HEADER TRANSCRIPTION 19-JUN-17 5O9I TITLE CRYSTAL STRUCTURE OF TRANSCRIPTION FACTOR IIB MVU MINI-INTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIB,TRANSCRIPTION COMPND 3 INITIATION FACTOR IIB; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: TFIIB,TFIIB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS VULCANIUS; SOURCE 3 ORGANISM_TAXID: 579137; SOURCE 4 STRAIN: ATCC 700851 / DSM 12094 / M7; SOURCE 5 GENE: TFB, METVU_0030; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION FACTOR IIB, MINI-INTEIN, HINT FOLD, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.M.MIKULA,H.IWAI,M.LI,A.WLODAWER REVDAT 3 30-MAR-22 5O9I 1 REMARK REVDAT 2 06-DEC-17 5O9I 1 JRNL REVDAT 1 01-NOV-17 5O9I 0 JRNL AUTH H.IWAI,K.M.MIKULA,J.S.OEEMIG,D.ZHOU,M.LI,A.WLODAWER JRNL TITL STRUCTURAL BASIS FOR THE PERSISTENCE OF HOMING ENDONUCLEASES JRNL TITL 2 IN TRANSCRIPTION FACTOR IIB INTEINS. JRNL REF J. MOL. BIOL. V. 429 3942 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 29055778 JRNL DOI 10.1016/J.JMB.2017.10.016 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 11837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 580 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 837 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.82000 REMARK 3 B22 (A**2) : 2.03000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.344 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.363 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.297 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2801 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2765 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3773 ; 1.957 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6422 ; 1.101 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 8.613 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;39.352 ;25.242 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;22.089 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.284 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3030 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 526 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1384 ; 2.922 ; 4.447 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1383 ; 2.922 ; 4.447 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1723 ; 4.750 ; 6.663 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1724 ; 4.749 ; 6.663 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1416 ; 2.996 ; 4.835 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1414 ; 2.993 ; 4.835 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2050 ; 5.033 ; 7.081 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3028 ; 8.835 ;52.953 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3027 ; 8.819 ;52.933 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 194 B 5 194 9930 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3190 