HEADER PHOTOSYNTHESIS 09-JUN-17 5O7M TITLE SINGLE-SHOT PINK BEAM SERIAL CRYSTALLOGRAPHY: PHYCOCYANIN (ONE CHIP, TITLE 2 CHIP_1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-PHYCOCYANIN ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: C-PHYCOCYANIN BETA CHAIN; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 7 ORGANISM_TAXID: 197221; SOURCE 8 STRAIN: BP-1 KEYWDS PHYCOCYANIN, SERIAL CRYSTALLOGRAPHY, PINK BEAM, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR A.MEENTS,D.OBERTHUER,J.LIESKE,V.SRAJER,I.SARROU REVDAT 2 17-JAN-24 5O7M 1 ATOM REVDAT 1 15-NOV-17 5O7M 0 JRNL AUTH A.MEENTS,M.O.WIEDORN,V.SRAJER,R.HENNING,I.SARROU, JRNL AUTH 2 J.BERGTHOLDT,M.BARTHELMESS,P.Y.A.REINKE,D.DIERKSMEYER, JRNL AUTH 3 A.TOLSTIKOVA,S.SCHAIBLE,M.MESSERSCHMIDT,C.M.OGATA, JRNL AUTH 4 D.J.KISSICK,M.H.TAFT,D.J.MANSTEIN,J.LIESKE,D.OBERTHUER, JRNL AUTH 5 R.F.FISCHETTI,H.N.CHAPMAN JRNL TITL PINK-BEAM SERIAL CRYSTALLOGRAPHY. JRNL REF NAT COMMUN V. 8 1281 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29097720 JRNL DOI 10.1038/S41467-017-01417-3 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.550 REMARK 3 COMPLETENESS FOR RANGE (%) : 59.9 REMARK 3 NUMBER OF REFLECTIONS : 8905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9178 - 4.4376 0.85 1937 219 0.1377 0.1794 REMARK 3 2 4.4376 - 3.5377 0.84 1865 211 0.1237 0.1904 REMARK 3 3 3.5377 - 3.0951 0.70 1571 163 0.1473 0.1996 REMARK 3 4 3.0951 - 2.8142 0.53 1166 132 0.1629 0.2141 REMARK 3 5 2.8142 - 2.6136 0.41 901 102 0.1615 0.2147 REMARK 3 6 2.6136 - 2.4602 0.26 573 65 0.1573 0.2251 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2675 REMARK 3 ANGLE : 0.830 3638 REMARK 3 CHIRALITY : 0.034 401 REMARK 3 PLANARITY : 0.002 472 REMARK 3 DIHEDRAL : 12.017 1578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0445 -2.2028 24.4657 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.0438 REMARK 3 T33: 0.1744 T12: -0.0297 REMARK 3 T13: 0.0314 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.1295 L22: 0.0342 REMARK 3 L33: 0.3740 L12: -0.0659 REMARK 3 L13: -0.0035 L23: -0.0142 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.0048 S13: -0.0083 REMARK 3 S21: 0.0500 S22: 0.0085 S23: -0.1659 REMARK 3 S31: -0.0415 S32: -0.0547 S33: -0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4507 -36.6345 23.2185 REMARK 3 T TENSOR REMARK 3 T11: 0.0799 T22: 0.0681 REMARK 3 T33: 0.1363 T12: 0.0026 REMARK 3 T13: 0.0338 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.1226 L22: 0.1050 REMARK 3 L33: 0.2237 L12: 0.1004 REMARK 3 L13: -0.0093 L23: -0.0784 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: -0.0785 S13: -0.0012 REMARK 3 S21: 0.0134 S22: 0.0602 S23: 0.0352 REMARK 3 S31: 0.0270 S32: 0.1071 S33: 0.0241 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4465 -26.5606 23.4498 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.0614 REMARK 3 T33: 0.0684 T12: 0.0281 REMARK 3 T13: 0.0750 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.4299 L22: 0.3464 REMARK 3 L33: 0.3638 L12: -0.2869 REMARK 3 L13: -0.0917 L23: -0.1350 REMARK 3 S TENSOR REMARK 3 S11: -0.1220 S12: -0.0314 S13: 0.0241 REMARK 3 S21: -0.0856 S22: -0.0761 S23: -0.1475 REMARK 3 S31: 0.1507 S32: 0.0251 S33: -0.8727 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9442 -11.8850 12.0680 