HEADER SIGNALING PROTEIN 09-JUN-17 5O7J TITLE STRUCTURAL INSIGHTS INTO THE PERIPLASMIC SENSOR DOMAIN OF THE GACS TITLE 2 HISTIDINE KINASE CONTROLLING BIOFILM FORMATION IN PSEUDOMONAS TITLE 3 AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PERIPLASMIC DETECTION DOMAIN, UNP RESIDUES 54-180; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: GACS, PAMH19_4268; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PERIPLASMIC DETECTION DOMAIN, HISTIDINE-KINASE, GACS, BIOFILM, KEYWDS 2 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ALI-AHMAD,O.BORNET,F.FADEL,Y.BOURNE,F.VINCENT,F.GUERLESQUIN, AUTHOR 2 C.SEBBAN-KREUZER REVDAT 3 19-JUN-24 5O7J 1 REMARK REVDAT 2 08-MAY-19 5O7J 1 REMARK REVDAT 1 07-FEB-18 5O7J 0 JRNL AUTH A.ALI-AHMAD,F.FADEL,C.SEBBAN-KREUZER,M.BA,G.D.PELISSIER, JRNL AUTH 2 O.BORNET,F.GUERLESQUIN,Y.BOURNE,C.BORDI,F.VINCENT JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE PERIPLASMIC JRNL TITL 2 DETECTOR DOMAIN OF THE GACS HISTIDINE KINASE CONTROLLING JRNL TITL 3 BIOFILM FORMATION IN PSEUDOMONAS AERUGINOSA. JRNL REF SCI REP V. 7 11262 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28900144 JRNL DOI 10.1038/S41598-017-11361-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005313. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 15N] GACS REMARK 210 PERIPLASMIC DETECTION DOMAIN, REMARK 210 150 MM SODIUM CHLORIDE, 50 MM REMARK 210 SODIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O; 0.8 MM [U-99% 13C; U-99% REMARK 210 15N] GACS PERIPLASMIC DETECTION REMARK 210 DOMAIN, 50 MM SODIUM PHOSPHATE, REMARK 210 150 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D HNHA; 2D 1H-13C HSQC; 3D HNCO; REMARK 210 3D HCACO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY; 3D REMARK 210 1H-13C NOESY AROMATIC; 2D CBCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.0, CARA, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 11 ARG A 132 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 15 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 15 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 17 -163.26 63.60 REMARK 500 1 HIS A 21 -166.57 72.06 REMARK 500 1 HIS A 22 76.23 60.56 REMARK 500 1 SER A 23 -50.85 -160.14 REMARK 500 1 SER A 24 -66.68 65.67 REMARK 500 1 LEU A 28 -9.06 -156.88 REMARK 500 1 THR A 30 13.32 -142.88 REMARK 500 1 GLN A 36 -171.94 69.83 REMARK 500 1 ALA A 50 -106.38 -154.51 REMARK 500 1 LEU A 53 -37.46 -135.79 REMARK 500 1 ALA A 84 140.84 -177.85 REMARK 500 1 HIS A 97 136.30 -173.28 REMARK 500 1 VAL A 105 40.80 -97.17 REMARK 500 1 ALA A 108 -161.53 65.69 REMARK 500 1 ALA A 111 -87.38 -81.25 REMARK 500 1 SER A 115 89.45 -67.22 REMARK 500 1 SER A 117 82.19 -175.86 REMARK 500 1 THR A 118 44.65 -143.95 REMARK 500 1 PHE A 125 -136.74 49.94 REMARK 500 1 ARG A 146 -51.23 -175.74 REMARK 500 1 HIS A 157 3.16 -68.96 REMARK 500 1 HIS A 158 -173.89 70.77 REMARK 500 1 THR A 160 -179.37 74.69 REMARK 500 2 HIS A 18 -144.88 62.99 REMARK 500 2 HIS A 22 117.41 -160.45 REMARK 500 2 SER A 23 43.11 -167.68 REMARK 500 2 VAL A 26 -88.76 -142.52 REMARK 500 2 ASP A 27 -72.33 -164.56 REMARK 500 2 THR A 30 20.12 -148.01 REMARK 500 2 GLN A 36 -154.93 64.36 REMARK 500 2 ALA A 50 -88.47 -139.42 REMARK 500 2 GLU A 51 94.01 -178.59 REMARK 500 2 LEU A 53 -43.58 -131.49 REMARK 500 2 ALA A 84 146.52 -176.79 REMARK 500 2 HIS A 97 139.71 -173.57 REMARK 500 2 SER A 115 30.49 -79.38 REMARK 500 2 SER A 117 101.07 -173.43 