HEADER TRANSFERASE 02-JUN-17 5O5Z TITLE CRYSTAL STRUCTURE OF THERMOCOCCUS LITORALIS ADP-DEPENDENT GLUCOKINASE TITLE 2 (GK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-DEPENDENT GLUCOKINASE,ADP-DEPENDENT GLUCOKINASE,ADP- COMPND 3 DEPENDENT GLUCOKINASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: ADPGK,ADPGK,ADPGK; COMPND 6 EC: 2.7.1.147,2.7.1.147,2.7.1.147; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS LITORALIS; SOURCE 3 ORGANISM_TAXID: 2265; SOURCE 4 GENE: GLKA, OCC_09701; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET17 KEYWDS ADP-DEPENDENT, GLUCOKINASE, TRANSFERASE, RIBOKINASE SUPERFAMILY EXPDTA X-RAY DIFFRACTION AUTHOR A.HERRERA-MORANDE,V.CASTRO-FERNANDEZ,F.MERINO,C.A.RAMIREZ-SARMIENTO, AUTHOR 2 F.J.FERNANDEZ,V.GUIXE,M.C.VEGA REVDAT 4 17-JAN-24 5O5Z 1 HETSYN REVDAT 3 29-JUL-20 5O5Z 1 COMPND REMARK HETNAM SITE REVDAT 2 08-MAY-19 5O5Z 1 JRNL REVDAT 1 24-OCT-18 5O5Z 0 JRNL AUTH A.HERRERA-MORANDE,V.CASTRO-FERNANDEZ,F.MERINO, JRNL AUTH 2 C.A.RAMIREZ-SARMIENTO,F.J.FERNANDEZ,M.C.VEGA,V.GUIXE JRNL TITL PROTEIN TOPOLOGY DETERMINES SUBSTRATE-BINDING MECHANISM IN JRNL TITL 2 HOMOLOGOUS ENZYMES. JRNL REF BIOCHIM BIOPHYS ACTA GEN V.1862 2869 2018 JRNL REF 2 SUBJ JRNL REFN ISSN 1872-8006 JRNL PMID 30251675 JRNL DOI 10.1016/J.BBAGEN.2018.09.007 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.A.RIVAS-PARDO,A.HERRERA-MORANDE,V.CASTRO-FERNANDEZ, REMARK 1 AUTH 2 F.J.FERNANDEZ,M.C.VEGA,V.GUIXE REMARK 1 TITL CRYSTAL STRUCTURE, SAXS AND KINETIC MECHANISM OF REMARK 1 TITL 2 HYPERTHERMOPHILIC ADP-DEPENDENT GLUCOKINASE FROM REMARK 1 TITL 3 THERMOCOCCUS LITORALIS REVEAL A CONSERVED MECHANISM FOR REMARK 1 TITL 4 CATALYSIS. REMARK 1 REF PLOS ONE V. 8 66687 2013 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 23818958 REMARK 1 DOI 10.1371/JOURNAL.PONE.0066687 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.7464 - 6.0190 1.00 2713 159 0.1744 0.1950 REMARK 3 2 6.0190 - 4.7781 1.00 2619 155 0.1732 0.2034 REMARK 3 3 4.7781 - 4.1743 1.00 2556 161 0.1498 0.1780 REMARK 3 4 4.1743 - 3.7927 1.00 2583 118 0.1670 0.1639 REMARK 3 5 3.7927 - 3.5209 1.00 2580 133 0.1850 0.2173 REMARK 3 6 3.5209 - 3.3134 1.00 2559 122 0.2017 0.2568 REMARK 3 7 3.3134 - 3.1474 1.00 2541 145 0.2214 0.2629 REMARK 3 8 3.1474 - 3.0104 1.00 2551 122 0.2473 0.3033 REMARK 3 9 3.0104 - 2.8945 1.00 2555 141 0.2333 0.2893 REMARK 3 10 2.8945 - 2.7947 1.00 2535 113 0.2261 0.2355 REMARK 3 11 2.7947 - 2.7073 1.00 2547 124 0.2431 0.2757 REMARK 