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.0783 REMARK 3 T33: 0.1747 T12: 0.0210 REMARK 3 T13: 0.1074 T23: -0.0913 REMARK 3 L TENSOR REMARK 3 L11: 0.1407 L22: 0.0063 REMARK 3 L33: 0.2483 L12: 0.0192 REMARK 3 L13: 0.0975 L23: 0.0359 REMARK 3 S TENSOR REMARK 3 S11: -0.0630 S12: -0.0008 S13: -0.0253 REMARK 3 S21: -0.0356 S22: -0.0757 S23: 0.1127 REMARK 3 S31: -0.1012 S32: -0.1156 S33: -0.2811 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9171 11.1183 15.6076 REMARK 3 T TENSOR REMARK 3 T11: 0.1340 T22: 0.0633 REMARK 3 T33: 0.1535 T12: -0.0061 REMARK 3 T13: 0.0556 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.3828 L22: 0.1908 REMARK 3 L33: 0.4068 L12: -0.0746 REMARK 3 L13: 0.1250 L23: -0.0759 REMARK 3 S TENSOR REMARK 3 S11: -0.1649 S12: 0.0917 S13: 0.0623 REMARK 3 S21: 0.0275 S22: -0.0634 S23: -0.1112 REMARK 3 S31: 0.0951 S32: -0.0637 S33: -0.4192 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4717 19.5735 13.8151 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.0949 REMARK 3 T33: 0.0593 T12: 0.0377 REMARK 3 T13: -0.0537 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.2533 L22: 0.2763 REMARK 3 L33: 0.1975 L12: 0.0960 REMARK 3 L13: 0.0840 L23: -0.1659 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: -0.0319 S13: -0.0675 REMARK 3 S21: -0.0803 S22: -0.0837 S23: -0.0646 REMARK 3 S31: 0.0886 S32: -0.0917 S33: -0.0386 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1965 13.1292 10.4548 REMARK 3 T TENSOR REMARK 3 T11: 0.2532 T22: 0.1067 REMARK 3 T33: 0.0898 T12: 0.0168 REMARK 3 T13: -0.0136 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.1894 L22: 0.4363 REMARK 3 L33: 0.2668 L12: -0.2696 REMARK 3 L13: 0.0836 L23: -0.0988 REMARK 3 S TENSOR REMARK 3 S11: 0.1148 S12: 0.2045 S13: -0.0604 REMARK 3 S21: -0.2747 S22: -0.1454 S23: 0.0844 REMARK 3 S31: 0.0481 S32: 0.0299 S33: -0.0743 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O7M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : L REMARK 200 WAVELENGTH OR RANGE (A) : 1.15-1.25 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PRECOGNITION, EPINORM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8931 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 60.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 25.2 REMARK 200 DATA REDUNDANCY IN SHELL : 11.83 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: LAUE REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PC WAS CRYSTALLIZED IN 1.5 M AMMONIUM REMARK 280 SULFATE SOLUTION, 25 MM MES PH 6.4. THE PROTEIN CRYSTALS APPEAR REMARK 280 OVERNIGHT IN 1 MM INNER DIAMETER CAPILLARIES. THE PC CRYSTALS REMARK 280 SIZE (30 TO 40 UM) IS CORRELATED TO THE PROTEIN CONCENTRATION, REMARK 280 WHICH VARIED BETWEEN 10-15 MG/ML., SMALL TUBES, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 93.90000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.21319 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 20.23333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 93.90000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 54.21319 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 20.23333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 93.90000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 54.21319 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 