REMARK 500 2 GLU A 119 176.20 73.20 REMARK 500 2 THR A 122 40.29 -79.04 REMARK 500 2 ARG A 146 -55.40 -178.97 REMARK 500 2 LEU A 153 80.64 -153.82 REMARK 500 2 HIS A 158 169.23 78.09 REMARK 500 2 ARG A 163 35.10 -153.42 REMARK 500 3 HIS A 17 52.16 -157.24 REMARK 500 3 HIS A 20 -56.14 -135.51 REMARK 500 3 THR A 30 20.64 -150.94 REMARK 500 3 PHE A 35 34.25 -142.34 REMARK 500 3 GLN A 36 -152.08 60.56 REMARK 500 3 ALA A 50 -115.44 -153.03 REMARK 500 3 GLN A 52 28.02 43.33 REMARK 500 REMARK 500 THIS ENTRY HAS 427 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 94 0.08 SIDE CHAIN REMARK 500 9 ARG A 94 0.08 SIDE CHAIN REMARK 500 11 ARG A 163 0.09 SIDE CHAIN REMARK 500 18 ARG A 45 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26840 RELATED DB: BMRB DBREF1 5O7J A 38 164 UNP A0A0A8RMX6_PSEAI DBREF2 5O7J A A0A0A8RMX6 54 180 SEQADV 5O7J MET A 15 UNP A0A0A8RMX INITIATING METHIONINE SEQADV 5O7J GLY A 16 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J HIS A 17 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J HIS A 18 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J HIS A 19 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J HIS A 20 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J HIS A 21 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J HIS A 22 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J SER A 23 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J SER A 24 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J GLY A 25 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J VAL A 26 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J ASP A 27 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J LEU A 28 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J GLY A 29 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J THR A 30 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J GLU A 31 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J ASN A 32 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J LEU A 33 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J TYR A 34 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J PHE A 35 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J GLN A 36 UNP A0A0A8RMX EXPRESSION TAG SEQADV 5O7J SER A 37 UNP A0A0A8RMX EXPRESSION TAG SEQRES 1 A 150 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP SEQRES 2 A 150 LEU GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG ALA SEQRES 3 A 150 GLN LEU ILE GLU ARG GLY GLN LEU ILE ALA GLU GLN LEU SEQRES 4 A 150 ALA PRO LEU ALA ALA THR ALA LEU ALA ARG LYS ASP THR SEQRES 5 A 150 ALA VAL LEU ASN ARG ILE ALA ASN GLU ALA LEU ASP GLN SEQRES 6 A 150 PRO ASP VAL ARG ALA VAL THR PHE LEU ASP ALA ARG GLN SEQRES 7 A 150 GLU ARG LEU ALA HIS ALA GLY PRO SER MET LEU THR VAL SEQRES 8 A 150 ALA PRO ALA GLY ASP ALA SER HIS LEU SER MET SER THR SEQRES 9 A 150 GLU LEU ASP THR THR HIS PHE LEU LEU PRO VAL LEU GLY SEQRES 10 A 150 ARG HIS HIS SER LEU SER GLY ALA THR GLU PRO ASP ASP SEQRES 11 A 150 GLU ARG VAL LEU GLY TRP VAL GLU LEU GLU LEU SER HIS SEQRES 12 A 150 HIS GLY THR LEU LEU ARG GLY HELIX 1 AA1 GLU A 31 TYR A 34 5 4 HELIX 2 AA2 PHE A 35 ALA A 50 1 16 HELIX 3 AA3 ALA A 57 ARG A 63 1 7 HELIX 4 AA4 ASP A 65 ALA A 76 1 12 SHEET 1 AA1 3 GLU A 93 ALA A 98 0 SHEET 2 AA1 3 ALA A 84 ASP A 89 -1 N VAL A 85 O ALA A 98 SHEET 3 AA1 3 TRP A 150 GLU A 154 -1 O GLU A 154 N ALA A 84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1