HEADER HYDROLASE 07-JUN-17 5O71 TITLE CRYSTAL STRUCTURE OF HUMAN USP25 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 25; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEUBIQUITINATING ENZYME 25,USP ON CHROMOSOME 21,UBIQUITIN COMPND 5 THIOESTERASE 25,UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 25; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP25, USP21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, DE-UBIQUINATING ENZYME, USP FAMILY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.REVERTER,B.LIU REVDAT 3 08-MAY-24 5O71 1 REMARK REVDAT 2 17-APR-19 5O71 1 JRNL REVDAT 1 20-JUN-18 5O71 0 JRNL AUTH B.LIU,M.SUREDA-GOMEZ,Y.ZHEN,V.AMADOR,D.REVERTER JRNL TITL A QUATERNARY TETRAMER ASSEMBLY INHIBITS THE DEUBIQUITINATING JRNL TITL 2 ACTIVITY OF USP25. JRNL REF NAT COMMUN V. 9 4973 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30478318 JRNL DOI 10.1038/S41467-018-07510-5 REMARK 2 REMARK 2 RESOLUTION. 3.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 14150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 722 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1015 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3963 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 146.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.85000 REMARK 3 B22 (A**2) : 4.85000 REMARK 3 B33 (A**2) : -9.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.487 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.433 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.260 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4060 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3722 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5477 ; 1.524 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8639 ; 1.023 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 8.302 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;35.694 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;20.002 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;14.271 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 571 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4455 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 876 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1890 ;10.533 ;14.488 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1889 ;10.514 ;14.486 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2352 ;15.950 ;21.705 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2353 ;15.947 ;21.708 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2170 ;10.407 ;15.291 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2171 ;10.406 ;15.293 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3126 ;16.102 ;22.600 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4723 ;21.044 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4724 ;21.047 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14883 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.283 REMARK 200 RESOLUTION RANGE LOW (A) : 95.