3 12 2.7073 - 2.6299 1.00 2520 137 0.2369 0.2593 REMARK 3 13 2.6299 - 2.5607 1.00 2532 147 0.2645 0.3103 REMARK 3 14 2.5607 - 2.4982 1.00 2513 129 0.2828 0.3016 REMARK 3 15 2.4982 - 2.4414 1.00 2523 127 0.3096 0.3422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7489 REMARK 3 ANGLE : 0.612 10118 REMARK 3 CHIRALITY : 0.045 1115 REMARK 3 PLANARITY : 0.003 1299 REMARK 3 DIHEDRAL : 15.472 4493 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 117.0487 101.7273 109.2050 REMARK 3 T TENSOR REMARK 3 T11: 0.3727 T22: 0.4212 REMARK 3 T33: 0.3021 T12: -0.0632 REMARK 3 T13: -0.0090 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 3.1949 L22: 2.1948 REMARK 3 L33: 2.2083 L12: -1.4369 REMARK 3 L13: 0.4959 L23: 0.1390 REMARK 3 S TENSOR REMARK 3 S11: -0.1452 S12: -0.0538 S13: 0.0413 REMARK 3 S21: 0.3084 S22: 0.1348 S23: -0.2066 REMARK 3 S31: 0.0303 S32: 0.4214 S33: 0.0350 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 114.0541 99.7106 93.7563 REMARK 3 T TENSOR REMARK 3 T11: 0.2859 T22: 0.3574 REMARK 3 T33: 0.3112 T12: 0.0410 REMARK 3 T13: 0.0149 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.2700 L22: 2.2550 REMARK 3 L33: 2.7101 L12: -0.7942 REMARK 3 L13: 0.2300 L23: -0.6634 REMARK 3 S TENSOR REMARK 3 S11: 0.1098 S12: 0.2859 S13: -0.0152 REMARK 3 S21: -0.1193 S22: -0.0890 S23: -0.0975 REMARK 3 S31: 0.0802 S32: 0.1735 S33: -0.0202 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.9501 118.8280 102.0044 REMARK 3 T TENSOR REMARK 3 T11: 0.3263 T22: 0.3656 REMARK 3 T33: 0.3428 T12: 0.1039 REMARK 3 T13: -0.0374 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 4.9636 L22: 4.7182 REMARK 3 L33: 6.4100 L12: 1.5919 REMARK 3 L13: -1.9044 L23: -0.3603 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.1648 S13: 0.3033 REMARK 3 S21: -0.2373 S22: 0.0207 S23: 0.0885 REMARK 3 S31: -0.4546 S32: -0.3633 S33: 0.0459 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 114.3030 134.9339 143.2002 REMARK 3 T TENSOR REMARK 3 T11: 0.5920 T22: 0.4092 REMARK 3 T33: 0.7097 T12: 0.0638 REMARK 3 T13: 0.0262 T23: -0.1549 REMARK 3 L TENSOR REMARK 3 L11: 1.5777 L22: 1.7961 REMARK 3 L33: 3.2203 L12: 0.0148 REMARK 3 L13: 0.5488 L23: -1.2221 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: -0.0839 S13: 0.3434 REMARK 3 S21: 0.1658 S22: 0.0357 S23: -0.2769 REMARK 3 S31: -0.6701 S32: 0.3009 S33: 0.0812 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.7168 127.5221 151.4171 REMARK 3 T TENSOR REMARK 3 T11: 0.5060 T22: 