HEADER ISOMERASE 07-JUN-17 5O6P TITLE STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE D10N MUTANT IN COMPLEX WITH TITLE 2 GLUCOSE-1,6-BISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-PGM; COMPND 5 EC: 5.4.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_TAXID: 1358; SOURCE 4 STRAIN: IL1403; SOURCE 5 GENE: PGMB, LL0429, L0001; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHORYL TRANSFER, CATALYSIS, NEAR ATTACK COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.BOWLER REVDAT 4 17-JAN-24 5O6P 1 HETSYN REVDAT 3 29-JUL-20 5O6P 1 REMARK SITE REVDAT 2 19-SEP-18 5O6P 1 JRNL REVDAT 1 20-JUN-18 5O6P 0 JRNL AUTH L.A.JOHNSON,A.J.ROBERTSON,N.J.BAXTER,C.R.TREVITT,C.BISSON, JRNL AUTH 2 Y.JIN,H.P.WOOD,A.M.HOUNSLOW,M.J.CLIFF,G.M.BLACKBURN, JRNL AUTH 3 M.W.BOWLER,J.P.WALTHO JRNL TITL VAN DER WAALS CONTACT BETWEEN NUCLEOPHILE AND TRANSFERRING JRNL TITL 2 PHOSPHORUS IS INSUFFICIENT TO ACHIEVE ENZYME JRNL TITL 3 TRANSITION-STATE ARCHITECTURE JRNL REF ACS CATALYSIS 2018 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.8B01612 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 9024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 661 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1611 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.45000 REMARK 3 B22 (A**2) : 1.87000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.391 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1659 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2247 ; 2.224 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 207 ; 7.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;42.545 ;25.352 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 289 ;20.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.637 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 261 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1216 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 834 ; 0.687 ; 1.444 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1039 ; 1.134 ; 2.162 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 825 ; 0.775 ; 1.515 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2610 ; 3.775 ;20.617 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5909 -8.5230 11.6950 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.0980 REMARK 3 T33: 0.0342 T12: 0.0357 REMARK 3 T13: -0.0144 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 4.5809 L22: 3.3902 REMARK 3 L33: 4.6945 L12: -0.9688 REMARK 3 L13: -0.8983 L23: -0.5772 REMARK 3 S TENSOR REMARK 3 S11: 0.2265 S12: 0.4495 S13: -0.0257 REMARK 3 S21: -0.2331 S22: -0.0485 S23: 0.2388 REMARK 3 S31: -0.4652 S32: -0.0081 S33: -0.1780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5O6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : C001 REMARK 200 OPTICS : TOROIDLA MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31189 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2WF9 REMARK 200 REMARK 200 REMARK: SMALL NEEDLES WITH APPROXIMATE DIMENSIONS 0.03 MM X 0.05 REMARK 200 MM X 0.5 MM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28-32 % PEG 4000 AND 100 MM NA REMARK 280 ACETATE, PH 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.87500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.61500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.61500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.87500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 191 REMARK 465 GLU A 192 REMARK 465 ASP A 193 REMARK 465 LEU A 194 REMARK 465 GLY A 195 REMARK 465 ASP A 196 REMARK 465 ASP A 197 REMARK 465 GLN A 218 REMARK 465 LYS A 219 REMARK 465 GLN A 220 REMARK 465 LYS A 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 460 O HOH A 466 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 30 CD GLU A 30 OE2 0.077 REMARK 500 GLU A 124 CD GLU A 124 OE2 0.092 REMARK 500 GLU A 210 CD GLU A 210 OE1 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 6 CB - CG - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP A 15 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 -60.56 -99.58 REMARK 500 VAL A 12 -64.13 -128.28 REMARK 500 ASP A 61 50.84 37.25 REMARK 500 ALA A 66 -32.61 18.