HEADER TRANSCRIPTION 14-JUN-17 5O8Z TITLE CONFORMATIONAL DYNAMISM FOR DNA INTERACTION IN SALMONELLA TYPHIMURIUM TITLE 2 RCSB RESPONSE REGULATOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN RCSB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / SOURCE 3 ATCC 700720); SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2 / SGSC1412 / ATCC 700720; SOURCE 6 GENE: RCSB, STM2270; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RESPONSE REGULATOR TRANSCRIPTIONAL FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.CASINO,A.MARINA,L.MIGUEL-ROMERO,J.HUESA REVDAT 4 17-JAN-24 5O8Z 1 LINK REVDAT 3 24-JAN-18 5O8Z 1 JRNL REVDAT 2 13-DEC-17 5O8Z 1 JRNL REVDAT 1 15-NOV-17 5O8Z 0 JRNL AUTH P.CASINO,L.MIGUEL-ROMERO,J.HUESA,P.GARCIA, JRNL AUTH 2 F.GARCIA-DEL PORTILLO,A.MARINA JRNL TITL CONFORMATIONAL DYNAMISM FOR DNA INTERACTION IN THE JRNL TITL 2 SALMONELLA RCSB RESPONSE REGULATOR. JRNL REF NUCLEIC ACIDS RES. V. 46 456 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29186528 JRNL DOI 10.1093/NAR/GKX1164 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 20461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1026 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1484 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3044 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.15000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : -0.12000 REMARK 3 B13 (A**2) : 1.29000 REMARK 3 B23 (A**2) : -0.30000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.291 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.275 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3112 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3123 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4223 ; 1.367 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7244 ; 0.936 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 411 ; 5.427 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;38.049 ;25.673 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;16.583 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.284 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3381 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 533 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1638 ; 1.298 ; 3.327 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1637 ; 1.294 ; 3.324 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2042 ; 2.274 ; 4.968 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2043 ; 2.274 ; 4.972 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1474 ; 1.071 ; 3.396 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1469 ; 1.072 ; 3.402 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2173 ; 1.863 ; 5.043 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3328 ; 4.321 ;39.676 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3321 ; 4.303 ;39.633 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7158 1.2356 -0.3867 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.0262 REMARK 3 T33: 0.0926 T12: -0.0230 REMARK 3 T13: 0.0266 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 2.5526 L22: 2.3042 REMARK 3 L33: 3.5635 L12: -0.3462 REMARK 3 L13: -0.8235 L23: 0.0923 REMARK 3 S TENSOR REMARK 3 S11: -0.0462 S12: 0.0446 S13: 0.0676 REMARK 3 S21: -0.2733 S22: 0.0780 S23: -0.1679 REMARK 3 S31: 0.0743 S32: 0.0070 S33: -0.0318 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9898 