5O5S _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.170 _refine.ls_d_res_low 53.451 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 47696 _refine.ls_number_reflns_R_free 2359 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.22 _refine.ls_percent_reflns_R_free 4.95 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1549 _refine.ls_R_factor_R_free 0.1759 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1538 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.35 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.09 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1003 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 1139 _refine_hist.d_res_high 1.170 _refine_hist.d_res_low 53.451 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 ? 1066 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.208 ? 1453 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 2.916 ? 621 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.102 ? 155 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 188 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.1700 1.1939 . . 113 2560 97.00 . . . 0.3299 . 0.3090 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1939 1.2198 . . 135 2582 98.00 . . . 0.3106 . 0.2905 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2198 1.2482 . . 121 2571 98.00 . . . 0.3055 . 0.2534 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2482 1.2794 . . 132 2604 98.00 . . . 0.2739 . 0.2411 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2794 1.3140 . . 142 2612 99.00 . . . 0.2655 . 0.2108 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3140 1.3527 . . 149 2597 99.00 . . . 0.2491 . 0.1831 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3527 1.3964 . . 143 2619 99.00 . . . 0.2022 . 0.1721 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3964 1.4463 . . 134 2659 100.00 . . . 0.1987 . 0.1581 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4463 1.5042 . . 153 2636 100.00 . . . 0.1695 . 0.1331 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5042 1.5727 . . 131 2647 100.00 . . . 0.1465 . 0.1207 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5727 1.6556 . . 137 2682 100.00 . . . 0.1445 . 0.1137 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6556 1.7593 . . 124 2700 100.00 . . . 0.1223 . 0.1218 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7593 1.8952 . . 122 2692 100.00 . . . 0.1539 . 0.1190 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8952 2.0859 . . 140 2722 100.00 . . . 0.1419 . 0.1215 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0859 2.3877 . . 160 2726 100.00 . . . 0.1379 . 0.1323 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3877 3.0082 . . 143 2779 100.00 . . . 0.1589 . 0.1486 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0082 53.5067 . . 180 2949 100.00 . . . 0.1796 . 0.1556 . . . . . . . . . . # _struct.entry_id 5O5S _struct.title 'X-ray crystal structure of the RapZ C-terminal domain from Escherichia coli' _struct.pdbx_descriptor 'RNase adapter protein RapZ' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5O5S _struct_keywords.text 'RNA binding Amino-sugar metabolism Kinase like domain PFK like domain, CHAPERONE' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 17 ? GLY A 19 ? LYS A 170 GLY A 172 5 ? 