HEADER PROTEIN BINDING 07-JUN-17 5O6S TITLE UBV.B4R, A DIMERIC UBIQUITIN VARIANT BINDING TO BIRC4 RING COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYUBIQUITIN-B; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: VARIANT OF UBIQUITIN IDENTIFIED FROM PHAGE-DISPLAY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T.1 KEYWDS UBIQUITIN VARIANT, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.GABRIELSEN,L.BUETOW,D.T.HUANG REVDAT 2 17-JAN-24 5O6S 1 REMARK REVDAT 1 01-NOV-17 5O6S 0 JRNL AUTH M.GABRIELSEN,L.BUETOW,M.A.NAKASONE,S.F.AHMED,G.J.SIBBET, JRNL AUTH 2 B.O.SMITH,W.ZHANG,S.S.SIDHU,D.T.HUANG JRNL TITL A GENERAL STRATEGY FOR DISCOVERY OF INHIBITORS AND JRNL TITL 2 ACTIVATORS OF RING AND U-BOX E3 LIGASES WITH UBIQUITIN JRNL TITL 3 VARIANTS. JRNL REF MOL. CELL V. 68 456 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 29053960 JRNL DOI 10.1016/J.MOLCEL.2017.09.027 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 8936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.410 REMARK 3 FREE R VALUE TEST SET COUNT : 483 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2551 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2610 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2413 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.41 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.26560 REMARK 3 B22 (A**2) : 12.60670 REMARK 3 B33 (A**2) : -2.34110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 19.95010 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.540 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.551 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.833 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.785 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3619 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4871 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1359 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 120 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 487 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3619 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 505 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3860 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.78 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.74 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -22.2361 37.0449 -23.4807 REMARK 3 T TENSOR REMARK 3 T11: -0.0438 T22: -0.1218 REMARK 3 T33: -0.0161 T12: 0.0488 REMARK 3 T13: -0.1514 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 2.0017 L22: 1.5001 REMARK 3 L33: 4.0947 L12: 1.9994 REMARK 3 L13: 1.5657 L23: 3.4457 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: -0.1338 S13: -0.1836 REMARK 3 S21: 0.1703 S22: 0.1771 S23: -0.0125 REMARK 3 S31: 0.1767 S32: 0.2733 S33: -0.2172 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -44.5698 29.3498 -30.7247 REMARK 3 T TENSOR REMARK 3 T11: -0.0885 T22: -0.0791 REMARK 3 T33: -0.0022 T12: 0.0034 REMARK 3 T13: -0.0169 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: -0.1523 L22: 3.7812 REMARK 3 L33: 3.4516 L12: 1.8991 REMARK 3 L13: 0.7598 L23: 2.5941 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: 0.1182 S13: -0.2300 REMARK 3 S21: 0.4642 S22: -0.0073 S23: 0.1193 REMARK 