21.5850 53.6320 REMARK 3 T TENSOR REMARK 3 T11: 0.3140 T22: 0.7440 REMARK 3 T33: 0.2348 T12: 0.0594 REMARK 3 T13: -0.0427 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 5.7377 L22: 1.0086 REMARK 3 L33: 1.5961 L12: -1.4067 REMARK 3 L13: -0.6108 L23: -0.8577 REMARK 3 S TENSOR REMARK 3 S11: 0.3462 S12: 1.9584 S13: -0.3069 REMARK 3 S21: 0.3465 S22: -0.6008 S23: -0.0521 REMARK 3 S31: -0.6814 S32: -0.0007 S33: 0.2546 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 194 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5350 27.5140 21.6570 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.1165 REMARK 3 T33: 0.3236 T12: 0.0081 REMARK 3 T13: 0.0267 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 5.8988 L22: 0.3741 REMARK 3 L33: 0.5875 L12: -0.4154 REMARK 3 L13: 0.4189 L23: 0.4028 REMARK 3 S TENSOR REMARK 3 S11: 0.1572 S12: 0.3163 S13: -0.0493 REMARK 3 S21: 0.0296 S22: -0.0988 S23: -0.0190 REMARK 3 S31: 0.0353 S32: -0.0422 S33: -0.0584 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12418 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 56.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 1.01100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX, MR-ROSETTA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM CHLORIDE, PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.09150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.62250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.09150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.62250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 TYR A 0 REMARK 465 LEU A 123 REMARK 465 PRO A 124 REMARK 465 ASN A 125 REMARK 465 ILE A 126 REMARK 465 GLU A 127 REMARK 465 GLU A 128 REMARK 465 ASN A 129 REMARK 465 ARG A 130 REMARK 465 LYS A 131 REMARK 465 LEU A 132 REMARK 465 GLU A 133 REMARK 465 PRO A 134 REMARK 465 ASN A 135 REMARK 465 ILE A 136 REMARK 465 GLU A 137 REMARK 465 GLU A 138 REMARK 465 ASN A 139 REMARK 465 ARG A 140 REMARK 465 LYS A 141 REMARK 465 ALA A 191 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 GLU B 128 REMARK 465 ASN B 129 REMARK 465 ARG B 130 REMARK 465 LYS B 131 REMARK 465 LEU B 132 REMARK 465 GLU B 133 REMARK 465 PRO B 134 REMARK 465 ASN B 135 REMARK 465 ILE B 136 REMARK 465 GLU B 137 REMARK 465 GLU B 138 REMARK 465 ASN B 139 REMARK 465 ARG B 140 REMARK 465 LYS B 141 REMARK 465 LEU B 142 REMARK 465 GLU B 143 REMARK 465 ALA B 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 100 ND2 ASN B 125 4547 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 165 CG ASN A 165 OD1 0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 82 113.99 -27.00 REMARK 500 VAL A 95 -161.79 -118.46 REMARK 500 ASN A 165 85.57 33.83 REMARK 500 ALA A 176 -45.96 -163.18 REMARK 500 TYR B 0 113.89 -170.87 REMARK 500 ALA B 1 -43.29 -156.49 REMARK 500 GLU B 82 113.43 -24.31 REMARK 500 VAL B 95 -158.97 -116.03 REMARK 500 GLU B 122 153.49 178.65 REMARK 500 ASN B 125 54.97 -150.20 REMARK 500 LYS B 160 147.83 -31.31 REMARK 500 ALA B 176 -43.67 -164.