6.6544 -8.6616 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.2254 REMARK 3 T33: 0.0717 T12: 0.0058 REMARK 3 T13: -0.0533 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 6.7746 L22: 9.0049 REMARK 3 L33: 0.2730 L12: -1.9453 REMARK 3 L13: -0.9335 L23: 1.3693 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: 0.3199 S13: 0.1233 REMARK 3 S21: -0.3031 S22: 0.0243 S23: 0.2219 REMARK 3 S31: -0.0350 S32: -0.0409 S33: 0.0155 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2115 23.0804 9.0889 REMARK 3 T TENSOR REMARK 3 T11: 0.4937 T22: 0.0864 REMARK 3 T33: 0.3583 T12: 0.0117 REMARK 3 T13: -0.0601 T23: -0.0977 REMARK 3 L TENSOR REMARK 3 L11: 6.7396 L22: 1.6392 REMARK 3 L33: 2.1752 L12: 0.1994 REMARK 3 L13: -1.6178 L23: -1.1304 REMARK 3 S TENSOR REMARK 3 S11: -0.4206 S12: -0.1366 S13: 1.1175 REMARK 3 S21: 0.3571 S22: 0.2704 S23: -0.2060 REMARK 3 S31: -0.3713 S32: -0.0973 S33: 0.1502 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0728 -5.4820 20.7179 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: 0.0424 REMARK 3 T33: 0.1045 T12: -0.0148 REMARK 3 T13: -0.0093 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.9421 L22: 2.8591 REMARK 3 L33: 3.1075 L12: -0.9952 REMARK 3 L13: 0.3097 L23: -0.1952 REMARK 3 S TENSOR REMARK 3 S11: -0.0811 S12: -0.2315 S13: -0.2998 REMARK 3 S21: -0.0360 S22: 0.1925 S23: 0.1861 REMARK 3 S31: 0.2294 S32: -0.2095 S33: -0.1114 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 130 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2382 4.7249 29.2757 REMARK 3 T TENSOR REMARK 3 T11: 0.0413 T22: 0.1643 REMARK 3 T33: 0.3808 T12: -0.0106 REMARK 3 T13: -0.1096 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.8167 L22: 8.5263 REMARK 3 L33: 7.2552 L12: -0.8837 REMARK 3 L13: -1.5506 L23: 6.0831 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: -0.2238 S13: 0.4516 REMARK 3 S21: 0.1840 S22: -0.0942 S23: -0.7263 REMARK 3 S31: -0.1330 S32: 0.2482 S33: 0.1487 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 153 B 207 REMARK 3 ORIGIN FOR THE GROUP (A): -19.4066 24.0703 26.0564 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.1043 REMARK 3 T33: 0.2411 T12: 0.0536 REMARK 3 T13: 0.0918 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 1.8996 L22: 5.4443 REMARK 3 L33: 1.8922 L12: -2.3516 REMARK 3 L13: -0.2127 L23: 0.8472 REMARK 3 S TENSOR REMARK 3 S11: 0.2174 S12: 0.1501 S13: 0.3822 REMARK 3 S21: -0.2122 S22: 0.0267 S23: -0.0253 REMARK 3 S31: -0.3593 S32: -0.0310 S33: -0.2442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21487 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.85100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1A04 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29% JEFFAMINE ED2003 0.1M LITHIUM REMARK 280 SULFATE TRIS PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 127 REMARK 465 LYS A 128 REMARK 465 PHE A 129 REMARK 465 THR A 130 REMARK 465 GLY A 144 REMARK 465 GLY A 145 REMARK 465 TYR A 146 REMARK 465 GLY A 147 REMARK 465 ASP A 148 REMARK 465 LYS A 149 REMARK 465 SER A 211 REMARK 465 PRO A 212 REMARK 465 THR A 213 REMARK 465 ASP A 214 REMARK 465 LYS A 215 REMARK 465 GLU A 216 REMARK 465 MET B 1 REMARK 465 SER B 211 REMARK 465 PRO B 212 REMARK 465 THR B 213 REMARK 465 ASP B 214 REMARK 465 LYS B 215 REMARK 465 GLU B 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 VAL A 134 CG1 