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.98400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM FLUORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 70.40300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 70.40300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.07800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 70.40300 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 70.40300 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 95.07800 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 70.40300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 70.40300 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 95.07800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 70.40300 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 70.40300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 95.07800 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 70.40300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.40300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 95.07800 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 70.40300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 70.40300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 95.07800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 70.40300 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 70.40300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 95.07800 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 70.40300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 70.40300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 95.07800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 95210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 140.80600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -70.40300 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 70.40300 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -95.07800 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 70.40300 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 70.40300 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -95.07800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 GLU A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 VAL A 7 REMARK 465 LEU A 8 REMARK 465 GLN A 9 REMARK 465 GLN A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 GLN A 14 REMARK 465 LYS A 15 REMARK 465 HIS A 16 REMARK 465 GLN A 17 REMARK 465 GLN A 18 REMARK 465 THR A 19 REMARK 465 PHE A 20 REMARK 465 LEU A 21 REMARK 465 ASN A 22 REMARK 465 GLN A 23 REMARK 465 LEU A 24 REMARK 465 ARG A 25 REMARK 465 GLU A 26 REMARK 465 ILE A 27 REMARK 465 THR A 28 REMARK 465 GLY A 29 REMARK 465 ILE A 30 REMARK 465 ASN A 31 REMARK 465 ASP A 32 REMARK 465 THR A 33 REMARK 465 GLN A 34 REMARK 465 ILE A 35 REMARK 465 LEU A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 ALA A 39 REMARK 465 LEU A 40 REMARK 465 LYS A 41 REMARK 465 ASP A 42 REMARK 465 SER A 43 REMARK 465 ASN A 44 REMARK 465 GLY A 45 REMARK 465 ASN A 46 REMARK 465 LEU A 47 REMARK 465 GLU A 48 REMARK 465 LEU A 49 REMARK 465 ALA A 50 REMARK 465 VAL A 51 REMARK 465 ALA A 52 REMARK 465 PHE A 53 REMARK 465 LEU A 54 REMARK 465 THR A 55 REMARK 465 ALA A 56 REMARK 465 LYS A 57 REMARK 465 ASN A 58 REMARK 465 ALA A 59 REMARK 465 LYS A 60 REMARK 465 THR A 61 REMARK 465 PRO A 62 REMARK 465 GLN A 63 REMARK 465 GLN A 64 REMARK 465 GLU A 65 REMARK 465 GLU A 66 REMARK 465 THR A 67 REMARK 465 THR A 68 REMARK 465 TYR A 69 REMARK 465 TYR A 70 REMARK 465 GLN A 71 REMARK 465 THR A 72 REMARK 465 ALA A 73 REMARK 465 LEU A 74 REMARK 465 PRO A 75 REMARK 465 GLY A 76 REMARK 465 ASN A 77 REMARK 465 ASP A 78 REMARK 465 ARG A 