3 S31: 0.0589 S32: -0.0714 S33: 0.0380 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -13.2274 28.2974 1.0739 REMARK 3 T TENSOR REMARK 3 T11: -0.2023 T22: 0.0460 REMARK 3 T33: -0.1582 T12: 0.0422 REMARK 3 T13: -0.0564 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 2.4971 L22: 5.2046 REMARK 3 L33: 1.1635 L12: 2.8368 REMARK 3 L13: 0.5950 L23: 1.2431 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: 0.0117 S13: 0.0843 REMARK 3 S21: 0.0299 S22: 0.1075 S23: -0.0549 REMARK 3 S31: -0.0224 S32: 0.0909 S33: -0.0573 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -32.4303 11.5373 6.8108 REMARK 3 T TENSOR REMARK 3 T11: -0.0413 T22: -0.1133 REMARK 3 T33: -0.2503 T12: 0.0161 REMARK 3 T13: -0.0427 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.7980 L22: 2.2540 REMARK 3 L33: 1.4836 L12: 0.6168 REMARK 3 L13: 0.3264 L23: 0.6402 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: -0.0338 S13: -0.0492 REMARK 3 S21: 0.3395 S22: -0.0920 S23: 0.1649 REMARK 3 S31: -0.0488 S32: -0.3663 S33: 0.1103 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { E|* } REMARK 3 ORIGIN FOR THE GROUP (A): 6.1281 45.5871 -20.7895 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: -0.2822 REMARK 3 T33: 0.0407 T12: 0.0293 REMARK 3 T13: -0.2281 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 2.3836 L22: 4.1016 REMARK 3 L33: 2.0632 L12: -1.6183 REMARK 3 L13: -0.3978 L23: 3.3551 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.2193 S13: 0.2570 REMARK 3 S21: -0.0045 S22: 0.0303 S23: 0.0144 REMARK 3 S31: -0.0354 S32: -0.2044 S33: -0.0255 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { F|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.0025 36.8391 -40.2495 REMARK 3 T TENSOR REMARK 3 T11: -0.0571 T22: -0.0939 REMARK 3 T33: -0.1706 T12: 0.0092 REMARK 3 T13: -0.1125 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 1.8395 L22: 3.4048 REMARK 3 L33: 5.6738 L12: 0.3207 REMARK 3 L13: -0.3017 L23: 3.7628 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.1283 S13: -0.0515 REMARK 3 S21: 0.0111 S22: 0.1073 S23: -0.4480 REMARK 3 S31: -0.0517 S32: 0.0263 S33: -0.1506 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8941 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 58.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.16900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (0.2 M ZINC ACETATE, 0.1 M PHOSPHATE REMARK 280 -CITRATE PH 4.2, 40 % PEG 300, PH 7.6, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 18.99366 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.83450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.79461 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 18.99366 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.83450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 58.79461 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 HIS A 74 REMARK 465 ARG A 75 REMARK 465 VAL A 76 REMARK 465 ALA A 77 REMARK 465 SER A 78 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 ARG B 75 REMARK 465 VAL B 76 REMARK 465 ALA B 77 REMARK 465 SER B 78 REMARK 465 GLY C -4 REMARK 465 SER C -3 REMARK 465 GLY C -2 REMARK 465 GLY C -1 REMARK 465 ARG C 75 REMARK 465 VAL C 76 REMARK 465 ALA C 77 REMARK 465 SER C 78 REMARK 465 