CG2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 162 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 THR A 169 OG1 CG2 REMARK 470 ILE A 171 CG1 CG2 CD1 REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 SER A 178 OG REMARK 470 ILE A 179 CG1 CG2 CD1 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 SER A 183 OG REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 VAL A 195 CG1 CG2 REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 ASP A 198 CG OD1 OD2 REMARK 470 VAL A 208 CG1 CG2 REMARK 470 ASN B 2 CG OD1 ND2 REMARK 470 GLN B 25 CG CD OE1 NE2 REMARK 470 SER B 142 OG REMARK 470 ASP B 148 CG OD1 OD2 REMARK 470 ARG B 160 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 170 CG CD OE1 OE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 LYS B 180 CG CD CE NZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD1 REMARK 620 2 ASP A 56 OD2 86.9 REMARK 620 3 SER A 58 O 86.1 84.5 REMARK 620 4 HOH A 418 O 87.3 80.2 163.6 REMARK 620 5 HOH A 428 O 91.2 178.0 95.6 99.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 301 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 BEF A 301 F1 111.6 REMARK 620 3 BEF A 301 F2 95.4 108.0 REMARK 620 4 BEF A 301 F3 109.5 118.7 111.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 11 OD1 REMARK 620 2 ASP B 56 OD2 88.4 REMARK 620 3 SER B 58 O 82.4 77.4 REMARK 620 4 HOH B 420 O 83.7 169.9 95.3 REMARK 620 5 HOH B 432 O 87.0 96.4 167.9 89.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF B 301 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 56 OD1 REMARK 620 2 BEF B 301 F1 111.6 REMARK 620 3 BEF B 301 F2 99.4 108.1 REMARK 620 4 BEF B 301 F3 107.2 118.7 110.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 DBREF 5O8Z A 1 216 UNP P58663 RCSB_SALTY 1 216 DBREF 5O8Z B 1 216 UNP P58663 RCSB_SALTY 1 216 SEQRES 1 A 216 MET ASN ASN MET ASN VAL ILE ILE ALA ASP ASP HIS PRO SEQRES 2 A 216 ILE VAL LEU PHE GLY ILE ARG LYS SER LEU GLU GLN ILE SEQRES 3 A 216 GLU TRP VAL ASN VAL VAL GLY GLU PHE GLU ASP SER THR SEQRES 4 A 216 ALA LEU ILE ASN ASN LEU PRO LYS LEU ASP ALA HIS VAL SEQRES 5 A 216 LEU ILE THR ASP LEU SER MET PRO GLY ASP LYS TYR GLY SEQRES 6 A 216 ASP GLY ILE THR LEU ILE LYS TYR ILE LYS ARG HIS PHE SEQRES 7 A 216 PRO SER LEU SER ILE ILE VAL LEU THR MET ASN ASN ASN SEQRES 8 A 216 PRO ALA ILE LEU SER ALA VAL LEU ASP LEU ASP ILE GLU SEQRES 9 A 216 GLY ILE VAL LEU LYS GLN GLY ALA PRO THR ASP LEU PRO SEQRES 10 A 216 LYS ALA LEU ALA ALA LEU GLN LYS GLY LYS LYS PHE THR SEQRES 11 A 216 PRO GLU SER VAL SER ARG LEU LEU GLU LYS ILE SER ALA SEQRES 12 A 216 GLY GLY TYR GLY ASP LYS ARG LEU SER PRO LYS GLU SER SEQRES 13 A 216 GLU VAL LEU ARG LEU PHE ALA GLU GLY PHE LEU VAL THR SEQRES 14 A 216 GLU ILE ALA LYS LYS LEU ASN ARG SER ILE LYS THR ILE SEQRES 15 A 216 SER SER GLN LYS LYS SER ALA MET MET LYS LEU GLY VAL SEQRES 16 A 216 GLU ASN ASP ILE ALA LEU LEU ASN TYR LEU SER SER VAL SEQRES 17 A 216 THR LEU SER PRO THR ASP LYS GLU SEQRES 1 B 216 MET ASN ASN MET ASN VAL ILE ILE ALA ASP ASP HIS PRO SEQRES 2 B 216 ILE VAL LEU PHE GLY ILE ARG LYS SER LEU GLU GLN ILE SEQRES 3 B 216 GLU TRP VAL ASN VAL VAL GLY GLU PHE GLU ASP SER THR SEQRES 4 B 216 ALA LEU ILE ASN ASN LEU PRO LYS LEU ASP ALA HIS VAL SEQRES 5 B 216 LEU ILE THR ASP LEU SER MET PRO GLY ASP LYS TYR GLY SEQRES 6 B 216 ASP GLY ILE THR LEU ILE LYS TYR ILE LYS ARG HIS PHE SEQRES 7 B 216 PRO SER LEU SER ILE ILE VAL LEU THR MET ASN ASN