79 REMARK 465 TYR A 80 REMARK 465 ILE A 81 REMARK 465 SER A 82 REMARK 465 VAL A 83 REMARK 465 GLY A 84 REMARK 465 SER A 85 REMARK 465 GLN A 86 REMARK 465 ALA A 87 REMARK 465 ASP A 88 REMARK 465 THR A 89 REMARK 465 ASN A 90 REMARK 465 VAL A 91 REMARK 465 ILE A 92 REMARK 465 ASP A 93 REMARK 465 LEU A 94 REMARK 465 THR A 95 REMARK 465 GLY A 96 REMARK 465 ASP A 97 REMARK 465 ASP A 98 REMARK 465 LYS A 99 REMARK 465 ASP A 100 REMARK 465 ASP A 101 REMARK 465 LEU A 102 REMARK 465 GLN A 103 REMARK 465 ARG A 104 REMARK 465 ALA A 105 REMARK 465 ILE A 106 REMARK 465 ALA A 107 REMARK 465 LEU A 108 REMARK 465 SER A 109 REMARK 465 LEU A 110 REMARK 465 ALA A 111 REMARK 465 GLU A 112 REMARK 465 SER A 113 REMARK 465 ASN A 114 REMARK 465 ARG A 115 REMARK 465 ALA A 116 REMARK 465 PHE A 117 REMARK 465 ARG A 118 REMARK 465 GLU A 119 REMARK 465 THR A 120 REMARK 465 GLY A 121 REMARK 465 ILE A 122 REMARK 465 THR A 123 REMARK 465 ASP A 124 REMARK 465 GLU A 125 REMARK 465 GLU A 126 REMARK 465 GLN A 127 REMARK 465 ALA A 128 REMARK 465 ILE A 129 REMARK 465 SER A 130 REMARK 465 ARG A 131 REMARK 465 VAL A 132 REMARK 465 LEU A 133 REMARK 465 GLU A 134 REMARK 465 ALA A 135 REMARK 465 SER A 136 REMARK 465 ILE A 137 REMARK 465 ALA A 138 REMARK 465 GLU A 139 REMARK 465 ASN A 140 REMARK 465 LYS A 141 REMARK 465 ALA A 142 REMARK 465 CYS A 143 REMARK 465 LEU A 144 REMARK 465 LYS A 145 REMARK 465 ARG A 146 REMARK 465 THR A 147 REMARK 465 PRO A 148 REMARK 465 THR A 149 REMARK 465 GLU A 150 REMARK 465 VAL A 151 REMARK 465 TRP A 152 REMARK 465 ARG A 153 REMARK 465 ASP A 154 REMARK 465 SER A 155 REMARK 465 ARG A 156 REMARK 465 ASN A 157 REMARK 465 PRO A 158 REMARK 465 ASN A 205 REMARK 465 ALA A 206 REMARK 465 GLN A 207 REMARK 465 ASP A 208 REMARK 465 LEU A 209 REMARK 465 PRO A 210 REMARK 465 ARG A 211 REMARK 465 ASN A 212 REMARK 465 GLN A 213 REMARK 465 LYS A 214 REMARK 465 ASN A 256 REMARK 465 ASP A 257 REMARK 465 SER A 258 REMARK 465 GLN A 259 REMARK 465 GLN A 260 REMARK 465 ILE A 346 REMARK 465 GLU A 347 REMARK 465 SER A 348 REMARK 465 LEU A 349 REMARK 465 HIS A 350 REMARK 465 SER A 351 REMARK 465 GLU A 352 REMARK 465 ASN A 353 REMARK 465 SER A 354 REMARK 465 ASP A 471 REMARK 465 ILE A 472 REMARK 465 ASP A 473 REMARK 465 ALA A 474 REMARK 465 SER A 475 REMARK 465 SER A 476 REMARK 465 PRO A 477 REMARK 465 PRO A 478 REMARK 465 SER A 479 REMARK 465 GLY A 480 REMARK 465 SER A 481 REMARK 465 ILE A 482 REMARK 465 PRO A 483 REMARK 465 SER A 484 REMARK 465 GLN A 485 REMARK 465 THR A 486 REMARK 465 LEU A 487 REMARK 465 PRO A 488 REMARK 465 SER A 489 REMARK 465 THR A 490 REMARK 465 THR A 491 REMARK 465 GLU A 492 REMARK 465 GLN A 493 REMARK 465 GLN A 494 REMARK 465 GLY A 495 REMARK 465 ALA A 496 REMARK 465 LEU A 497 REMARK 465 SER A 498 REMARK 465 SER A 499 REMARK 465 GLU A 500 REMARK 465 LEU A 501 REMARK 465 PRO A 502 REMARK 465 SER A 503 REMARK 465 THR A 504 REMARK 465 SER A 505 REMARK 465 PRO A 506 REMARK 465 SER A 507 REMARK 465 SER A 508 REMARK 465 VAL A 509 REMARK 465 ALA A 510 REMARK 465 ALA A 511 REMARK 465 ILE A 512 REMARK 465 SER A 513 REMARK 465 SER A 514 REMARK 465 ARG A 515 REMARK 465 THR A 671 REMARK 465 GLY A 672 REMARK 465 GLN A 673 REMARK 465 PRO A 674 REMARK 465 LEU A 675 REMARK 465 VAL A 676 REMARK 465 GLY A 677 REMARK 465 GLN A 709 REMARK 465 LYS A 710 REMARK 465 ALA A 711 REMARK 465 LEU A 712 