0.4419 REMARK 3 T33: 0.4770 T12: 0.1257 REMARK 3 T13: 0.0499 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 3.4828 L22: 1.7707 REMARK 3 L33: 3.1560 L12: -0.8069 REMARK 3 L13: 1.5502 L23: -0.0626 REMARK 3 S TENSOR REMARK 3 S11: -0.2073 S12: -0.5552 S13: 0.2407 REMARK 3 S21: 0.1958 S22: 0.1433 S23: 0.1566 REMARK 3 S31: -0.3549 S32: -0.5562 S33: 0.0551 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 190 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.6413 120.9940 145.4883 REMARK 3 T TENSOR REMARK 3 T11: 0.3923 T22: 0.5021 REMARK 3 T33: 0.4155 T12: 0.0906 REMARK 3 T13: 0.0548 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 2.6713 L22: 1.9784 REMARK 3 L33: 2.2367 L12: -0.6370 REMARK 3 L13: 0.5878 L23: -0.5339 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.2245 S13: 0.1862 REMARK 3 S21: -0.0139 S22: 0.0362 S23: 0.1045 REMARK 3 S31: -0.1373 S32: -0.0958 S33: -0.0345 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 255 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 113.2568 121.7781 129.4055 REMARK 3 T TENSOR REMARK 3 T11: 0.3061 T22: 0.3001 REMARK 3 T33: 0.3318 T12: 0.0228 REMARK 3 T13: -0.0180 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 3.2073 L22: 2.5438 REMARK 3 L33: 4.3184 L12: 0.8300 REMARK 3 L13: -1.1722 L23: -1.8311 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.2327 S13: 0.1013 REMARK 3 S21: 0.0219 S22: 0.0341 S23: -0.0907 REMARK 3 S31: -0.1198 S32: 0.2620 S33: 0.0008 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 385 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): 109.4390 139.9492 129.9902 REMARK 3 T TENSOR REMARK 3 T11: 0.6639 T22: 0.3092 REMARK 3 T33: 0.6503 T12: 0.0631 REMARK 3 T13: 0.0055 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 4.1799 L22: 4.1438 REMARK 3 L33: 8.2224 L12: 1.7335 REMARK 3 L13: -1.5941 L23: 0.4619 REMARK 3 S TENSOR REMARK 3 S11: 0.3400 S12: -0.0595 S13: 0.5807 REMARK 3 S21: -0.3901 S22: -0.0369 S23: 0.1179 REMARK 3 S31: -1.2573 S32: -0.1631 S33: -0.2790 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200004960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.8233 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED CHANNEL-CUT REMARK 200 SI[111] MONOCHROMATOR REMARK 200 OPTICS : CRYOGENICALLY COOLED CHANNEL CUT REMARK 200 SI[111] CRYSTAL MONOCHROMATOR, A REMARK 200 CONVEX PREFOCUSSING MIRROR AND A REMARK 200 KIRKPATRICK-BAEZ PAIR OF REMARK 200 FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40470 