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASN A 10 O 80.3 REMARK 620 3 ASP A 170 OD1 72.2 81.8 REMARK 620 4 B16 A 301 O1X 102.6 95.9 174.6 REMARK 620 5 HOH A 433 O 93.0 172.6 93.2 88.6 REMARK 620 6 HOH A 444 O 150.4 92.2 78.4 106.7 92.2 REMARK 620 N 1 2 3 4 5 DBREF 5O6P A 1 221 UNP P71447 PGMB_LACLA 1 221 SEQADV 5O6P ASN A 10 UNP P71447 ASP 10 ENGINEERED MUTATION SEQADV 5O6P ARG A 125 UNP P71447 LYS 125 CONFLICT SEQADV 5O6P HIS A 206 UNP P71447 TYR 206 CONFLICT SEQRES 1 A 221 MET PHE LYS ALA VAL LEU PHE ASP LEU ASN GLY VAL ILE SEQRES 2 A 221 THR ASP THR ALA GLU TYR HIS PHE ARG ALA TRP LYS ALA SEQRES 3 A 221 LEU ALA GLU GLU ILE GLY ILE ASN GLY VAL ASP ARG GLN SEQRES 4 A 221 PHE ASN GLU GLN LEU LYS GLY VAL SER ARG GLU ASP SER SEQRES 5 A 221 LEU GLN LYS ILE LEU ASP LEU ALA ASP LYS LYS VAL SER SEQRES 6 A 221 ALA GLU GLU PHE LYS GLU LEU ALA LYS ARG LYS ASN ASP SEQRES 7 A 221 ASN TYR VAL LYS MET ILE GLN ASP VAL SER PRO ALA ASP SEQRES 8 A 221 VAL TYR PRO GLY ILE LEU GLN LEU LEU LYS ASP LEU ARG SEQRES 9 A 221 SER ASN LYS ILE LYS ILE ALA LEU ALA SER ALA SER LYS SEQRES 10 A 221 ASN GLY PRO PHE LEU LEU GLU ARG MET ASN LEU THR GLY SEQRES 11 A 221 TYR PHE ASP ALA ILE ALA ASP PRO ALA GLU VAL ALA ALA SEQRES 12 A 221 SER LYS PRO ALA PRO ASP ILE PHE ILE ALA ALA ALA HIS SEQRES 13 A 221 ALA VAL GLY VAL ALA PRO SER GLU SER ILE GLY LEU GLU SEQRES 14 A 221 ASP SER GLN ALA GLY ILE GLN ALA ILE LYS ASP SER GLY SEQRES 15 A 221 ALA LEU PRO ILE GLY VAL GLY ARG PRO GLU ASP LEU GLY SEQRES 16 A 221 ASP ASP ILE VAL ILE VAL PRO ASP THR SER HIS TYR THR SEQRES 17 A 221 LEU GLU PHE LEU LYS GLU VAL TRP LEU GLN LYS GLN LYS HET B16 A 301 20 HET MG A 302 1 HETNAM B16 1,6-DI-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN B16 1,6-DI-O-PHOSPHONO-BETA-D-GLUCOSE; 1,6-DI-O-PHOSPHONO- HETSYN 2 B16 D-GLUCOSE; 1,6-DI-O-PHOSPHONO-GLUCOSE FORMUL 2 B16 C6 H14 O12 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *70(H2 O) HELIX 1 AA1 THR A 16 ILE A 31 1 16 HELIX 2 AA2 ASP A 37 GLN A 43 1 7 HELIX 3 AA3 SER A 48 ASP A 61 1 14 HELIX 4 AA4 ALA A 66 ILE A 84 1 19 HELIX 5 AA5 SER A 88 VAL A 92 5 5 HELIX 6 AA6 GLY A 95 ASN A 106 1 12 HELIX 7 AA7 ASN A 118 MET A 126 1 9 HELIX 8 AA8 LEU A 128 PHE A 132 5 5 HELIX 9 AA9 PRO A 148 VAL A 158 1 11 HELIX 10 AB1 ALA A 161 SER A 163 5 3 HELIX 11 AB2 SER A 171 GLY A 182 1 12 HELIX 12 AB3 ASP A 203 TYR A 207 5 5 HELIX 13 AB4 THR A 208 LEU A 217 1 10 SHEET 1 AA1 6 ALA A 134 ILE A 135 0 SHEET 2 AA1 6 LYS A 109 LEU A 112 1 N LEU A 112 O ALA A 134 SHEET 3 AA1 6 ALA A 4 PHE A 7 1 N PHE A 7 O ALA A 111 SHEET 4 AA1 6 SER A 165 GLU A 169 1 O ILE A 166 N LEU A 6 SHEET 5 AA1 6 LEU A 184 VAL A 188 1 O LEU A 184 N GLY A 167 SHEET 6 AA1 6 VAL A 199 VAL A 201 1 O VAL A 199 N GLY A 187 LINK OD2 ASP A 8 MG MG A 302 1555 1555 2.07 LINK O ASN A 10 MG MG A 302 1555 1555 2.15 LINK OD1 ASP A 170 MG MG A 302 1555 1555 2.65 LINK O1X B16 A 301 MG MG A 302 1555 1555 1.97 LINK MG MG A 302 O HOH A 433 1555 1555 2.14 LINK MG MG A 302 O HOH A 444 1555 1555 2.11 CISPEP 1 LYS A 145 PRO A 146 0 6.30 CRYST1 31.750 68.300 83.230 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031496 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014641 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012015 0.00000