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 142 GLU A 143 148.91 REMARK 500 LYS B 144 LEU B 145 147.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 5O9I A 2 128 UNP C9REA0 C9REA0_METVM 94 220 DBREF 5O9I A 134 190 UNP C9REA0 C9REA0_METVM 371 427 DBREF 5O9I B 2 128 UNP C9REA0 C9REA0_METVM 94 220 DBREF 5O9I B 134 190 UNP C9REA0 C9REA0_METVM 371 427 SEQADV 5O9I SER A -3 UNP C9REA0 EXPRESSION TAG SEQADV 5O9I GLY A -2 UNP C9REA0 EXPRESSION TAG SEQADV 5O9I GLY A -1 UNP C9REA0 EXPRESSION TAG SEQADV 5O9I TYR A 0 UNP C9REA0 EXPRESSION TAG SEQADV 5O9I ALA A 1 UNP C9REA0 EXPRESSION TAG SEQADV 5O9I ASN A 129 UNP C9REA0 LINKER SEQADV 5O9I ARG A 130 UNP C9REA0 LINKER SEQADV 5O9I LYS A 131 UNP C9REA0 LINKER SEQADV 5O9I LEU A 132 UNP C9REA0 LINKER SEQADV 5O9I GLU A 133 UNP C9REA0 LINKER SEQADV 5O9I GLU A 137 UNP C9REA0 TYR 374 CONFLICT SEQADV 5O9I GLU A 138 UNP C9REA0 ASN 375 CONFLICT SEQADV 5O9I ALA A 191 UNP C9REA0 EXPRESSION TAG SEQADV 5O9I SER B -3 UNP C9REA0 EXPRESSION TAG SEQADV 5O9I GLY B -2 UNP C9REA0 EXPRESSION TAG SEQADV 5O9I GLY B -1 UNP C9REA0 EXPRESSION TAG SEQADV 5O9I TYR B 0 UNP C9REA0 EXPRESSION TAG SEQADV 5O9I ALA B 1 UNP C9REA0 EXPRESSION TAG SEQADV 5O9I ASN B 129 UNP C9REA0 LINKER SEQADV 5O9I ARG B 130 UNP C9REA0 LINKER SEQADV 5O9I LYS B 131 UNP C9REA0 LINKER SEQADV 5O9I LEU B 132 UNP C9REA0 LINKER SEQADV 5O9I GLU B 133 UNP C9REA0 LINKER SEQADV 5O9I GLU B 137 UNP C9REA0 TYR 374 CONFLICT SEQADV 5O9I GLU B 138 UNP C9REA0 ASN 375 CONFLICT SEQADV 5O9I ALA B 191 UNP C9REA0 EXPRESSION TAG SEQRES 1 A 195 SER GLY GLY TYR ALA VAL ASP TYR SER GLU PRO ILE ILE SEQRES 2 A 195 ILE LYS GLU LYS GLY GLU ILE LYS VAL VAL LYS ILE GLY SEQRES 3 A 195 GLU LEU ILE ASP GLU ILE ILE LYS ASN SER LYS ASN VAL SEQRES 4 A 195 ARG LYS ASP GLY ILE LEU GLU ILE ALA ARG CYS LYS ASP SEQRES 5 A 195 VAL GLU VAL ILE ALA PHE ASP SER ASN TYR LYS PHE LYS SEQRES 6 A 195 PHE MET PRO VAL SER GLU VAL SER ARG HIS PRO VAL SER SEQRES 7 A 195 GLU MET PHE GLU ILE VAL VAL GLU GLY ASN LYS LYS VAL SEQRES 8 A 195 ARG VAL THR GLY SER HIS SER VAL PHE THR VAL LYS ASP SEQRES 9 A 195 ASN GLU VAL VAL PRO ILE ARG VAL ASP ASP LEU ARG VAL SEQRES 10 A 195 GLY ASP ILE LEU VAL LEU ALA LYS GLU LEU PRO ASN ILE SEQRES 11 A 195 GLU GLU ASN ARG LYS LEU GLU PRO ASN ILE GLU GLU ASN SEQRES 12 A 195 ARG LYS LEU GLU LYS LEU ILE ASN SER ASP PHE ILE PHE SEQRES 13 A 195 LEU LYS ILE LYS LYS ILE ASN LYS VAL GLU PRO THR ASN SEQRES 14 A 195 GLY TYR ALA TYR ASP LEU THR VAL PRO ASN ALA GLU ASN SEQRES 15 A 195 PHE ILE ALA GLY PHE GLY GLY PHE VAL LEU HIS ASN ALA SEQRES 1 B 195 SER GLY GLY TYR ALA VAL ASP TYR SER GLU PRO ILE ILE SEQRES 2 B 195 ILE LYS GLU LYS GLY GLU ILE LYS VAL VAL LYS ILE GLY SEQRES 3 B 195 GLU LEU ILE ASP GLU ILE ILE LYS