20.23333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 93.90000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 54.21319 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 20.23333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 93.90000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 54.21319 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 20.23333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 93.90000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 54.21319 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.23333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 108.42638 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 40.46667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 108.42638 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 40.46667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 108.42638 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 40.46667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 108.42638 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 40.46667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 108.42638 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 40.46667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 108.42638 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 40.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 60700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -521.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 60.70000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 60.70000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 60.70000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 315 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 20 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 153 HAC1 CYC B 202 1.44 REMARK 500 HH11 ARG B 77 O HOH B 302 1.49 REMARK 500 HE ARG A 33 OE2 GLU A 149 1.54 REMARK 500 O ASN B 42 HG SER B 46 1.56 REMARK 500 HH21 ARG B 114 O ALA B 172 1.58 REMARK 500 O TYR B 74 HG1 THR B 75 1.60 REMARK 500 OD2 ASP B 144 O HOH B 301 2.02 REMARK 500 OE2 GLU A 109 O HOH A 601 2.02 REMARK 500 NH1 ARG B 77 O HOH B 302 2.12 REMARK 500 O ALA B 119 O HOH B 303 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 637 O HOH A 637 6556 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 63 73.37 -119.01 REMARK 500 ALA A 75 31.57 -93.54 REMARK 500 LEU A 111 -51.58 -130.87 REMARK 500 THR B 75 158.09 71.82 REMARK 500 CYS B 109 -62.76 -137.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 330 DISTANCE = 6.79 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MJQ RELATED DB: PDB REMARK 900 LAUE SERIAL CRYSTALLOGRAPHY, SINGLE PULSE, SINGLE CHIP, JUST REMARK 900 DIFFERENT CHIP. DBREF 5O7M A 1 162 UNP P50032 PHCA_THEEB 1 162 DBREF 5O7M B 1 172 UNP P50033 PHCB_THEEB 1 172 SEQRES 1 A 162 MET LYS THR PRO ILE THR GLU ALA ILE ALA ALA ALA ASP SEQRES 2 A 162 THR GLN GLY ARG PHE LEU SER ASN THR GLU LEU GLN ALA SEQRES 3 A 162 VAL ASP GLY ARG PHE LYS ARG ALA VAL ALA SER MET GLU SEQRES 4 A 162 ALA ALA ARG ALA LEU THR ASN ASN ALA GLN SER LEU ILE SEQRES 5 A 162 ASP GLY ALA ALA GLN ALA VAL TYR GLN LYS PHE PRO TYR SEQRES 6 A 162 THR THR THR MET GLN GLY SER GLN TYR ALA SER THR PRO SEQRES 7 A 162 GLU GLY LYS ALA LYS CYS ALA ARG ASP ILE GLY TYR TYR SEQRES 8 A 162 LEU ARG MET VAL THR TYR