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.441 REMARK 200 RESOLUTION RANGE LOW (A) : 58.729 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07650 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : 0.80700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: WWPDB 4B8R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 20% (W/V) PEG REMARK 280 3350, 30 MM GLUCOSE, 5 MM MG2+-ADPBETAS, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.14100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.76700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.91750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.76700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.14100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.91750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 455 REMARK 465 PHE A 456 REMARK 465 GLU A 457 REMARK 465 ASN A 458 REMARK 465 GLY A 459 REMARK 465 LEU A 460 REMARK 465 ILE A 461 REMARK 465 ASP A 462 REMARK 465 MET A 463 REMARK 465 VAL A 464 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 452 REMARK 465 PHE B 453 REMARK 465 THR B 454 REMARK 465 GLU B 455 REMARK 465 PHE B 456 REMARK 465 GLU B 457 REMARK 465 ASN B 458 REMARK 465 GLY B 459 REMARK 465 LEU B 460 REMARK 465 ILE B 461 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 VAL B 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 406 O HOH A 601 2.19 REMARK 500 NZ LYS B 45 O TRP B 111 2.19 REMARK 500 O MET A 219 NH1 ARG A 224 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 73 15.94 56.14 REMARK 500 PHE A 196 -122.93 57.46 REMARK 500 ASN A 204 -170.00 -173.68 REMARK 500 ASN B 70 76.97 -119.78 REMARK 500 PHE B 196 -120.15 56.40 REMARK 500 ASN B 204 -171.31 -172.25 REMARK 500 REMARK 500 REMARK: NULL DBREF 5O5Z A 1 362 UNP Q7M537 GLKA_THELN 1 362 DBREF 5O5Z A 366 398 UNP Q7M537 GLKA_THELN 430 462 DBREF 5O5Z A 404 464 UNP Q7M537 GLKA_THELN 368 428 DBREF 5O5Z B 1 362 UNP Q7M537 GLKA_THELN 1 362 DBREF 5O5Z B 366 398 UNP Q7M537 GLKA_THELN 430 462 DBREF 5O5Z B 404 464 UNP Q7M537 GLKA_THELN 368 428 SEQADV 5O5Z ALA A 49 UNP Q7M537 LYS 49 CONFLICT SEQADV 5O5Z LYS A 59 UNP Q7M537 ILE 59 CONFLICT SEQADV 5O5Z LYS A 256 UNP Q7M537 ARG 256 CONFLICT SEQADV 5O5Z GLY A 363 UNP Q7M537 LINKER SEQADV 5O5Z GLY A 364 UNP Q7M537 LINKER SEQADV 5O5Z GLY A 365 UNP Q7M537 LINKER SEQADV 5O5Z GLY A 399 UNP Q7M537 LINKER SEQADV 5O5Z GLY A 400 UNP Q7M537 LINKER SEQADV 5O5Z GLY A 401 UNP Q7M537 LINKER SEQADV 5O5Z GLY A 402 