REMARK 465 GLN A 713 REMARK 465 GLU A 714 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 403 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 163 170.77 -55.19 REMARK 500 ALA A 167 -168.93 -74.25 REMARK 500 TRP A 179 -35.27 -38.66 REMARK 500 ASN A 199 34.90 -89.66 REMARK 500 PRO A 202 107.31 -59.11 REMARK 500 GLU A 247 -38.59 -36.38 REMARK 500 ALA A 252 -9.53 -51.02 REMARK 500 PHE A 253 56.49 -113.53 REMARK 500 LYS A 292 119.41 -175.52 REMARK 500 VAL A 306 89.53 -69.50 REMARK 500 ARG A 526 14.85 53.55 REMARK 500 ASP A 530 38.47 -91.02 REMARK 500 MET A 533 -176.74 -172.08 REMARK 500 HIS A 534 -127.58 51.21 REMARK 500 ILE A 540 130.40 -171.84 REMARK 500 ASP A 583 -177.25 -172.52 REMARK 500 SER A 585 -34.55 88.65 REMARK 500 HIS A 615 -66.05 81.09 REMARK 500 ASP A 625 -118.48 46.93 REMARK 500 TYR A 644 -71.00 -59.60 REMARK 500 PHE A 667 100.85 -31.26 REMARK 500 GLU A 679 45.83 -79.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 5O71 A 1 714 UNP Q9UHP3 UBP25_HUMAN 1 714 SEQADV 5O71 GLY A -1 UNP Q9UHP3 EXPRESSION TAG SEQADV 5O71 SER A 0 UNP Q9UHP3 EXPRESSION TAG SEQRES 1 A 716 GLY SER MET THR VAL GLU GLN ASN VAL LEU GLN GLN SER SEQRES 2 A 716 ALA ALA GLN LYS HIS GLN GLN THR PHE LEU ASN GLN LEU SEQRES 3 A 716 ARG GLU ILE THR GLY ILE ASN ASP THR GLN ILE LEU GLN SEQRES 4 A 716 GLN ALA LEU LYS ASP SER ASN GLY ASN LEU GLU LEU ALA SEQRES 5 A 716 VAL ALA PHE LEU THR ALA LYS ASN ALA LYS THR PRO GLN SEQRES 6 A 716 GLN GLU GLU THR THR TYR TYR GLN THR ALA LEU PRO GLY SEQRES 7 A 716 ASN ASP ARG TYR ILE SER VAL GLY SER GLN ALA ASP THR SEQRES 8 A 716 ASN VAL ILE ASP LEU THR GLY ASP ASP LYS ASP ASP LEU SEQRES 9 A 716 GLN ARG ALA ILE ALA LEU SER LEU ALA GLU SER ASN ARG SEQRES 10 A 716 ALA PHE ARG GLU THR GLY ILE THR ASP GLU GLU GLN ALA SEQRES 11 A 716 ILE SER ARG VAL LEU GLU ALA SER ILE ALA GLU ASN LYS SEQRES 12 A 716 ALA CYS LEU LYS ARG THR PRO THR GLU VAL TRP ARG ASP SEQRES 13 A 716 SER ARG ASN PRO TYR ASP ARG LYS ARG GLN ASP LYS ALA SEQRES 14 A 716 PRO VAL GLY LEU LYS ASN VAL GLY ASN THR CYS TRP PHE SEQRES 15 A 716 SER ALA VAL ILE GLN SER LEU PHE ASN LEU LEU GLU PHE SEQRES 16 A 716 ARG ARG LEU VAL LEU ASN TYR LYS PRO PRO SER ASN ALA SEQRES 17 A 716 GLN ASP LEU PRO ARG ASN GLN LYS GLU HIS ARG ASN LEU SEQRES 18 A 716 PRO PHE MET ARG GLU LEU ARG TYR LEU PHE ALA LEU LEU SEQRES 19 A 716 VAL GLY THR LYS ARG LYS TYR VAL ASP PRO SER ARG ALA SEQRES 20 A 716 VAL GLU ILE LEU LYS ASP ALA PHE LYS SER ASN ASP SER SEQRES 21 A 716 GLN GLN GLN ASP VAL SER GLU PHE THR HIS LYS LEU LEU SEQRES 22 A 716 ASP TRP LEU GLU ASP ALA PHE GLN MET LYS ALA GLU GLU SEQRES 23 A 716 GLU THR ASP GLU GLU LYS PRO LYS ASN PRO MET VAL GLU SEQRES 24 A 716 LEU PHE TYR GLY ARG PHE LEU ALA VAL GLY VAL LEU GLU SEQRES 25 A 716 GLY LYS LYS PHE GLU ASN THR GLU MET PHE GLY GLN TYR SEQRES 26 A 716 PRO LEU GLN VAL ASN GLY PHE LYS ASP LEU HIS GLU CYS SEQRES 27 A 716 LEU GLU ALA ALA MET ILE GLU GLY GLU ILE GLU SER LEU SEQRES 28 A 716 HIS SER GLU ASN SER GLY LYS SER GLY GLN GLU HIS TRP SEQRES 29 A 716 PHE THR GLU LEU PRO PRO VAL LEU THR PHE GLU LEU SER SEQRES 30 A 716 ARG PHE GLU PHE ASN GLN ALA LEU GLY ARG PRO GLU LYS SEQRES 31 A 716 ILE HIS ASN LYS LEU GLU PHE PRO GLN VAL LEU TYR LEU SEQRES 32 A 716 ASP ARG TYR MET HIS ARG ASN ARG GLU ILE THR ARG ILE SEQRES 33 A 716 LYS ARG GLU GLU ILE LYS ARG LEU LYS ASP TYR LEU THR