ASN SEQRES 8 B 216 PRO ALA ILE LEU SER ALA VAL LEU ASP LEU ASP ILE GLU SEQRES 9 B 216 GLY ILE VAL LEU LYS GLN GLY ALA PRO THR ASP LEU PRO SEQRES 10 B 216 LYS ALA LEU ALA ALA LEU GLN LYS GLY LYS LYS PHE THR SEQRES 11 B 216 PRO GLU SER VAL SER ARG LEU LEU GLU LYS ILE SER ALA SEQRES 12 B 216 GLY GLY TYR GLY ASP LYS ARG LEU SER PRO LYS GLU SER SEQRES 13 B 216 GLU VAL LEU ARG LEU PHE ALA GLU GLY PHE LEU VAL THR SEQRES 14 B 216 GLU ILE ALA LYS LYS LEU ASN ARG SER ILE LYS THR ILE SEQRES 15 B 216 SER SER GLN LYS LYS SER ALA MET MET LYS LEU GLY VAL SEQRES 16 B 216 GLU ASN ASP ILE ALA LEU LEU ASN TYR LEU SER SER VAL SEQRES 17 B 216 THR LEU SER PRO THR ASP LYS GLU HET BEF A 301 4 HET MG A 302 1 HET BEF B 301 4 HET MG B 302 1 HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MG MAGNESIUM ION FORMUL 3 BEF 2(BE F3 1-) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *88(H2 O) HELIX 1 AA1 HIS A 12 GLN A 25 1 14 HELIX 2 AA2 ASP A 37 LEU A 45 1 9 HELIX 3 AA3 PRO A 46 LEU A 48 5 3 HELIX 4 AA4 ASP A 66 PHE A 78 1 13 HELIX 5 AA5 ASN A 91 LEU A 101 1 11 HELIX 6 AA6 THR A 114 GLY A 126 1 13 HELIX 7 AA7 GLU A 132 ALA A 143 1 12 HELIX 8 AA8 SER A 152 GLY A 165 1 14 HELIX 9 AA9 LEU A 167 LYS A 174 1 8 HELIX 10 AB1 SER A 178 GLY A 194 1 17 HELIX 11 AB2 ASN A 197 THR A 209 1 13 HELIX 12 AB3 HIS B 12 GLU B 24 1 13 HELIX 13 AB4 ASP B 37 LEU B 45 1 9 HELIX 14 AB5 PRO B 46 LEU B 48 5 3 HELIX 15 AB6 ASP B 66 PHE B 78 1 13 HELIX 16 AB7 ASN B 91 LEU B 101 1 11 HELIX 17 AB8 THR B 114 LYS B 125 1 12 HELIX 18 AB9 PRO B 131 GLY B 145 1 15 HELIX 19 AC1 SER B 152 ALA B 163 1 12 HELIX 20 AC2 LEU B 167 ASN B 176 1 10 HELIX 21 AC3 SER B 178 GLY B 194 1 17 HELIX 22 AC4 ASN B 197 VAL B 208 1 12 SHEET 1 AA1 5 VAL A 29 PHE A 35 0 SHEET 2 AA1 5 MET A 4 ALA A 9 1 N VAL A 6 O ASN A 30 SHEET 3 AA1 5 VAL A 52 THR A 55 1 O VAL A 52 N ILE A 7 SHEET 4 AA1 5 SER A 82 THR A 87 1 O ILE A 84 N LEU A 53 SHEET 5 AA1 5 GLY A 105 LEU A 108 1 O VAL A 107 N VAL A 85 SHEET 1 AA2 5 VAL B 29 PHE B 35 0 SHEET 2 AA2 5 MET B 4 ALA B 9 1 N VAL B 6 O ASN B 30 SHEET 3 AA2 5 VAL B 52 THR B 55 1 O ILE B 54 N ILE B 7 SHEET 4 AA2 5 SER B 82 THR B 87 1 O ILE B 84 N LEU B 53 SHEET 5 AA2 5 GLY B 105 LEU B 108 1 O VAL B 107 N VAL B 85 LINK OD1 ASP A 11 MG MG A 302 1555 1555 2.09 LINK OD1 ASP A 56 BE BEF A 301 1555 1555 1.81 LINK OD2 ASP A 56 MG MG A 302 1555 1555 2.17 LINK O SER A 58 MG MG A 302 1555 1555 2.04 LINK MG MG A 302 O HOH A 418 1555 1555 2.12 LINK MG MG A 302 O HOH A 428 1555 1555 1.89 LINK OD1 ASP B 11 MG MG B 302 1555 1555 2.13 LINK OD1 ASP B 56 BE BEF B 301 1555 1555 1.84 LINK OD2 ASP B 56 MG MG B 302 1555 1555 2.08 LINK O SER B 58 MG MG B 302 1555 1555 2.21 LINK MG MG B 302 O HOH B 420 1555 1555 2.01 LINK MG MG B 302 O HOH B 432 1555 1555 2.08 SITE 1 AC1 10 ASP A 56 LEU A 57 SER A 58 THR A 87 SITE 2 AC1 10 MET A 88 LYS A 109 MG A 302 HOH A 418 SITE 3 AC1 10 HOH A 422 HOH A 428 SITE 1 AC2 6 ASP A 11 ASP A 56 SER A 58 BEF A 301 SITE 2 AC2 6 HOH A 418 HOH A 428 SITE 1 AC3 9 ASP B 56 LEU B 57 SER B 58 THR B 87 SITE 2 AC3 9 MET B 88 ASN B 89 LYS B 109 MG B 302 SITE 3 AC3 9 HOH B 420 SITE 1 AC4 6 ASP B 11 ASP B 56 SER B 58 BEF B 301 SITE 2 AC4 6 HOH B 420 HOH B 432 CRYST1 37.392 54.266 54.986 62.60 81.61 79.66 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026744 -0.004881 -0.001974 0.00000 SCALE2 0.000000 0.018732 -0.009334 0.00000 SCALE3 0.000000 0.000000 0.020539 0.00000