UNP Q7M537 LINKER SEQADV 5O5Z GLY A 403 UNP Q7M537 LINKER SEQADV 5O5Z ALA B 49 UNP Q7M537 LYS 49 CONFLICT SEQADV 5O5Z LYS B 59 UNP Q7M537 ILE 59 CONFLICT SEQADV 5O5Z LYS B 256 UNP Q7M537 ARG 256 CONFLICT SEQADV 5O5Z GLY B 363 UNP Q7M537 LINKER SEQADV 5O5Z GLY B 364 UNP Q7M537 LINKER SEQADV 5O5Z GLY B 365 UNP Q7M537 LINKER SEQADV 5O5Z GLY B 399 UNP Q7M537 LINKER SEQADV 5O5Z GLY B 400 UNP Q7M537 LINKER SEQADV 5O5Z GLY B 401 UNP Q7M537 LINKER SEQADV 5O5Z GLY B 402 UNP Q7M537 LINKER SEQADV 5O5Z GLY B 403 UNP Q7M537 LINKER SEQRES 1 A 464 MET LYS GLU SER LEU LYS ASP ARG ILE ARG LEU TRP LYS SEQRES 2 A 464 ARG LEU TYR VAL ASN ALA PHE GLU ASN ALA LEU ASN ALA SEQRES 3 A 464 ILE PRO ASN VAL LYS GLY VAL LEU LEU ALA TYR ASN THR SEQRES 4 A 464 ASN ILE ASP ALA ILE LYS TYR LEU ASP ALA ASP ASP LEU SEQRES 5 A 464 GLU LYS ARG VAL THR GLU LYS GLY LYS GLU LYS VAL PHE SEQRES 6 A 464 GLU ILE ILE GLU ASN PRO PRO GLU LYS ILE SER SER ILE SEQRES 7 A 464 GLU GLU LEU LEU GLY GLY ILE LEU ARG SER ILE LYS LEU SEQRES 8 A 464 GLY LYS ALA MET GLU TRP PHE VAL GLU SER GLU GLU VAL SEQRES 9 A 464 ARG ARG TYR LEU ARG GLU TRP GLY TRP ASP GLU LEU ARG SEQRES 10 A 464 ILE GLY GLY GLN ALA GLY ILE MET ALA ASN LEU LEU GLY SEQRES 11 A 464 GLY VAL TYR ARG ILE PRO THR ILE VAL HIS VAL PRO GLN SEQRES 12 A 464 ASN PRO LYS LEU GLN ALA GLU LEU PHE VAL ASP GLY PRO SEQRES 13 A 464 ILE TYR VAL PRO VAL PHE GLU GLY ASN LYS LEU LYS LEU SEQRES 14 A 464 VAL HIS PRO LYS ASP ALA ILE ALA GLU GLU GLU GLU LEU SEQRES 15 A 464 ILE HIS TYR ILE TYR GLU PHE PRO ARG GLY PHE GLN VAL SEQRES 16 A 464 PHE ASP VAL GLN ALA PRO ARG GLU ASN ARG PHE ILE ALA SEQRES 17 A 464 ASN ALA ASP ASP TYR ASN ALA ARG VAL TYR MET ARG ARG SEQRES 18 A 464 GLU PHE ARG GLU GLY PHE GLU GLU ILE THR ARG ASN VAL SEQRES 19 A 464 GLU LEU ALA ILE ILE SER GLY LEU GLN VAL LEU LYS GLU SEQRES 20 A 464 TYR TYR PRO ASP GLY THR THR TYR LYS ASP VAL LEU ASP SEQRES 21 A 464 ARG VAL GLU SER HIS LEU ASN ILE LEU ASN ARG TYR ASN SEQRES 22 A 464 VAL LYS SER HIS PHE GLU PHE ALA TYR THR ALA ASN ARG SEQRES 23 A 464 ARG VAL ARG GLU ALA LEU VAL GLU LEU LEU PRO LYS PHE SEQRES 24 A 464 THR SER VAL GLY LEU ASN GLU VAL GLU LEU ALA SER ILE SEQRES 25 A 464 MET GLU ILE ILE GLY ASP GLU GLU LEU ALA LYS GLU VAL SEQRES 26 A 464 LEU GLU GLY HIS ILE PHE SER VAL ILE ASP ALA MET ASN SEQRES 27 A 464 VAL LEU MET ASP GLU THR GLY ILE GLU ARG ILE HIS PHE SEQRES 28 A 464 HIS THR TYR GLY TYR TYR LEU ALA LEU THR GLN GLY GLY SEQRES 29 A 464 GLY ARG GLN LEU ALA PHE VAL