GLY D -4 REMARK 465 SER D -3 REMARK 465 GLY D -2 REMARK 465 HIS D 74 REMARK 465 ARG D 75 REMARK 465 VAL D 76 REMARK 465 ALA D 77 REMARK 465 SER D 78 REMARK 465 GLY E -4 REMARK 465 SER E -3 REMARK 465 GLY E -2 REMARK 465 HIS E 74 REMARK 465 ARG E 75 REMARK 465 VAL E 76 REMARK 465 ALA E 77 REMARK 465 SER E 78 REMARK 465 GLY F -4 REMARK 465 SER F -3 REMARK 465 GLY F -2 REMARK 465 GLY F -1 REMARK 465 HIS F 74 REMARK 465 ARG F 75 REMARK 465 VAL F 76 REMARK 465 ALA F 77 REMARK 465 SER F 78 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 48 CG CD CE NZ REMARK 480 GLU B 34 CB CG CD OE1 OE2 REMARK 480 LYS B 63 CG CD CE NZ REMARK 480 GLU C 16 CG CD OE1 OE2 REMARK 480 LYS C 48 CG CD CE NZ REMARK 480 LYS C 64 CG CD CE NZ REMARK 480 GLN D 40 CG CD OE1 NE2 REMARK 480 LYS D 48 CD CE NZ REMARK 480 GLU D 51 CG CD OE1 OE2 REMARK 480 ARG D 54 CD NE CZ NH1 NH2 REMARK 480 ASN D 60 CG OD1 ND2 REMARK 480 LYS E 29 CG CD CE NZ REMARK 480 GLU E 34 CG CD OE1 OE2 REMARK 480 ASP E 39 CG OD1 OD2 REMARK 480 ARG E 54 C CG CD NE CZ NH1 NH2 REMARK 480 LYS E 64 CG CD CE NZ REMARK 480 LYS E 72 CG CD CE NZ REMARK 480 GLN F 31 CG CD OE1 NE2 REMARK 480 GLU F 34 CG CD OE1 OE2 REMARK 480 LYS F 48 CG CD CE NZ REMARK 480 ASN F 60 CB CG OD1 ND2 REMARK 480 LYS F 63 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 100.14 -172.14 REMARK 500 ASN A 62 -166.12 -125.79 REMARK 500 MET B 1 109.21 -160.31 REMARK 500 ASN B 62 -165.81 -126.15 REMARK 500 ASN C 62 -165.23 -126.91 REMARK 500 MET D 1 122.60 -30.07 REMARK 500 ASN D 62 -164.97 -126.97 REMARK 500 GLU E 34 -73.15 -140.80 REMARK 500 ASN E 62 -165.72 -126.58 REMARK 500 ARG F 54 135.99 162.79 REMARK 500 ASN F 62 -164.40 -126.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 5O6S A -4 78 PDB 5O6S 5O6S -4 78 DBREF 5O6S B -4 78 PDB 5O6S 5O6S -4 78 DBREF 5O6S C -4 78 PDB 5O6S 5O6S -4 78 DBREF 5O6S D -4 78 PDB 5O6S 5O6S -4 78 DBREF 5O6S E -4 78 PDB 5O6S 5O6S -4 78 DBREF 5O6S F -4 78 PDB 5O6S 5O6S -4 78 SEQRES 1 A 83 GLY SER GLY GLY SER MET GLN ILE LEU VAL THR THR ILE SEQRES 2 A 83 SER ALA GLU THR ILE ARG LEU GLU VAL GLU PRO SER ASP SEQRES 3 A 83 THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU SEQRES 4 A 83 GLY ILE PRO PRO ASP GLN GLN ARG LEU PHE PHE GLU GLY SEQRES 5 A 83 LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN SEQRES 6 A 83 ILE ASN LYS LYS SER THR LEU LEU LEU VAL VAL LYS PHE SEQRES 7 A 83 HIS ARG VAL ALA SER SEQRES 1 B 83 GLY SER GLY GLY SER MET GLN ILE LEU VAL THR THR ILE SEQRES 2 B 83 SER ALA GLU THR ILE ARG LEU GLU VAL GLU PRO SER ASP SEQRES 3 B 83 THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU SEQRES 4 B 83 GLY ILE PRO PRO ASP GLN GLN ARG LEU PHE PHE GLU GLY SEQRES 5 B 83 LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN SEQRES 6 B 83 ILE ASN LYS LYS SER THR LEU LEU LEU VAL VAL LYS PHE SEQRES 7 B 83 HIS ARG VAL ALA SER SEQRES 1 C 83 GLY SER GLY GLY SER MET GLN ILE LEU VAL THR THR ILE SEQRES 2 C 83 SER ALA GLU THR ILE ARG LEU GLU VAL GLU PRO SER ASP SEQRES 3 C 83 THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU SEQRES 4 C 83 GLY ILE PRO PRO ASP GLN GLN ARG LEU PHE PHE GLU GLY SEQRES 5 C 83 LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN SEQRES 6 C 83 ILE ASN LYS LYS SER THR LEU LEU LEU VAL VAL LYS PHE