3 HELX_P HELX_P2 AA2 ASN A 35 ? ASP A 39 ? ASN A 188 ASP A 192 5 ? 5 HELX_P HELX_P3 AA3 ASP A 49 ? ARG A 58 ? ASP A 202 ARG A 211 1 ? 10 HELX_P HELX_P4 AA4 HIS A 59 ? GLU A 81 ? HIS A 212 GLU A 234 1 ? 23 HELX_P HELX_P5 AA5 HIS A 99 ? ARG A 115 ? HIS A 252 ARG A 268 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 26 ? ASP A 29 ? TYR A 179 ASP A 182 AA1 2 TYR A 87 ? CYS A 94 ? TYR A 240 CYS A 247 AA1 3 THR A 8 ? GLY A 15 ? THR A 161 GLY A 168 AA1 4 ASN A 118 ? HIS A 123 ? ASN A 271 HIS A 276 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 26 ? N TYR A 179 O ALA A 91 ? O ALA A 244 AA1 2 3 O VAL A 90 ? O VAL A 243 N VAL A 10 ? N VAL A 163 AA1 3 4 N MET A 9 ? N MET A 162 O ASN A 118 ? O ASN A 271 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MLI _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'binding site for residue MLI A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ASN A 35 ? ASN A 188 . ? 1_555 ? 2 AC1 10 HIS A 37 ? HIS A 190 . ? 1_555 ? 3 AC1 10 CYS A 94 ? CYS A 247 . ? 1_555 ? 4 AC1 10 THR A 95 ? THR A 248 . ? 1_555 ? 5 AC1 10 GLY A 96 ? GLY A 249 . ? 1_555 ? 6 AC1 10 HIS A 99 ? HIS A 252 . ? 1_555 ? 7 AC1 10 ARG A 100 ? ARG A 253 . ? 1_555 ? 8 AC1 10 HOH C . ? HOH A 409 . ? 1_555 ? 9 AC1 10 HOH C . ? HOH A 447 . ? 1_555 ? 10 AC1 10 HOH C . ? HOH A 457 . ? 1_555 ? # _atom_sites.entry_id 5O5S _atom_sites.fract_transf_matrix[1][1] 0.016202 _atom_sites.fract_transf_matrix[1][2] 0.009354 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018709 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008030 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 154 ? ? ? A . n A 1 2 LYS 2 155 ? ? ? A . n A 1 3 ARG 3 156 ? ? ? A . n A 1 4 GLU 4 157 ? ? ? A . n A 1 5 ARG 5 158 ? ? ? A . n A 1 6 GLU 6 159 159 GLU GLU A . n A 1 7 LEU 7 160 160 LEU LEU A . n A 1 8 THR 8 161 161 THR THR A . n A 1 9 MET 9 162 162 MET MET A . n A 1 10 VAL 10 163 163 VAL VAL A . n A 1 11 PHE 11 164 164 PHE PHE A . n A 1 12 GLU 12 165 165 GLU GLU A . n A 1 13 SER 13 166 166 SER SER A . n A 1 14 PHE 14 167 167 PHE PHE A . n A 1 15 GLY 15 168 168 GLY GLY A . n A 1 16 PHE 16 169 169 PHE PHE A . n A 1 17 LYS 17 170 170 LYS LYS A . n A 1 18 HIS 18 171 171 HIS HIS A . n A 1 19 GLY 19 172 172 GLY GLY A . n A 1 20 ILE 20 173 173 ILE ILE A . n A 1 21 PRO 21 174 174 PRO PRO A . n A 1 22 ILE 22 175 175 ILE ILE A . n A 1 23 ASP 23 176 176 ASP ASP A . n A 1 24 ALA 24 177 177 ALA ALA A . n A 1 25 ASP 25 178 178 ASP ASP A . n A 1 26 TYR 26 179 179 TYR TYR A . n A 1 27 VAL 27 180 180 VAL VAL A . n A 1 28 PHE 28 181 181 PHE PHE A . n A 1 29 ASP 29 182 182 ASP ASP A . n A 1 30 VAL 30 183 183 VAL VAL A . n A 1 31 ARG 31 184 184 ARG ARG A . n A 1 32 PHE 32 185 185 PHE PHE A . n A 1 33 LEU 33 186 186 LEU LEU A . n A 1 34 PRO 34 187 187 PRO PRO A . n A 1 35 ASN 35 188 188 ASN ASN A . n A 1 36 PRO 36 189 189 PRO PRO A . n A 1 37 HIS 37 190 190 HIS HIS A . n A 1 38 TRP 38 191 191 TRP TRP A . n A 1 39 ASP 39 192 192 ASP ASP A . n A 1 40 PRO 40 193 193 PRO PRO A . n A 1 41 LYS 41 194 194 LYS LYS A . n A 1 42 LEU 42 195 195 LEU LEU A . n A 1 43 ARG 43 196 196 ARG