PRO THR LYS ILE VAL ALA SEQRES 30 A 464 SER PRO LYS SER THR VAL GLY ILE GLY ASP THR ILE SER SEQRES 31 A 464 SER SER ALA PHE VAL SER GLU PHE GLY GLY GLY GLY GLY SEQRES 32 A 464 VAL ARG ASP ALA LEU LEU PHE ALA SER LEU ALA ALA ALA SEQRES 33 A 464 ALA LYS ALA MET LYS GLY ASN LEU GLU ARG ILE GLU GLN SEQRES 34 A 464 ILE ARG ASP ALA LEU SER VAL PRO THR ASN GLU ARG ALA SEQRES 35 A 464 ILE VAL LEU GLU GLU GLU LEU GLU LYS GLU PHE THR GLU SEQRES 36 A 464 PHE GLU ASN GLY LEU ILE ASP MET VAL SEQRES 1 B 464 MET LYS GLU SER LEU LYS ASP ARG ILE ARG LEU TRP LYS SEQRES 2 B 464 ARG LEU TYR VAL ASN ALA PHE GLU ASN ALA LEU ASN ALA SEQRES 3 B 464 ILE PRO ASN VAL LYS GLY VAL LEU LEU ALA TYR ASN THR SEQRES 4 B 464 ASN ILE ASP ALA ILE LYS TYR LEU ASP ALA ASP ASP LEU SEQRES 5 B 464 GLU LYS ARG VAL THR GLU LYS GLY LYS GLU LYS VAL PHE SEQRES 6 B 464 GLU ILE ILE GLU ASN PRO PRO GLU LYS ILE SER SER ILE SEQRES 7 B 464 GLU GLU LEU LEU GLY GLY ILE LEU ARG SER ILE LYS LEU SEQRES 8 B 464 GLY LYS ALA MET GLU TRP PHE VAL GLU SER GLU GLU VAL SEQRES 9 B 464 ARG ARG TYR LEU ARG GLU TRP GLY TRP ASP GLU LEU ARG SEQRES 10 B 464 ILE GLY GLY GLN ALA GLY ILE MET ALA ASN LEU LEU GLY SEQRES 11 B 464 GLY VAL TYR ARG ILE PRO THR ILE VAL HIS VAL PRO GLN SEQRES 12 B 464 ASN PRO LYS LEU GLN ALA GLU LEU PHE VAL ASP GLY PRO SEQRES 13 B 464 ILE TYR VAL PRO VAL PHE GLU GLY ASN LYS LEU LYS LEU SEQRES 14 B 464 VAL HIS PRO LYS ASP ALA ILE ALA GLU GLU GLU GLU LEU SEQRES 15 B 464 ILE HIS TYR ILE TYR GLU PHE PRO ARG GLY PHE GLN VAL SEQRES 16 B 464 PHE ASP VAL GLN ALA PRO ARG GLU ASN ARG PHE ILE ALA SEQRES 17 B 464 ASN ALA ASP ASP TYR ASN ALA ARG VAL TYR MET ARG ARG SEQRES 18 B 464 GLU PHE ARG GLU GLY PHE GLU GLU ILE THR ARG ASN VAL SEQRES 19 B 464 GLU LEU ALA ILE ILE SER GLY LEU GLN VAL LEU LYS GLU SEQRES 20 B 464 TYR TYR PRO ASP GLY THR THR TYR LYS ASP VAL LEU ASP SEQRES 21 B 464 ARG VAL GLU SER HIS LEU ASN ILE LEU ASN ARG TYR ASN SEQRES 22 B 464 VAL LYS SER HIS PHE GLU PHE ALA TYR THR ALA ASN ARG SEQRES 23 B 464 ARG VAL ARG GLU ALA LEU VAL GLU LEU LEU PRO LYS PHE SEQRES 24 B 464 THR SER VAL GLY LEU ASN GLU VAL GLU LEU ALA SER ILE SEQRES 25 B 464 MET GLU ILE ILE GLY ASP GLU GLU LEU ALA LYS GLU VAL SEQRES 26 B 464 LEU GLU GLY HIS ILE PHE SER VAL ILE ASP ALA MET ASN SEQRES 27 B 464 VAL LEU MET ASP GLU THR GLY ILE GLU ARG ILE HIS PHE SEQRES 28 B 464 HIS THR TYR GLY TYR TYR LEU ALA LEU THR GLN GLY GLY SEQRES 29 B 464 GLY ARG GLN LEU ALA PHE VAL PRO THR LYS ILE VAL ALA SEQRES 30 B 464 