CYS LEU VAL ALA GLY GLY THR SEQRES 9 A 162 GLY PRO MET ASP GLU TYR LEU ILE ALA GLY LEU SER GLU SEQRES 10 A 162 ILE ASN SER THR PHE ASP LEU SER PRO SER TRP TYR ILE SEQRES 11 A 162 GLU ALA LEU LYS TYR ILE LYS ALA ASN HIS GLY LEU THR SEQRES 12 A 162 GLY GLN ALA ALA VAL GLU ALA ASN ALA TYR ILE ASP TYR SEQRES 13 A 162 ALA ILE ASN ALA LEU SER SEQRES 1 B 172 MET LEU ASP ALA PHE ALA LYS VAL VAL ALA GLN ALA ASP SEQRES 2 B 172 ALA ARG GLY GLU PHE LEU THR ASN ALA GLN PHE ASP ALA SEQRES 3 B 172 LEU SER ASN LEU VAL LYS GLU GLY ASN LYS ARG LEU ASP SEQRES 4 B 172 ALA VAL ASN ARG ILE THR SER ASN ALA SER THR ILE VAL SEQRES 5 B 172 ALA ASN ALA ALA ARG ALA LEU PHE ALA GLU GLN PRO GLN SEQRES 6 B 172 LEU ILE GLN PRO GLY GLY MEN ALA TYR THR ASN ARG ARG SEQRES 7 B 172 MET ALA ALA CYS LEU ARG ASP MET GLU ILE ILE LEU ARG SEQRES 8 B 172 TYR VAL THR TYR ALA ILE LEU ALA GLY ASP SER SER VAL SEQRES 9 B 172 LEU ASP ASP ARG CYS LEU ASN GLY LEU ARG GLU THR TYR SEQRES 10 B 172 GLN ALA LEU GLY THR PRO GLY SER SER VAL ALA VAL ALA SEQRES 11 B 172 ILE GLN LYS MET LYS ASP ALA ALA ILE ALA ILE ALA ASN SEQRES 12 B 172 ASP PRO ASN GLY ILE THR PRO GLY ASP CYS SER ALA LEU SEQRES 13 B 172 MET SER GLU ILE ALA GLY TYR PHE ASP ARG ALA ALA ALA SEQRES 14 B 172 ALA VAL ALA MODRES 5O7M MEN B 72 ASN MODIFIED RESIDUE HET MEN B 72 15 HET CYC A 501 80 HET CYC B 201 80 HET CYC B 202 80 HETNAM MEN N-METHYL ASPARAGINE HETNAM CYC PHYCOCYANOBILIN FORMUL 2 MEN C5 H10 N2 O3 FORMUL 3 CYC 3(C33 H40 N4 O6) FORMUL 6 HOH *67(H2 O) HELIX 1 AA1 THR A 3 GLY A 16 1 14 HELIX 2 AA2 SER A 20 ASN A 47 1 28 HELIX 3 AA3 ASN A 47 PHE A 63 1 17 HELIX 4 AA4 PRO A 64 THR A 68 5 5 HELIX 5 AA5 THR A 77 GLY A 102 1 26 HELIX 6 AA6 THR A 104 LEU A 111 1 8 HELIX 7 AA7 GLY A 114 PHE A 122 1 9 HELIX 8 AA8 SER A 125 HIS A 140 1 16 HELIX 9 AA9 GLY A 144 SER A 162 1 19 HELIX 10 AB1 ASP B 3 GLY B 16 1 14 HELIX 11 AB2 THR B 20 GLU B 33 1 14 HELIX 12 AB3 GLU B 33 SER B 46 1 14 HELIX 13 AB4 ASN B 47 GLN B 63 1 17 HELIX 14 AB5 PRO B 64 ILE B 67 5 4 HELIX 15 AB6 THR B 75 GLY B 100 1 26 HELIX 16 AB7 SER B 102 CYS B 109 1 8 HELIX 17 AB8 GLY B 112 LEU B 120 1 9 HELIX 18 AB9 PRO B 123 ASN B 143 1 21 HELIX 19 AC1 CYS B 153 ALA B 172 1 20 LINK SG CYS A 84 CAC CYC A 501 1555 1555 1.84 LINK C GLY B 71 N MEN B 72 1555 1555 1.33 LINK C MEN B 72 N ALA B 73 1555 1555 1.33 LINK SG CYS B 82 CAC CYC B 201 1555 1555 1.79 LINK SG CYS B 153 CAC CYC B 202 1555 1555 1.73 SITE 1 AC1 23 SER A 72 GLN A 73 TYR A 74 ALA A 75 SITE 2 AC1 23 GLY A 80 LYS A 83 CYS A 84 ARG A 86 SITE 3 AC1 23 ASP A 87 TYR A 90 TYR A 110 ILE A 118 SITE 4 AC1 23 PHE A 122 LEU A 124 TRP A 128 TYR A 129 SITE 5 AC1 23 HOH A 606 HOH A 616 HOH A 629 ARG B 57 SITE 6 AC1 23 THR B 75 ASN B 76 HOH B 320 SITE 1 AC2 13 LEU B 66 MEN B 72 ARG B 77 ARG B 78 SITE 2 AC2 13 ALA B 81 CYS B 82 ARG B 84 ASP B 85 SITE 3 AC2 13 ARG B 108 LEU B 113 LEU B 120 THR B 122 SITE 4 AC2 13 SER B 126 SITE 1 AC3 16 ASP A 28 ARG A 33 GLN A 145 ASN B 35 SITE 2 AC3 16 LYS B 36 ASP B 39 ALA B 142 ASN B 143 SITE 3 AC3 16 ASP B 144 ILE B 148 THR B 149 PRO B 150 SITE 4 AC3 16 GLY B 151 CYS B 153 HOH B 314 HOH B 317 CRYST1 187.800 187.800 60.700 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005325 0.003074 0.000000 0.00000 SCALE2 0.000000 0.006149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016474 0.00000