ARG A . n A 1 44 PRO 44 197 197 PRO PRO A . n A 1 45 MET 45 198 198 MET MET A . n A 1 46 THR 46 199 199 THR THR A . n A 1 47 GLY 47 200 200 GLY GLY A . n A 1 48 LEU 48 201 201 LEU LEU A . n A 1 49 ASP 49 202 202 ASP ASP A . n A 1 50 LYS 50 203 203 LYS LYS A . n A 1 51 PRO 51 204 204 PRO PRO A . n A 1 52 VAL 52 205 205 VAL VAL A . n A 1 53 ALA 53 206 206 ALA ALA A . n A 1 54 ALA 54 207 207 ALA ALA A . n A 1 55 PHE 55 208 208 PHE PHE A . n A 1 56 LEU 56 209 209 LEU LEU A . n A 1 57 ASP 57 210 210 ASP ASP A . n A 1 58 ARG 58 211 211 ARG ARG A . n A 1 59 HIS 59 212 212 HIS HIS A . n A 1 60 THR 60 213 213 THR THR A . n A 1 61 GLU 61 214 214 GLU GLU A . n A 1 62 VAL 62 215 215 VAL VAL A . n A 1 63 HIS 63 216 216 HIS HIS A . n A 1 64 ASN 64 217 217 ASN ASN A . n A 1 65 PHE 65 218 218 PHE PHE A . n A 1 66 ILE 66 219 219 ILE ILE A . n A 1 67 TYR 67 220 220 TYR TYR A . n A 1 68 GLN 68 221 221 GLN GLN A . n A 1 69 THR 69 222 222 THR THR A . n A 1 70 ARG 70 223 223 ARG ARG A . n A 1 71 SER 71 224 224 SER SER A . n A 1 72 TYR 72 225 225 TYR TYR A . n A 1 73 LEU 73 226 226 LEU LEU A . n A 1 74 GLU 74 227 227 GLU GLU A . n A 1 75 LEU 75 228 228 LEU LEU A . n A 1 76 TRP 76 229 229 TRP TRP A . n A 1 77 LEU 77 230 230 LEU LEU A . n A 1 78 PRO 78 231 231 PRO PRO A . n A 1 79 MET 79 232 232 MET MET A . n A 1 80 LEU 80 233 233 LEU LEU A . n A 1 81 GLU 81 234 234 GLU GLU A . n A 1 82 THR 82 235 235 THR THR A . n A 1 83 ASN 83 236 236 ASN ASN A . n A 1 84 ASN 84 237 237 ASN ASN A . n A 1 85 ARG 85 238 238 ARG ARG A . n A 1 86 SER 86 239 239 SER SER A . n A 1 87 TYR 87 240 240 TYR TYR A . n A 1 88 LEU 88 241 241 LEU LEU A . n A 1 89 THR 89 242 242 THR THR A . n A 1 90 VAL 90 243 243 VAL VAL A . n A 1 91 ALA 91 244 244 ALA ALA A . n A 1 92 ILE 92 245 245 ILE ILE A . n A 1 93 GLY 93 246 246 GLY GLY A . n A 1 94 CYS 94 247 247 CYS CYS A . n A 1 95 THR 95 248 248 THR THR A . n A 1 96 GLY 96 249 249 GLY GLY A . n A 1 97 GLY 97 250 250 GLY GLY A . n A 1 98 LYS 98 251 251 LYS LYS A . n A 1 99 HIS 99 252 252 HIS HIS A . n A 1 100 ARG 100 253 253 ARG ARG A . n A 1 101 SER 101 254 254 SER SER A . n A 1 102 VAL 102 255 255 VAL VAL A . n A 1 103 TYR 103 256 256 TYR TYR A . n A 1 104 ILE 104 257 257 ILE ILE A . n A 1 105 ALA 105 258 258 ALA ALA A . n A 1 106 GLU 106 259 259 GLU GLU A . n A 1 107 GLN 107 260 260 GLN GLN A . n A 1 108 LEU 108 261 261 LEU LEU A . n A 1 109 ALA 109 262 262 ALA ALA A . n A 1 110 ASP 110 263 263 ASP ASP A . n A 1 111 TYR 111 264 264 TYR TYR A . n A 1 112 PHE 112 265 265 PHE PHE A . n A 1 113 ARG 113 266 266 ARG ARG A . n A 1 114 SER 114 267 267 SER SER A . n A 1 115 ARG 115 268 268 ARG ARG A . n A 1 116 GLY 116 269 269 GLY GLY A . n A 1 117 LYS 117 270 270 LYS LYS A . n A 1 118 ASN 118 271 271 ASN ASN A . n A 1 119 VAL 119 272 272 VAL VAL A . n A 1 120 GLN 120 273 273 GLN GLN A . n A 1 121 SER 121 274 274 SER SER A . n A 1 122 ARG 122 275 275 ARG ARG A . n A 1 123 HIS 123 276 276 HIS HIS A . n A 1 124 ARG 124 277 277 ARG ARG A . n A 1 125 THR 125 278 278 THR THR A . n A 1 126 LEU 126 279 279 LEU LEU A . n A 1 127 GLU 127 280 280 GLU GLU A . n A 1 128 LYS 128 281 281 LYS LYS A . n A 1 129 ARG 129 282 ? ? ? A . n A 1 130 LYS 130 283 ? ? ? A . n