SER PRO LYS SER THR VAL GLY ILE GLY ASP THR ILE SER SEQRES 31 B 464 SER SER ALA PHE VAL SER GLU PHE GLY GLY GLY GLY GLY SEQRES 32 B 464 VAL ARG ASP ALA LEU LEU PHE ALA SER LEU ALA ALA ALA SEQRES 33 B 464 ALA LYS ALA MET LYS GLY ASN LEU GLU ARG ILE GLU GLN SEQRES 34 B 464 ILE ARG ASP ALA LEU SER VAL PRO THR ASN GLU ARG ALA SEQRES 35 B 464 ILE VAL LEU GLU GLU GLU LEU GLU LYS GLU PHE THR GLU SEQRES 36 B 464 PHE GLU ASN GLY LEU ILE ASP MET VAL HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET SO4 A 507 5 HET AT4 A 508 27 HET GOL B 501 6 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HET GLC B 505 12 HET AT4 B 506 27 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM AT4 5'-O-[(R)-HYDROXY(THIOPHOSPHONOOXY)PHOSPHORYL]ADENOSINE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN AT4 ADENOSINE 5'-O-(2-THIODIPHOSPHATE) HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GOL 10(C3 H8 O3) FORMUL 9 SO4 O4 S 2- FORMUL 10 AT4 2(C10 H15 N5 O9 P2 S) FORMUL 15 GLC C6 H12 O6 FORMUL 17 HOH *71(H2 O) HELIX 1 AA1 LYS A 2 ILE A 27 1 26 HELIX 2 AA2 PRO A 28 VAL A 30 5 3 HELIX 3 AA3 ASP A 48 GLY A 60 1 13 HELIX 4 AA4 GLY A 60 ASN A 70 1 11 HELIX 5 AA5 SER A 77 GLY A 92 1 16 HELIX 6 AA6 SER A 101 GLY A 112 1 12 HELIX 7 AA7 GLY A 120 GLY A 130 1 11 HELIX 8 AA8 PRO A 145 GLU A 150 1 6 HELIX 9 AA9 HIS A 171 ALA A 175 5 5 HELIX 10 AB1 TYR A 213 VAL A 217 5 5 HELIX 11 AB2 ARG A 220 GLY A 226 1 7 HELIX 12 AB3 GLY A 226 ARG A 232 1 7 HELIX 13 AB4 GLY A 241 LEU A 245 5 5 HELIX 14 AB5 THR A 254 TYR A 272 1 19 HELIX 15 AB6 ASN A 285 LEU A 296 1 12 HELIX 16 AB7 PRO A 297 PHE A 299 5 3 HELIX 17 AB8 GLU A 306 GLY A 317 1 12 HELIX 18 AB9 ASP A 318 GLU A 327 1 10 HELIX 19 AC1 HIS A 329 GLY A 345 1 17 HELIX 20 AC2 GLY A 384 GLY A 399 1 16 HELIX 21 AC3 GLY A 403 GLY A 422 1 20 HELIX 22 AC4 ARG A 426 VAL A 436 5 11 HELIX 23 AC5 ASN A 439 PHE A 453 1 15 HELIX 24 AC6 SER B 4 ILE B 27 1 24 HELIX 25 AC7 PRO B 28 VAL B 30 5 3 HELIX 26 AC8 ASP B 48 GLY B 60 1 13 HELIX 27 AC9 GLY B 60 ASN B 70 1 11 HELIX 28 AD1 SER B 77 GLY B 92 1 16 HELIX 29 AD2 SER B 101 GLY B 112 1 12 HELIX 30 AD3 GLY B 120 GLY B 130 1 11 HELIX 31 AD4 PRO B 145 GLU B 150 1 6 HELIX 32 AD5 HIS B 171 ALA B 175 5 5 HELIX 33 AD6 TYR B 213 VAL B 217 5 5 HELIX 34 AD7 ARG B 220 GLY B 226 1 7 HELIX 35 AD8 GLY B 226 ARG B 232 1 7 HELIX 36 AD9 GLY B 241 LEU B 245 5 5 HELIX 37 AE1 THR B 254 TYR B 272 1 19 HELIX 38 AE2 ASN B 285 LEU B 296 1 12 HELIX 39 AE3 PRO B 297 PHE B 299 5 3 HELIX 40 