ASN SER LYS ASN VAL SEQRES 4 B 195 ARG LYS ASP GLY ILE LEU GLU ILE ALA ARG CYS LYS ASP SEQRES 5 B 195 VAL GLU VAL ILE ALA PHE ASP SER ASN TYR LYS PHE LYS SEQRES 6 B 195 PHE MET PRO VAL SER GLU VAL SER ARG HIS PRO VAL SER SEQRES 7 B 195 GLU MET PHE GLU ILE VAL VAL GLU GLY ASN LYS LYS VAL SEQRES 8 B 195 ARG VAL THR GLY SER HIS SER VAL PHE THR VAL LYS ASP SEQRES 9 B 195 ASN GLU VAL VAL PRO ILE ARG VAL ASP ASP LEU ARG VAL SEQRES 10 B 195 GLY ASP ILE LEU VAL LEU ALA LYS GLU LEU PRO ASN ILE SEQRES 11 B 195 GLU GLU ASN ARG LYS LEU GLU PRO ASN ILE GLU GLU ASN SEQRES 12 B 195 ARG LYS LEU GLU LYS LEU ILE ASN SER ASP PHE ILE PHE SEQRES 13 B 195 LEU LYS ILE LYS LYS ILE ASN LYS VAL GLU PRO THR ASN SEQRES 14 B 195 GLY TYR ALA TYR ASP LEU THR VAL PRO ASN ALA GLU ASN SEQRES 15 B 195 PHE ILE ALA GLY PHE GLY GLY PHE VAL LEU HIS ASN ALA FORMUL 3 HOH *16(H2 O) HELIX 1 AA1 ILE A 21 ASN A 31 1 11 HELIX 2 AA2 GLU A 143 ASN A 147 1 5 HELIX 3 AA3 ILE B 21 ASN B 31 1 11 SHEET 1 AA1 4 VAL A 2 ASP A 3 0 SHEET 2 AA1 4 TYR A 167 THR A 172 -1 O TYR A 169 N VAL A 2 SHEET 3 AA1 4 GLU A 67 PRO A 72 -1 N HIS A 71 O ALA A 168 SHEET 4 AA1 4 GLU A 42 ARG A 45 -1 N ALA A 44 O VAL A 68 SHEET 1 AA2 4 GLU A 15 LYS A 20 0 SHEET 2 AA2 4 PRO A 7 GLU A 12 -1 N ILE A 10 O LYS A 17 SHEET 3 AA2 4 VAL A 49 PHE A 54 -1 O GLU A 50 N LYS A 11 SHEET 4 AA2 4 PHE A 60 PRO A 64 -1 O MET A 63 N VAL A 51 SHEET 1 AA3 4 LYS A 85 VAL A 89 0 SHEET 2 AA3 4 PHE A 77 VAL A 81 -1 N PHE A 77 O VAL A 89 SHEET 3 AA3 4 PHE A 150 ILE A 158 -1 O LYS A 156 N VAL A 80 SHEET 4 AA3 4 ILE A 116 ALA A 120 -1 N LEU A 117 O LEU A 153 SHEET 1 AA4 2 SER A 94 LYS A 99 0 SHEET 2 AA4 2 GLU A 102 ARG A 107 -1 O VAL A 104 N THR A 97 SHEET 1 AA5 2 ASN A 178 ALA A 181 0 SHEET 2 AA5 2 PHE A 186 HIS A 189 -1 O LEU A 188 N PHE A 179 SHEET 1 AA6 5 VAL B 2 ASP B 3 0 SHEET 2 AA6 5 ALA B 168 THR B 172 -1 O TYR B 169 N VAL B 2 SHEET 3 AA6 5 GLU B 67 HIS B 71 -1 N HIS B 71 O ALA B 168 SHEET 4 AA6 5 LEU B 41 ARG B 45 -1 N ALA B 44 O VAL B 68 SHEET 5 AA6 5 ARG B 36 ASP B 38 -1 N ARG B 36 O ILE B 43 SHEET 1 AA7 4 GLU B 15 LYS B 20 0 SHEET 2 AA7 4 PRO B 7 GLU B 12 -1 N ILE B 10 O LYS B 17 SHEET 3 AA7 4 VAL B 49 PHE B 54 -1 O GLU B 50 N LYS B 11 SHEET 4 AA7 4 PHE B 60 PRO B 64 -1 O MET B 63 N VAL B 51 SHEET 1 AA8 4 LYS B 85 VAL B 89 0 SHEET 2 AA8 4 PHE B 77 VAL B 81 -1 N PHE B 77 O VAL B 89 SHEET 3 AA8 4 PHE B 150 ILE B 158 -1 O LYS B 156 N VAL B 80 SHEET 4 AA8 4 ILE B 116 ALA B 120 -1 N LEU B 117 O LEU B 153 SHEET 1 AA9 2 SER B 94 LYS B 99 0 SHEET 2 AA9 2 GLU B 102 ARG B 107 -1 O VAL B 104 N THR B 97 SHEET 1 AB1 2 ASN B 178 ALA B 181 0 SHEET 2 AB1 2 PHE B 186 HIS B 189 -1 O LEU B 188 N PHE B 179 CRYST1 108.183 67.245 51.226 90.00 102.43 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009244 0.000000 0.002037 0.00000 SCALE2 0.000000 0.014871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019990 0.00000