A 1 131 PRO 131 284 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI 1 301 1 MLI MLI A . C 3 HOH 1 401 74 HOH HOH A . C 3 HOH 2 402 57 HOH HOH A . C 3 HOH 3 403 44 HOH HOH A . C 3 HOH 4 404 30 HOH HOH A . C 3 HOH 5 405 126 HOH HOH A . C 3 HOH 6 406 96 HOH HOH A . C 3 HOH 7 407 28 HOH HOH A . C 3 HOH 8 408 91 HOH HOH A . C 3 HOH 9 409 8 HOH HOH A . C 3 HOH 10 410 45 HOH HOH A . C 3 HOH 11 411 85 HOH HOH A . C 3 HOH 12 412 49 HOH HOH A . C 3 HOH 13 413 37 HOH HOH A . C 3 HOH 14 414 24 HOH HOH A . C 3 HOH 15 415 89 HOH HOH A . C 3 HOH 16 416 13 HOH HOH A . C 3 HOH 17 417 7 HOH HOH A . C 3 HOH 18 418 10 HOH HOH A . C 3 HOH 19 419 103 HOH HOH A . C 3 HOH 20 420 38 HOH HOH A . C 3 HOH 21 421 50 HOH HOH A . C 3 HOH 22 422 80 HOH HOH A . C 3 HOH 23 423 84 HOH HOH A . C 3 HOH 24 424 27 HOH HOH A . C 3 HOH 25 425 51 HOH HOH A . C 3 HOH 26 426 129 HOH HOH A . C 3 HOH 27 427 14 HOH HOH A . C 3 HOH 28 428 25 HOH HOH A . C 3 HOH 29 429 132 HOH HOH A . C 3 HOH 30 430 66 HOH HOH A . C 3 HOH 31 431 122 HOH HOH A . C 3 HOH 32 432 54 HOH HOH A . C 3 HOH 33 433 81 HOH HOH A . C 3 HOH 34 434 26 HOH HOH A . C 3 HOH 35 435 119 HOH HOH A . C 3 HOH 36 436 16 HOH HOH A . C 3 HOH 37 437 33 HOH HOH A . C 3 HOH 38 438 3 HOH HOH A . C 3 HOH 39 439 20 HOH HOH A . C 3 HOH 40 440 43 HOH HOH A . C 3 HOH 41 441 18 HOH HOH A . C 3 HOH 42 442 2 HOH HOH A . C 3 HOH 43 443 130 HOH HOH A . C 3 HOH 44 444 17 HOH HOH A . C 3 HOH 45 445 47 HOH HOH A . C 3 HOH 46 446 106 HOH HOH A . C 3 HOH 47 447 19 HOH HOH A . C 3 HOH 48 448 56 HOH HOH A . C 3 HOH 49 449 21 HOH HOH A . C 3 HOH 50 450 63 HOH HOH A . C 3 HOH 51 451 36 HOH HOH A . C 3 HOH 52 452 35 HOH HOH A . C 3 HOH 53 453 22 HOH HOH A . C 3 HOH 54 454 64 HOH HOH A . C 3 HOH 55 455 34 HOH HOH A . C 3 HOH 56 456 46 HOH HOH A . C 3 HOH 57 457 48 HOH HOH A . C 3 HOH 58 458 98 HOH HOH A . C 3 HOH 59 459 107 HOH HOH A . C 3 HOH 60 460 69 HOH HOH A . C 3 HOH 61 461 6 HOH HOH A . C 3 HOH 62 462 111 HOH HOH A . C 3 HOH 63 463 123 HOH HOH A . C 3 HOH 64 464 99 HOH HOH A . C 3 HOH 65 465 1 HOH HOH A . C 3 HOH 66 466 124 HOH HOH A . C 3 HOH 67 467 77 HOH HOH A . C 3 HOH 68 468 39 HOH HOH A . C 3 HOH 69 469 120 HOH HOH A . C 3 HOH 70 470 97 HOH HOH A . C 3 HOH 71 471 29 HOH HOH A . C 3 HOH 72 472 82 HOH HOH A . C 3 HOH 73 473 112 HOH HOH A . C 3 HOH 74 474 15 HOH HOH A . C 3 HOH 75 475 55 HOH HOH A . C 3 HOH 76 476 12 HOH HOH A . C 3 HOH 77 477 137 HOH HOH A . C 3 HOH 78 478 127 HOH HOH A . C 3 HOH 79 479 87 HOH HOH A . C 3 HOH 80 480 110 HOH HOH A . C 3 HOH 81 481 148 HOH HOH A . C 3 HOH 82 482 88 HOH HOH A . C 3 HOH 83 483 147 HOH HOH A . C 3 HOH 84 484 32 HOH HOH A . C 3 HOH 85 485 41 HOH HOH A . C 3 HOH 86 486 31 HOH HOH A . C 3 HOH 87 487 11 HOH HOH A . C 3 HOH 88 488 145 HOH HOH A . C 3 HOH 89 489 118 HOH HOH A . C 3 HOH 90 490 115 HOH HOH A . C 3 HOH 91 491 113 HOH HOH A . C 3 HOH 92 492 23 HOH HOH A . C 3 HOH 93 493 79 HOH HOH A . C 3 HOH 94 494 62 HOH HOH A . C 3 HOH 95 495 52 HOH HOH A . C 3 HOH 96 496 71 HOH HOH A . C 3 HOH 97 497 136 HOH HOH A . C 3 HOH 98 498 138 HOH HOH A . C 3 HOH 99 499 78 HOH HOH A . C 3 HOH 100 500 144 HOH HOH A . C 3 HOH 101 501 40 HOH HOH A . C 3 HOH 102 502 42 HOH HOH A . C 3 HOH 103 503 61 HOH HOH