SEQRES 34 A 716 VAL LEU GLN GLN ARG LEU GLU ARG TYR LEU SER TYR GLY SEQRES 35 A 716 SER GLY PRO LYS ARG PHE PRO LEU VAL ASP VAL LEU GLN SEQRES 36 A 716 TYR ALA LEU GLU PHE ALA SER SER LYS PRO VAL CYS THR SEQRES 37 A 716 SER PRO VAL ASP ASP ILE ASP ALA SER SER PRO PRO SER SEQRES 38 A 716 GLY SER ILE PRO SER GLN THR LEU PRO SER THR THR GLU SEQRES 39 A 716 GLN GLN GLY ALA LEU SER SER GLU LEU PRO SER THR SER SEQRES 40 A 716 PRO SER SER VAL ALA ALA ILE SER SER ARG SER VAL ILE SEQRES 41 A 716 HIS LYS PRO PHE THR GLN SER ARG ILE PRO PRO ASP LEU SEQRES 42 A 716 PRO MET HIS PRO ALA PRO ARG HIS ILE THR GLU GLU GLU SEQRES 43 A 716 LEU SER VAL LEU GLU SER CYS LEU HIS ARG TRP ARG THR SEQRES 44 A 716 GLU ILE GLU ASN ASP THR ARG ASP LEU GLN GLU SER ILE SEQRES 45 A 716 SER ARG ILE HIS ARG THR ILE GLU LEU MET TYR SER ASP SEQRES 46 A 716 LYS SER MET ILE GLN VAL PRO TYR ARG LEU HIS ALA VAL SEQRES 47 A 716 LEU VAL HIS GLU GLY GLN ALA ASN ALA GLY HIS TYR TRP SEQRES 48 A 716 ALA TYR ILE PHE ASP HIS ARG GLU SER ARG TRP MET LYS SEQRES 49 A 716 TYR ASN ASP ILE ALA VAL THR LYS SER SER TRP GLU GLU SEQRES 50 A 716 LEU VAL ARG ASP SER PHE GLY GLY TYR ARG ASN ALA SER SEQRES 51 A 716 ALA TYR CYS LEU MET TYR ILE ASN ASP LYS ALA GLN PHE SEQRES 52 A 716 LEU ILE GLN GLU GLU PHE ASN LYS GLU THR GLY GLN PRO SEQRES 53 A 716 LEU VAL GLY ILE GLU THR LEU PRO PRO ASP LEU ARG ASP SEQRES 54 A 716 PHE VAL GLU GLU ASP ASN GLN ARG PHE GLU LYS GLU LEU SEQRES 55 A 716 GLU GLU TRP ASP ALA GLN LEU ALA GLN LYS ALA LEU GLN SEQRES 56 A 716 GLU HELIX 1 AA1 CYS A 178 LEU A 190 1 13 HELIX 2 AA2 LEU A 190 ASN A 199 1 10 HELIX 3 AA3 ARG A 217 THR A 235 1 19 HELIX 4 AA4 PRO A 242 ALA A 252 1 11 HELIX 5 AA5 GLU A 265 ALA A 282 1 18 HELIX 6 AA6 GLU A 283 THR A 286 5 4 HELIX 7 AA7 ASN A 293 TYR A 300 1 8 HELIX 8 AA8 ASP A 332 ALA A 339 1 8 HELIX 9 AA9 ASP A 402 ARG A 407 5 6 HELIX 10 AB1 ASN A 408 SER A 438 1 31 HELIX 11 AB2 PRO A 447 SER A 460 1 14 HELIX 12 AB3 THR A 541 MET A 580 1 40 HELIX 13 AB4 SER A 632 PHE A 641 1 10 HELIX 14 AB5 ALA A 659 GLU A 665 1 7 HELIX 15 AB6 PRO A 682 ALA A 705 1 24 SHEET 1 AA1 2 GLY A 170 LEU A 171 0 SHEET 2 AA1 2 TYR A 239 VAL A 240 1 O VAL A 240 N GLY A 170 SHEET 1 AA2 4 PHE A 314 PHE A 320 0 SHEET 2 AA2 4 GLY A 301 GLY A 307 -1 N PHE A 303 O GLU A 318 SHEET 3 AA2 4 GLY A 358 GLU A 365 -1 O TRP A 362 N LEU A 304 SHEET 4 AA2 4 ILE A 342 GLY A 344 -1 N GLU A 343 O GLN A 359 SHEET 1 AA3 5 TYR A 323 GLN A 326 0 SHEET 2 AA3 5 VAL A 369 SER A 375 1 O SER A 375 N LEU A 325 SHEET 3 AA3 5 SER A 648 ASN A 656 -1 O LEU A 652 N PHE A 372 SHEET 4 AA3 5 PRO A 590 GLY A 601 -1 N LEU A 597 O CYS A 651 SHEET 5 AA3 5 VAL A 398 TYR A 400 -1 N LEU A 399 O TYR A 591 SHEET 1 AA4 7 TYR A 323 GLN A 326 0 SHEET 2 AA4 7 VAL A 369 SER A 375 1 O SER A 375 N LEU A 325 SHEET 3 AA4 7 SER A 648 ASN A 656 -1 O LEU A 652 N PHE A 372 SHEET 4 AA4 7 PRO A 590 GLY A 601 -1 N LEU A 597 O CYS A 651 SHEET 5 AA4 7 GLY A 606 PHE A 613 -1 O TRP A 609 N VAL A 598 SHEET 6 AA4 7 TRP A 620 ASN A 624 -1 O MET A 621 N ILE A 612 SHEET 7 AA4 7 ALA A 627 LYS A 630 -1 O THR A 629 N LYS A 622 SHEET 1 AA5 2 PHE A 377 PHE A 379 0 SHEET 2 AA5 2 PRO A 386 LYS A 388 -1 O GLU A 387 N GLU A 378 CRYST1 140.806 140.806 190.156 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007102 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005259 0.00000