HEADER PLANT PROTEIN 09-JUN-17 5O7Q TITLE CRYSTAL STRUCTURE OF A SINGLE CHAIN MONELLIN MUTANT (Y65R) PH 5.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONELLIN CHAIN B,MONELLIN CHAIN A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MONELLIN CHAIN II,MONELLIN CHAIN I; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DIOSCOREOPHYLLUM CUMMINSII; SOURCE 3 ORGANISM_COMMON: SERENDIPITY BERRY; SOURCE 4 ORGANISM_TAXID: 3457; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PLANT PROTEIN, SWEET PROTEIN, SWEETENER EXPDTA X-RAY DIFFRACTION AUTHOR A.PICA,A.MERLINO REVDAT 3 17-JAN-24 5O7Q 1 REMARK REVDAT 2 07-FEB-18 5O7Q 1 JRNL REVDAT 1 10-JAN-18 5O7Q 0 JRNL AUTH A.PICA,S.LEONE,R.DI GIROLAMO,F.DONNARUMMA,A.EMENDATO, JRNL AUTH 2 M.F.REGA,A.MERLINO,D.PICONE JRNL TITL PH DRIVEN FIBRILLAR AGGREGATION OF THE SUPER-SWEET PROTEIN JRNL TITL 2 Y65R-MNEI: A STEP-BY-STEP STRUCTURAL ANALYSIS. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1862 808 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 29288772 JRNL DOI 10.1016/J.BBAGEN.2017.12.012 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1083 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1480 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.4320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1534 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32000 REMARK 3 B22 (A**2) : -1.59000 REMARK 3 B33 (A**2) : 2.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.037 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1627 ; 0.029 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1518 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2190 ; 2.141 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3518 ; 1.125 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 189 ; 5.354 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;29.944 ;22.892 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 291 ;14.203 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.631 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 221 ; 0.170 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1767 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 358 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 753 ; 1.911 ; 1.637 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 752 ; 1.899 ; 1.635 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 940 ; 2.700 ; 2.429 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 941 ; 2.702 ; 2.432 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 873 ; 3.119 ; 2.142 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 873 ; 3.116 ; 2.143 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1248 ; 4.475 ; 3.070 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6351 ; 5.861 ;32.107 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6351 ; 5.861 ;32.105 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 96 B 1 96 5278 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4425 -11.9521 -12.5893 REMARK 3 T TENSOR REMARK 3 T11: 0.0447 T22: 0.0627 REMARK 3 T33: 0.0329 T12: -0.0127 REMARK 3 T13: 0.0304 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0749 L22: 1.1646 REMARK 3 L33: 1.0558 L12: -0.0721 REMARK 3 L13: 0.1141 L23: -0.1256 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: -0.0336 S13: 0.0353 REMARK 3 S21: -0.0480 S22: -0.0440 S23: -0.0170 REMARK 3 S31: 0.1046 S32: -0.0115 S33: -0.0146 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2825 -32.4951 -18.9239 REMARK 3 T TENSOR REMARK 3 T11: 0.0069 T22: 0.0655 REMARK 3 T33: 0.0597 T12: 0.0126 REMARK 3 T13: 0.0060 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.8059 L22: 0.1581 REMARK 3 L33: 0.2630 L12: 0.2629 REMARK 3 L13: 0.0643 L23: 0.1495 REMARK 3 S TENSOR REMARK 3 S11: -0.0433 S12: -0.0253 S13: -0.0378 REMARK 3 S21: -0.0222 S22: 0.0192 S23: -0.0001 REMARK 3 S31: -0.0254 S32: -0.0012 S33: 0.0241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.065200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.82800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2O9U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1 M BIS/TRIS PH 5.5, REMARK 280 0.2 M (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.25850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.25850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 17.66950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.27250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 17.66950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.27250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.25850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 