HEADER HYDROLASE 05-JUN-17 5O63 TITLE CRYSTAL STRUCTURE OF UBALAI RESTRICTION ENDONUCLEASE B3 DOMAIN DOMAIN TITLE 2 (MUTANT L24M L53M L95M) WITH COGNATE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESTRICTION ENDONUCLEASE UBALAI; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL B3 DNA BINDING DOMAIN; COMPND 5 EC: 3.1.21.4; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: GENBANK ACCESSION-MF085529; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*C*G*C*C*A*G*G*G*C*)-3'); COMPND 10 CHAIN: C, E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*G*C*C*C*T*G*G*C*G*)-3'); COMPND 14 CHAIN: D, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: DH10B; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD24; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS RESTRICTION ENDONUCLEASE, B3 DOMAIN, PROTEIN-DNA COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.TAMULAITIENE,G.SASNAUSKAS,V.SIKSNYS REVDAT 2 04-OCT-17 5O63 1 JRNL REVDAT 1 02-AUG-17 5O63 0 JRNL AUTH G.SASNAUSKAS,G.TAMULAITIENE,G.TAMULAITIS,J.CALYSEVA,M.LAIME, JRNL AUTH 2 R.RIMSELIENE,A.LUBYS,V.SIKSNYS JRNL TITL UBALAI IS A MONOMERIC TYPE IIE RESTRICTION ENZYME. JRNL REF NUCLEIC ACIDS RES. V. 45 9583 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28934493 JRNL DOI 10.1093/NAR/GKX634 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.3 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 63634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 12080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.7045 - 4.9702 0.99 3592 421 0.1488 0.1532 REMARK 3 2 4.9702 - 3.9454 1.00 3688 366 0.1274 0.1476 REMARK 3 3 3.9454 - 3.4468 0.97 3525 408 0.1455 0.1692 REMARK 3 4 3.4468 - 3.1317 0.99 3572 406 0.1595 0.1889 REMARK 3 5 3.1317 - 2.9073 1.00 3644 387 0.1683 0.2118 REMARK 3 6 2.9073 - 2.7359 1.00 3702 372 0.1698 0.1936 REMARK 3 7 2.7359 - 2.5988 1.00 3627 430 0.1663 0.1911 REMARK 3 8 2.5988 - 2.4857 0.99 3622 426 0.1642 0.2097 REMARK 3 9 2.4857 - 2.3900 0.98 3587 371 0.1643 0.2144 REMARK 3 10 2.3900 - 2.3076 0.99 3620 448 0.1651 0.2055 REMARK 3 11 2.3076 - 2.2354 1.00 3638 380 0.1598 0.1977 REMARK 3 12 2.2354 - 2.1715 1.00 3619 411 0.1624 0.1869 REMARK 3 13 2.1715 - 2.1143 1.00 3586 464 0.1629 0.2068 REMARK 3 14 2.1143 - 2.0627 0.99 3580 435 0.1623 0.1917 REMARK 3 15 2.0627 - 2.0159 1.00 3626 399 0.1629 0.2229 REMARK 3 16 2.0159 - 1.9730 1.00 3660 388 0.1535 0.1751 REMARK 3 17 1.9730 - 1.9335 0.99 3648 351 0.1586 0.2186 REMARK 3 18 1.9335 - 1.8970 0.97 3536 402 0.1604 0.2076 REMARK 3 19 1.8970 - 1.8631 0.99 3595 407 0.1618 0.2058 REMARK 3 20 1.8631 - 1.8315 1.00 3639 391 0.1676 0.2195 REMARK 3 21 1.8315 - 1.8020 1.00 3683 397 0.1717 0.1953 REMARK 3 22 1.8020 - 1.7743 1.00 3571 400 0.1839 0.2306 REMARK 3 23 1.7743 - 1.7482 0.99 3616 459 0.1809 0.2197 REMARK 3 24 1.7482 - 1.7235 0.99 3637 398 0.1745 0.2279 REMARK 3 25 1.7235 - 1.7003 0.99 3609 387 0.1812 0.2083 REMARK 3 26 1.7003 - 1.6782 1.00 3686 388 0.1930 0.2299 REMARK 3 27 1.6782 - 1.6572 0.99 3645 383 0.2006 0.2441 REMARK 3 28 1.6572 - 1.6372 1.00 3603 413 0.2083 0.2432 REMARK 3 29 1.6372 - 1.6182 0.99 3705 396 0.2193 0.2779 REMARK 3 30 1.6182 - 1.6000 0.99 3590 396 0.2318 0.2828 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 3689 REMARK 3 ANGLE : 1.771 5189 REMARK 3 CHIRALITY : 0.099 558 REMARK 3 PLANARITY : 0.011 546 REMARK 3 DIHEDRAL : 19.595 1423 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -7.3892 -8.9190 18.3026 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.1501 REMARK 3 T33: 0.1884 T12: 0.0006 REMARK 3 T13: 0.0018 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.0386 L22: 1.7970 REMARK 3 L33: 2.5115 L12: 0.8597 REMARK 3 L13: 0.0924 L23: -0.5958 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: 0.0427 S13: -0.1291 REMARK 3 S21: -0.0314 S22: 0.0033 S23: -0.0880 REMARK 3 S31: 0.3603 S32: 0.0612 S33: -0.0077 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -8.8516 8.7455 -10.5315 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.1806 REMARK 3 T33: 0.1477 T12: 0.0407 REMARK 3 T13: 0.0109 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.7446 L22: 2.5043 REMARK 3 L33: 2.1794 L12: -0.2242 REMARK 3 L13: 0.0540 L23: 0.8986 REMARK 3 S TENSOR REMARK 3 S11: 0.0818 S12: 0.0289 S13: -0.0062 REMARK 3 S21: -0.1901 S22: -0.1554 S23: -0.0258 REMARK 3 S31: -0.1625 S32: -0.1561 S33: -0.0172 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 0.3571 9.7239 18.3101 REMARK 3 T TENSOR REMARK 3 T11: 0.3186 T22: 0.2495 REMARK 3 T33: 0.2153 T12: -0.1503 REMARK 3 T13: -0.0580 T23: 0.0558 REMARK 3 L TENSOR REMARK 3 L11: 0.6888 L22: 0.7119 REMARK 3 L33: 0.9002 L12: -0.2329 REMARK 3 L13: 0.1301 L23: 0.2557 REMARK 3 S TENSOR REMARK 3 S11: 0.0706 S12: 0.1585 S13: 0.1104 REMARK 3 S21: 0.2917 S22: -0.1373 S23: -0.1731 REMARK 3 S31: -0.2795 S32: 0.4333 S33: 0.0172 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -2.9303 10.0896 19.5290 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.2292 REMARK 3 T33: 0.2023 T12: -0.0601 REMARK 3 T13: -0.0296 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.3890 L22: 0.2859 REMARK 3 L33: 0.4697 L12: 0.1687 REMARK 3 L13: -0.1759 L23: 0.2318 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: 0.0195 S13: 0.0495 REMARK 3 S21: 0.1998 S22: -0.0372 S23: 0.0246 REMARK 3 S31: -0.6508 S32: 0.3697 S33: 0.0027 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -5.7471 -11.2062 -10.0617 REMARK 3 T TENSOR REMARK 3 T11: 0.4154 T22: 0.2246 REMARK 3 T33: 0.2326 T12: 0.0619 REMARK 3 T13: -0.0271 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.6608 L22: 0.8629 REMARK 3 L33: 0.1840 L12: 0.4739 REMARK 3 L13: 0.2982 L23: 0.0329 REMARK 3 S TENSOR REMARK 3 S11: 0.2546 S12: -0.0569 S13: -0.1582 REMARK 3 S21: 0.1028 S22: -0.0833 S23: -0.0149 REMARK 3 S31: 0.6420 S32: -0.0190 S33: 0.0576 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): -8.2847 -12.8783 -11.0287 REMARK 3 T TENSOR REMARK 3 T11: 0.4178 T22: 0.2193 REMARK 3 T33: 0.2403 T12: -0.0420 REMARK 3 T13: -0.0206 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.4195 L22: 0.3915 REMARK 3 L33: 0.5149 L12: -0.1904 REMARK 3 L13: 0.3367 L23: 0.1738 REMARK 3 S TENSOR REMARK 3 S11: 0.2157 S12: 0.0339 S13: -0.1472 REMARK 3 S21: -0.0497 S22: -0.1808 S23: -0.1045 REMARK 3 S31: 0.5916 S32: 0.0041 S33: -0.0185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200004982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.82661 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63722 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.346 REMARK 200 RESOLUTION RANGE LOW (A) : 94.583 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : 0.03500 REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : 0.44300 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION BUFFER WAS 0.15 M NA REMARK 280 -CITRATE (PH 