AE4 ASN B 305 GLY B 317 1 13 HELIX 41 AE5 ASP B 318 GLU B 327 1 10 HELIX 42 AE6 HIS B 329 GLY B 345 1 17 HELIX 43 AE7 GLY B 384 GLY B 399 1 16 HELIX 44 AE8 GLY B 403 GLY B 422 1 20 HELIX 45 AE9 ILE B 427 ALA B 433 1 7 HELIX 46 AF1 LEU B 434 VAL B 436 5 3 HELIX 47 AF2 ASN B 439 LYS B 451 1 13 SHEET 1 AA110 LYS A 166 VAL A 170 0 SHEET 2 AA110 ILE A 157 GLU A 163 -1 N VAL A 161 O LYS A 168 SHEET 3 AA110 THR A 137 VAL A 139 1 N THR A 137 O TYR A 158 SHEET 4 AA110 VAL A 33 ALA A 36 1 N LEU A 35 O ILE A 138 SHEET 5 AA110 LEU A 236 ILE A 239 1 O ILE A 238 N LEU A 34 SHEET 6 AA110 LYS A 275 GLU A 279 1 O HIS A 277 N ILE A 239 SHEET 7 AA110 SER A 301 ASN A 305 1 O SER A 301 N PHE A 278 SHEET 8 AA110 ARG A 348 THR A 353 1 O HIS A 350 N VAL A 302 SHEET 9 AA110 TYR A 356 THR A 361 -1 O LEU A 358 N PHE A 351 SHEET 10 AA110 GLN A 367 PRO A 372 -1 O GLN A 367 N THR A 361 SHEET 1 AA2 6 LYS A 74 ILE A 75 0 SHEET 2 AA2 6 MET A 95 VAL A 99 1 O PHE A 98 N ILE A 75 SHEET 3 AA2 6 ASN A 204 ALA A 210 1 O ASN A 209 N VAL A 99 SHEET 4 AA2 6 ILE A 183 PHE A 189 -1 N TYR A 187 O PHE A 206 SHEET 5 AA2 6 ASN A 40 TYR A 46 1 N ALA A 43 O ILE A 186 SHEET 6 AA2 6 GLU A 115 GLY A 119 -1 O ARG A 117 N ASP A 42 SHEET 1 AA3 2 GLN A 194 VAL A 195 0 SHEET 2 AA3 2 VAL A 198 GLN A 199 -1 O VAL A 198 N VAL A 195 SHEET 1 AA410 LYS B 166 VAL B 170 0 SHEET 2 AA410 ILE B 157 GLU B 163 -1 N VAL B 161 O LYS B 168 SHEET 3 AA410 THR B 137 VAL B 139 1 N THR B 137 O TYR B 158 SHEET 4 AA410 VAL B 33 ALA B 36 1 N VAL B 33 O ILE B 138 SHEET 5 AA410 LEU B 236 ILE B 239 1 O ILE B 238 N LEU B 34 SHEET 6 AA410 LYS B 275 GLU B 279 1 O HIS B 277 N ILE B 239 SHEET 7 AA410 SER B 301 LEU B 304 1 O GLY B 303 N PHE B 278 SHEET 8 AA410 ARG B 348 THR B 353 1 O HIS B 350 N VAL B 302 SHEET 9 AA410 TYR B 356 THR B 361 -1 O LEU B 358 N PHE B 351 SHEET 10 AA410 GLN B 367 PRO B 372 -1 O ALA B 369 N ALA B 359 SHEET 1 AA5 5 MET B 95 PHE B 98 0 SHEET 2 AA5 5 ASN B 204 ASN B 209 1 O ASN B 209 N TRP B 97 SHEET 3 AA5 5 ILE B 183 PHE B 189 -1 N TYR B 185 O ALA B 208 SHEET 4 AA5 5 ASN B 40 TYR B 46 1 N LYS B 45 O ILE B 186 SHEET 5 AA5 5 GLU B 115 GLY B 119 -1 O ARG B 117 N ASP B 42 SHEET 1 AA6 2 GLN B 194 VAL B 195 0 SHEET 2 AA6 2 VAL B 198 GLN B 199 -1 O VAL B 198 N VAL B 195 CISPEP 1 ALA A 36 TYR A 37 0 7.67 CISPEP 2 ALA B 36 TYR B 37 0 7.60 CRYST1 96.282 97.835 113.534 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010386 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008808 0.00000