17.66950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.27250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.25850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 17.66950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.27250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 275 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 48 REMARK 465 ASN A 49 REMARK 465 GLU A 50 REMARK 465 GLY A 51 REMARK 465 PHE A 52 REMARK 465 ARG A 53 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 22 CD GLU A 22 OE2 -0.085 REMARK 500 CYS A 41 CA CYS A 41 CB -0.099 REMARK 500 GLU B 22 CD GLU B 22 OE2 -0.076 REMARK 500 GLU B 23 CD GLU B 23 OE2 -0.067 REMARK 500 TYR B 47 CZ TYR B 47 CE2 -0.090 REMARK 500 GLU B 77 CD GLU B 77 OE2 0.086 REMARK 500 GLY B 91 N GLY B 91 CA -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 7 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 PHE B 18 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 39 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 39 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 LEU B 62 CB - CG - CD1 ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG B 65 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP B 68 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 8 41.30 -104.60 REMARK 500 ASN A 35 -62.42 -104.32 REMARK 500 LYS B 36 146.53 -170.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 103 DBREF 5O7Q A 1 48 UNP P02882 MONB_DIOCU 1 48 DBREF 5O7Q A 52 96 UNP P02881 MONA_DIOCU 1 45 DBREF 5O7Q B 1 48 UNP P02882 MONB_DIOCU 1 48 DBREF 5O7Q B 52 96 UNP P02881 MONA_DIOCU 1 45 SEQADV 5O7Q ASN A 49 UNP P02882 LINKER SEQADV 5O7Q GLU A 50 UNP P02882 LINKER SEQADV 5O7Q GLY A 51 UNP P02882 LINKER SEQADV 5O7Q ARG A 65 UNP P02881 TYR 14 CONFLICT SEQADV 5O7Q ASN B 49 UNP P02882 LINKER SEQADV 5O7Q GLU B 50 UNP P02882 LINKER SEQADV 5O7Q GLY B 51 UNP P02882 LINKER SEQADV 5O7Q ARG B 65 UNP P02881 TYR 14 CONFLICT SEQRES 1 A 96 GLY GLU TRP GLU ILE ILE ASP ILE GLY PRO PHE THR GLN SEQRES 2 A 96 ASN LEU GLY LYS PHE ALA VAL ASP GLU GLU ASN LYS ILE SEQRES 3 A 96 GLY GLN TYR GLY ARG LEU THR PHE ASN LYS VAL ILE ARG SEQRES 4 A 96 PRO CYS MET LYS LYS THR ILE TYR GLU ASN GLU GLY PHE SEQRES 5 A 96 ARG GLU ILE LYS GLY TYR GLU TYR GLN LEU TYR VAL ARG SEQRES 6 A 96 ALA SER ASP LYS LEU PHE ARG ALA ASP ILE SER GLU ASP SEQRES 7 A 96 TYR LYS THR ARG GLY ARG LYS LEU LEU ARG PHE ASN GLY SEQRES 8 A 96 PRO VAL PRO PRO PRO SEQRES 1 B 96 GLY GLU TRP GLU ILE ILE ASP ILE GLY PRO PHE THR GLN SEQRES 2 B 96 ASN LEU GLY LYS PHE ALA VAL ASP GLU GLU ASN LYS ILE SEQRES 3 B 96 GLY GLN TYR GLY ARG LEU THR PHE ASN LYS VAL ILE ARG SEQRES 4 B 96 PRO CYS MET LYS LYS THR ILE TYR GLU ASN GLU GLY PHE SEQRES 5 B 96 ARG GLU ILE LYS GLY TYR GLU TYR GLN LEU TYR VAL ARG SEQRES 6 B 96 ALA SER ASP LYS LEU PHE ARG ALA ASP ILE SER GLU ASP SEQRES 7 B 96 TYR LYS THR ARG GLY ARG LYS LEU LEU ARG PHE ASN GLY SEQRES 8 B 96 PRO VAL PRO PRO PRO HET SO4 A 101 5 HET SO4 A 102 5 HET SO4 A 103 5 HET SO4 B 101 5 HET SO4 B 102 5 HET PEG B 103 7 HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 PEG C4 H10 O3 FORMUL 9 HOH *126(H2 O) HELIX 1 AA1 GLY A 9 GLY A 27 1 19 HELIX 2 AA2 GLY B 9 GLY B 27 1 19 SHEET 1 AA1 5 GLU A 2 ILE A 6 0 SHEET 2 AA1 5 PHE A 34 ILE A 46 -1 O LYS A 43 N GLU A 4 SHEET 3 AA1 5 GLY A 57 ALA A 66 -1 O ARG A 65 N LYS A 36 SHEET 4 AA1 5 LYS A 69 ASP A 78 -1 O ALA A 73 N LEU A 62 SHEET 5 AA1 5 ARG A 84 ASN A 90 -1 O LEU A 87 N ASP A 74 SHEET 1 AA2 5 GLU B 2 ILE B 6 0 SHEET 2 AA2 5 PHE B 34 GLU B 48 -1 O LYS B 43 N GLU B 4 SHEET 3 AA2 5 GLU B 54 ALA B 66 -1 O GLU B 59 N LYS B 44 SHEET 4 AA2 5 LYS B 69 ASP B 78 -1 O ILE B 75 N TYR B 60 SHEET 5 AA2 5 GLY B 83 ASN B 90 -1 O ASN B 90 N ARG B 72 CISPEP 1 ARG A 39 PRO A 40 0 -4.63 CISPEP 2 GLY A 91 PRO A 92 0 0.82 CISPEP 3 ARG B 39 PRO B 40 0 -0.81 CISPEP 4 ARG B 39 PRO B 40 0 -0.25 CISPEP 5 GLY B 91 PRO B 92 0 15.89 SITE 1 AC1 6 ARG A 72 ARG A 88 HOH A 219 ARG B 72 SITE 2 AC1 6 ARG B 88 HOH B 212 SITE 1 AC2 4 PHE A 11 LYS A 43 ARG B 31 ARG B 82 SITE 1 AC3 4 LYS A 36 ILE A 38 ARG A 39 HOH A 207 SITE 1 AC4 5 ARG A 82 LYS B 69 TYR B 79 HOH B 208 SITE 2 AC4 5 HOH B 258 SITE 1 AC5 6 GLY B 30 LEU B 32 TYR B 79 LYS B 80 SITE 2 AC5 6 ARG B 82 HOH B 204 SITE 1 AC6 6 ASP B 7 GLY B 9 PRO B 10 PHE B 11 SITE 2 AC6 6 THR B 12 LYS B 36 CRYST1 35.339 84.545 130.517 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028297 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007662 0.00000