5.6), 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.38750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.70150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.29150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.70150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.38750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.29150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 161 REMARK 465 SER A 162 REMARK 465 PRO A 163 REMARK 465 ALA A 164 REMARK 465 LEU A 165 REMARK 465 GLU A 166 REMARK 465 GLY A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 ASP A 174 REMARK 465 SER A 175 REMARK 465 PRO A 176 REMARK 465 ALA A 177 REMARK 465 LEU A 178 REMARK 465 GLU A 179 REMARK 465 GLY A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 HIS A 186 REMARK 465 SER B 162 REMARK 465 PRO B 163 REMARK 465 ALA B 164 REMARK 465 LEU B 165 REMARK 465 GLU B 166 REMARK 465 GLY B 167 REMARK 465 HIS B 168 REMARK 465 HIS B 169 REMARK 465 HIS B 170 REMARK 465 HIS B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 ASP B 174 REMARK 465 SER B 175 REMARK 465 PRO B 176 REMARK 465 ALA B 177 REMARK 465 LEU B 178 REMARK 465 GLU B 179 REMARK 465 GLY B 180 REMARK 465 HIS B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 CD OE1 OE2 REMARK 470 ARG A 13 CD NE CZ NH1 NH2 REMARK 470 LYS A 20 CD CE NZ REMARK 470 GLU A 45 CD OE1 OE2 REMARK 470 SER B 56 OG REMARK 470 ASP B 161 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 148 O HOH B 201 2.10 REMARK 500 O HOH E 132 O HOH F 116 2.13 REMARK 500 O HOH C 114 O HOH C 121 2.13 REMARK 500 O HOH B 317 O HOH D 135 2.14 REMARK 500 O HOH A 263 O HOH C 124 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 309 O HOH C 126 4455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C -1 O3' DC C -1 C3' -0.041 REMARK 500 DC E -3 O3' DC E -3 C3' 0.090 REMARK 500 DC E -3 C1' DC E -3 N1 0.106 REMARK 500 DC E -1 O3' DC E -1 C3' -0.037 REMARK 500 DG E 1 N7 DG E 1 C8 0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 126 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DC D -2 C1' - O4' - C4' ANGL. DEV. = -8.7 DEGREES REMARK 500 DC D -2 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG D 1 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC E -3 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC E -2 O3' - P - OP2 ANGL. DEV. = 8.4 DEGREES REMARK 500 DC E -2 O3' - P - OP1 ANGL. DEV. = -13.4 DEGREES REMARK 500 DC F -4 O4' - C1' - N1 ANGL. DEV. = -4.6 DEGREES REMARK 500 DC F -2 C1' - O4' - C4' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC F -2 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC F -2 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DG F 1 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG F 2 C3' - O3' - P ANGL. DEV. = 10.1 DEGREES REMARK 500 DC F 4 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 -165.93 -161.74 REMARK 500 ASP A 34 -168.31 -161.74 REMARK 500 ASP B 34 -167.86 -160.89 REMARK 500 ASP B 34 -165.84 -160.