A . C 3 HOH 104 504 114 HOH HOH A . C 3 HOH 105 505 90 HOH HOH A . C 3 HOH 106 506 70 HOH HOH A . C 3 HOH 107 507 121 HOH HOH A . C 3 HOH 108 508 72 HOH HOH A . C 3 HOH 109 509 139 HOH HOH A . C 3 HOH 110 510 95 HOH HOH A . C 3 HOH 111 511 94 HOH HOH A . C 3 HOH 112 512 60 HOH HOH A . C 3 HOH 113 513 65 HOH HOH A . C 3 HOH 114 514 133 HOH HOH A . C 3 HOH 115 515 53 HOH HOH A . C 3 HOH 116 516 125 HOH HOH A . C 3 HOH 117 517 68 HOH HOH A . C 3 HOH 118 518 134 HOH HOH A . C 3 HOH 119 519 58 HOH HOH A . C 3 HOH 120 520 105 HOH HOH A . C 3 HOH 121 521 146 HOH HOH A . C 3 HOH 122 522 104 HOH HOH A . C 3 HOH 123 523 67 HOH HOH A . C 3 HOH 124 524 73 HOH HOH A . C 3 HOH 125 525 75 HOH HOH A . C 3 HOH 126 526 86 HOH HOH A . C 3 HOH 127 527 131 HOH HOH A . C 3 HOH 128 528 140 HOH HOH A . C 3 HOH 129 529 117 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2700 ? 1 MORE -7 ? 1 'SSA (A^2)' 11290 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5000000000 0.8660254038 0.0000000000 30.8600000000 0.8660254038 -0.5000000000 0.0000000000 -53.4510879216 0.0000000000 0.0000000000 -1.0000000000 -20.7550000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-08-30 2 'Structure model' 1 1 2017-10-18 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.name' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(dev_2747: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 483 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 521 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.94 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 182 ? ? CG A ASP 182 ? ? OD1 A ASP 182 ? ? 123.91 118.30 5.61 0.90 N 2 1 NE A ARG 238 ? ? CZ A ARG 238 ? ? NH2 A ARG 238 ? ? 116.97 120.30 -3.33 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 235 ? ? -144.15 50.99 2 1 CYS A 247 ? ? -118.84 -166.80 3 1 HIS A 252 ? ? -116.06 -78.01 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 527 ? 6.11 . 2 1 O ? A HOH 528 ? 6.46 . 3 1 O ? A HOH 529 ? 7.93 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 159 ? CG ? A GLU 6 CG 2 1 Y 1 A GLU 159 ? CD ? A GLU 6 CD 3 1 Y 1 A GLU 159 ? OE1 ? A GLU 6 OE1 4 1 Y 1 A GLU 159 ? OE2 ? A GLU 6 OE2 5 1 Y 1 A LYS 170 ? NZ ? A LYS 17 NZ 6 1 Y 1 A LYS 194 ? CD ? A LYS 41 CD 7 1 Y 1 A LYS 194 ? CE ? A LYS 41 CE 8 1 Y 1 A LYS 194 ? NZ ? A LYS 41 NZ 9 1 Y 1 A ARG 196 ? CD ? A ARG 43 CD 10 1 Y 1 A ARG 196 ? NE ? A ARG 43 NE 11 1 Y 1 A ARG 196 ? CZ ? A ARG 43 CZ 12 1 Y 1 A ARG 196 ? NH1 ? A ARG 43 NH1 13 1 Y 1 A ARG 196 ? NH2 ? A ARG 43 NH2 14 1 Y 1 A ASN 237 ? CG ? A ASN 84 CG 15 1 Y 1 A ASN 237 ? OD1 ? A ASN 84 OD1 16 1 Y 1 A ASN 237 ? ND2 ? A ASN 84 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 154 ? A GLY 1 2 1 Y 1 A LYS 155 ? A LYS 2 3 1 Y 1 A ARG 156 ? A ARG 3 4 1 Y 1 A GLU 157 ? A GLU 4 5 1 Y 1 A ARG 158 ? A ARG 5 6 1 Y 1 A ARG 282 ? A ARG 129 7 1 Y 1 A LYS 283 ? A LYS 130 8 1 Y 1 A PRO 284 ? A PRO 131 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Wellcome Trust' 'United Kingdom' RG84381 1 'Austrian Science Fund' Austria 'P 26681-B22' 2 'Austrian Science Fund' Austria F4317 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MALONATE ION' MLI 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details ? #