SEQRES 7 C 83 HIS ARG VAL ALA SER SEQRES 1 D 83 GLY SER GLY GLY SER MET GLN ILE LEU VAL THR THR ILE SEQRES 2 D 83 SER ALA GLU THR ILE ARG LEU GLU VAL GLU PRO SER ASP SEQRES 3 D 83 THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU SEQRES 4 D 83 GLY ILE PRO PRO ASP GLN GLN ARG LEU PHE PHE GLU GLY SEQRES 5 D 83 LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN SEQRES 6 D 83 ILE ASN LYS LYS SER THR LEU LEU LEU VAL VAL LYS PHE SEQRES 7 D 83 HIS ARG VAL ALA SER SEQRES 1 E 83 GLY SER GLY GLY SER MET GLN ILE LEU VAL THR THR ILE SEQRES 2 E 83 SER ALA GLU THR ILE ARG LEU GLU VAL GLU PRO SER ASP SEQRES 3 E 83 THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU SEQRES 4 E 83 GLY ILE PRO PRO ASP GLN GLN ARG LEU PHE PHE GLU GLY SEQRES 5 E 83 LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN SEQRES 6 E 83 ILE ASN LYS LYS SER THR LEU LEU LEU VAL VAL LYS PHE SEQRES 7 E 83 HIS ARG VAL ALA SER SEQRES 1 F 83 GLY SER GLY GLY SER MET GLN ILE LEU VAL THR THR ILE SEQRES 2 F 83 SER ALA GLU THR ILE ARG LEU GLU VAL GLU PRO SER ASP SEQRES 3 F 83 THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU SEQRES 4 F 83 GLY ILE PRO PRO ASP GLN GLN ARG LEU PHE PHE GLU GLY SEQRES 5 F 83 LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN SEQRES 6 F 83 ILE ASN LYS LYS SER THR LEU LEU LEU VAL VAL LYS PHE SEQRES 7 F 83 HIS ARG VAL ALA SER FORMUL 7 HOH *31(H2 O) HELIX 1 AA1 THR A 22 GLU A 34 1 13 HELIX 2 AA2 PRO A 37 GLN A 41 5 5 HELIX 3 AA3 THR B 22 GLU B 34 1 13 HELIX 4 AA4 PRO B 37 GLN B 41 5 5 HELIX 5 AA5 THR C 22 GLU C 34 1 13 HELIX 6 AA6 PRO C 37 GLN C 41 5 5 HELIX 7 AA7 THR D 22 GLU D 34 1 13 HELIX 8 AA8 THR E 22 GLU E 34 1 13 HELIX 9 AA9 PRO E 37 GLN E 41 5 5 HELIX 10 AB1 THR F 22 GLU F 34 1 13 SHEET 1 AA1 8 LYS A 48 GLN A 49 0 SHEET 2 AA1 8 ARG A 42 PHE A 45 -1 N PHE A 45 O LYS A 48 SHEET 3 AA1 8 THR A 66 VAL A 71 -1 O LEU A 68 N PHE A 44 SHEET 4 AA1 8 GLN B 2 GLU B 16 1 O THR B 6 N LEU A 67 SHEET 5 AA1 8 GLN A 2 GLU A 16 -1 N ILE A 3 O LEU B 15 SHEET 6 AA1 8 THR B 66 VAL B 70 1 O LEU B 67 N LEU A 4 SHEET 7 AA1 8 ARG B 42 PHE B 45 -1 N PHE B 44 O LEU B 68 SHEET 8 AA1 8 LYS B 48 LEU B 50 -1 O LEU B 50 N LEU B 43 SHEET 1 AA2 8 LYS C 48 LEU C 50 0 SHEET 2 AA2 8 ARG C 42 PHE C 45 -1 N LEU C 43 O LEU C 50 SHEET 3 AA2 8 THR C 66 VAL C 71 -1 O LEU C 68 N PHE C 44 SHEET 4 AA2 8 GLN D 2 VAL D 17 1 O THR D 6 N LEU C 67 SHEET 5 AA2 8 MET C 1 GLU C 16 -1 N MET C 1 O VAL D 17 SHEET 6 AA2 8 THR D 66 VAL D 71 1 O LEU D 67 N THR C 6 SHEET 7 AA2 8 ARG D 42 PHE D 45 -1 N PHE D 44 O LEU D 68 SHEET 8 AA2 8 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 SHEET 1 AA3 8 LYS E 48 LEU E 50 0 SHEET 2 AA3 8 ARG E 42 PHE E 45 -1 N LEU E 43 O LEU E 50 SHEET 3 AA3 8 THR E 66 VAL E 71 -1 O LEU E 68 N PHE E 44 SHEET 4 AA3 8 MET F 1 VAL F 17 1 O ILE F 8 N LEU E 69 SHEET 5 AA3 8 MET E 1 VAL E 17 -1 N VAL E 17 O MET F 1 SHEET 6 AA3 8 THR F 66 VAL F 71 1 O LEU F 67 N THR E 6 SHEET 7 AA3 8 ARG F 42 PHE F 45 -1 N PHE F 44 O LEU F 68 SHEET 8 AA3 8 LYS F 48 LEU F 50 -1 O LEU F 50 N LEU F 43 CRYST1 48.213 71.669 118.033 90.00 94.97 90.00 I 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020741 0.000000 0.001804 0.00000 SCALE2 0.000000 0.013953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008504 0.00000