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 5O63 A 1 186 PDB 5O63 5O63 1 186 DBREF 5O63 B 1 186 PDB 5O63 5O63 1 186 DBREF 5O63 C -4 4 PDB 5O63 5O63 -4 4 DBREF 5O63 D -4 4 PDB 5O63 5O63 -4 4 DBREF 5O63 E -4 4 PDB 5O63 5O63 -4 4 DBREF 5O63 F -4 4 PDB 5O63 5O63 -4 4 SEQRES 1 A 186 MET ASN GLU LEU ILE LYS TYR ALA LYS GLU LEU VAL ARG SEQRES 2 A 186 SER ALA GLY LYS THR LEU LYS SER ALA ALA MET PHE ALA SEQRES 3 A 186 LYS VAL LEU THR PRO ASN ASP ASP SER GLY ARG HIS GLY SEQRES 4 A 186 VAL LEU VAL PRO THR GLU ALA TYR SER PHE PHE PRO ASP SEQRES 5 A 186 MET PRO ILE SER ASP PRO SER GLN ASN ALA THR SER ASN SEQRES 6 A 186 PHE PRO ALA PHE ASP SER LEU SER LYS THR HIS LYS THR SEQRES 7 A 186 LEU ALA TYR LYS TYR TYR GLU ARG TYR PRO GLU ARG ARG SEQRES 8 A 186 ILE THR ARG MET HIS GLY LEU LEU ASN GLU ARG ASN TYR SEQRES 9 A 186 ASP PRO ARG LEU THR ILE PHE LEU PHE ALA ARG HIS THR SEQRES 10 A 186 ASP GLY SER SER GLY TYR TYR PHE ASP CYS ALA ASN SER SEQRES 11 A 186 GLY SER GLY GLY ARG PHE GLU VAL LEU PHE ALA LEU CYS SEQRES 12 A 186 PHE GLY GLU ALA ILE SER PRO LYS ALA GLY LEU PHE VAL SEQRES 13 A 186 VAL ARG PRO ILE ASP SER PRO ALA LEU GLU GLY HIS HIS SEQRES 14 A 186 HIS HIS HIS HIS ASP SER PRO ALA LEU GLU GLY HIS HIS SEQRES 15 A 186 HIS HIS HIS HIS SEQRES 1 B 186 MET ASN GLU LEU ILE LYS TYR ALA LYS GLU LEU VAL ARG SEQRES 2 B 186 SER ALA GLY LYS THR LEU LYS SER ALA ALA MET PHE ALA SEQRES 3 B 186 LYS VAL LEU THR PRO ASN ASP ASP SER GLY ARG HIS GLY SEQRES 4 B 186 VAL LEU VAL PRO THR GLU ALA TYR SER PHE PHE PRO ASP SEQRES 5 B 186 MET PRO ILE SER ASP PRO SER GLN ASN ALA THR SER ASN SEQRES 6 B 186 PHE PRO ALA PHE ASP SER LEU SER LYS THR HIS LYS THR SEQRES 7 B 186 LEU ALA TYR LYS TYR TYR GLU ARG TYR PRO GLU ARG ARG SEQRES 8 B 186 ILE THR ARG MET HIS GLY LEU LEU ASN GLU ARG ASN TYR SEQRES 9 B 186 ASP PRO ARG LEU THR ILE PHE LEU PHE ALA ARG HIS THR SEQRES 10 B 186 ASP GLY SER SER GLY TYR TYR PHE ASP CYS ALA ASN SER SEQRES 11 B 186 GLY SER GLY GLY ARG PHE GLU VAL LEU PHE ALA LEU CYS SEQRES 12 B 186 PHE GLY GLU ALA ILE SER PRO LYS ALA GLY LEU PHE VAL SEQRES 13 B 186 VAL ARG PRO ILE ASP SER PRO ALA LEU GLU GLY HIS HIS SEQRES 14 B 186 HIS HIS HIS HIS ASP SER PRO ALA LEU GLU GLY HIS HIS SEQRES 15 B 186 HIS HIS HIS HIS SEQRES 1 C 9 DG DC DC DC DT DG DG DC DG SEQRES 1 D 9 DC DG DC DC DA DG DG DG DC SEQRES 1 E 9 DG DC DC DC DT DG DG DC DG SEQRES 1 F 9 DC DG DC DC DA DG DG DG DC FORMUL 7 HOH *419(H2 O) HELIX 1 AA1 ASN A 2 ALA A 15 1 14 HELIX 2 AA2 PRO A 43 PHE A 50 5 8 HELIX 3 AA3 HIS A 96 GLU A 101 5 6 HELIX 4 AA4 ARG A 135 GLY A 145 1 11 HELIX 5 AA5 ASN B 2 SER B 14 1 13 HELIX 6 AA6 PRO B 43 PHE B 50 5 8 HELIX 7 AA7 HIS B 96 GLU B 101 5 6 HELIX 8 AA8 ARG B 135 GLY B 145 1 11 SHEET 1 AA1 8 VAL A 40 LEU A 41 0 SHEET 2 AA1 8 GLU A 89 THR A 93 -1 O ILE A 92 N VAL A 40 SHEET 3 AA1 8 THR A 75 TYR A 84 -1 N LYS A 82 O ARG A 91 SHEET 4 AA1 8 ALA A 62 ASP A 70 -1 N SER A 64 O TYR A 81 SHEET 5 AA1 8 SER A 121 ALA A 128 1 O PHE A 125 N PHE A 69 SHEET 6 AA1 8 LEU A 108 HIS A 116 -1 N ILE A 110 O ASP A 126 SHEET 7 AA1 8 LEU A 19 VAL A 28 -1 N LYS A 20 O ARG A 115 SHEET 8 AA1 8 PHE A 155 PRO A 159 -1 O ARG A 158 N MET A 24 SHEET 1 AA2 8 VAL B 40 LEU B 41 0 SHEET 2 AA2 8 GLU B 89 THR B 93 -1 O ILE B 92 N VAL B 40 SHEET 3 AA2 8 THR B 75 TYR B 84 -1 N LYS B 82 O ARG B 91 SHEET 4 AA2 8 ALA B 62 ASP B 70 -1 N ALA B 62 O TYR B 83 SHEET 5 AA2 8 SER B 121 ALA B 128 1 O TYR B 123 N PHE B 69 SHEET 6 AA2 8 LEU B 108 HIS B 116 -1 N ALA B 114 O GLY B 122 SHEET 7 AA2 8 LEU B 19 VAL B 28 -1 N PHE B 25 O PHE B 111 SHEET 8 AA2 8 PHE B 155 PRO B 159 -1 O ARG B 158 N MET B 24 CISPEP 1 TYR A 87 PRO A 88 0 -0.60 CISPEP 2 ASP A 105 PRO A 106 0 4.10 CISPEP 3 TYR B 87 PRO B 88 0 -7.63 CISPEP 4 ASP B 105 PRO B 106 0 -0.11 CRYST1 40.775 94.583 123.403 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008104 0.00000