HEADER HYDROLASE 22-JUN-17 5OAG OBSLTE 13-DEC-17 5OAG 6F6P TITLE CRYSTAL STRUCTURE OF TETRAMERIC HUMAN RABIN8 GEF DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAB-3A-INTERACTING PROTEIN; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: RAB3A-INTERACTING PROTEIN,RABIN-3,SSX2-INTERACTING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RAB-3A-INTERACTING PROTEIN; COMPND 8 CHAIN: B, C; COMPND 9 SYNONYM: RAB3A-INTERACTING PROTEIN,RABIN-3,SSX2-INTERACTING PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB3IP, RABIN8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: RAB3IP, RABIN8; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RABIN8, GEF, GUANINE NUCLEOTIDE EXCHANGE FACTOR, TETRAMER, RAB3I, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.LORENTZEN,M.VETTER REVDAT 2 13-DEC-17 5OAG 1 OBSLTE REVDAT 1 12-JUL-17 5OAG 0 JRNL AUTH M.VETTER,S.BHOGARAJU,E.LORENTZEN JRNL TITL RABIN8 EQUILIBRIUM BETWEEN ACTIVE DIMERS AND INACTIVE JRNL TITL 2 TETRAMERS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1647 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 18049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7241 - 4.5111 0.99 3035 160 0.2209 0.2791 REMARK 3 2 4.5111 - 3.5811 1.00 2921 154 0.1863 0.2769 REMARK 3 3 3.5811 - 3.1285 1.00 2886 152 0.2580 0.3153 REMARK 3 4 3.1285 - 2.8425 0.99 2850 151 0.2710 0.3731 REMARK 3 5 2.8425 - 2.6388 0.99 2811 147 0.2840 0.3592 REMARK 3 6 2.6388 - 2.4833 0.93 2645 137 0.3044 0.3400 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3019 REMARK 3 ANGLE : 1.464 4041 REMARK 3 CHIRALITY : 0.057 475 REMARK 3 PLANARITY : 0.008 530 REMARK 3 DIHEDRAL : 18.298 1201 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 148:158) REMARK 3 ORIGIN FOR THE GROUP (A): 55.6352 5.4642 80.1601 REMARK 3 T TENSOR REMARK 3 T11: 0.9246 T22: 0.8015 REMARK 3 T33: 1.3156 T12: 0.2636 REMARK 3 T13: 0.1918 T23: 0.2293 REMARK 3 L TENSOR REMARK 3 L11: 2.0706 L22: 5.7958 REMARK 3 L33: 0.2054 L12: -1.6363 REMARK 3 L13: -0.5699 L23: 0.6731 REMARK 3 S TENSOR REMARK 3 S11: -1.6177 S12: -2.1889 S13: -3.0121 REMARK 3 S21: 1.7604 S22: 1.8119 S23: 3.1442 REMARK 3 S31: 0.3086 S32: 0.3427 S33: -0.0340 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 159:181) REMARK 3 ORIGIN FOR THE GROUP (A): 55.1113 29.8841 74.2531 REMARK 3 T TENSOR REMARK 3 T11: 0.8362 T22: 0.5107 REMARK 3 T33: 0.7213 T12: 0.0583 REMARK 3 T13: 0.0804 T23: 0.1410 REMARK 3 L TENSOR REMARK 3 L11: 3.5929 L22: 2.3792 REMARK 3 L33: 4.2173 L12: -3.1441 REMARK 3 L13: 1.5554 L23: -3.0452 REMARK 3 S TENSOR REMARK 3 S11: -0.3320 S12: -0.3113 S13: 0.8983 REMARK 3 S21: 1.1350 S22: 0.6884 S23: -0.5719 REMARK 3 S31: -1.1903 S32: -0.0540 S33: -0.4918 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 182:221) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1254 73.2242 60.0273 REMARK 3 T TENSOR REMARK 3 T11: 0.5104 T22: 0.5087 REMARK 3 T33: 0.5969 T12: 0.0799 REMARK 3 T13: 0.0353 T23: 0.0953 REMARK 3 L TENSOR REMARK 3 L11: 2.3656 L22: 6.3954 REMARK 3 L33: 6.0130 L12: -3.1431 REMARK 3 L13: 0.7641 L23: -5.1777 REMARK 3 S TENSOR REMARK 3 S11: -0.6270 S12: -0.2189 S13: 0.1497 REMARK 3 S21: 2.8271 S22: 0.8363 S23: -0.3653 REMARK 3 S31: -1.3982 S32: -0.6771 S33: -0.3512 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 222:245) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7130 115.9993 38.7134 REMARK 3 T TENSOR REMARK 3 T11: 1.1565 T22: 0.4707 REMARK 3 T33: 0.8570 T12: 0.0419 REMARK 3 T13: 0.2139 T23: 0.1483 REMARK 3 L TENSOR REMARK 3 L11: 6.6555 L22: 2.1443 REMARK 3 L33: 4.6443 L12: -2.9914 REMARK 3 L13: 0.7958 L23: -0.5787 REMARK 3 S TENSOR REMARK 3 S11: -0.4961 S12: 0.4774 S13: 1.2491 REMARK 3 S21: 1.6949 S22: 0.1127 S23: -2.0647 REMARK 3 S31: -2.0862 S32: 0.0948 S33: 0.1353 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 149:174) REMARK 3 ORIGIN FOR THE GROUP (A): 56.4162 59.8557 58.2936 REMARK 3 T TENSOR REMARK 3 T11: 0.6279 T22: 0.4692 REMARK 3 T33: 0.5914 T12: -0.0294 REMARK 3 T13: 0.1113 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 4.8602 L22: 3.7300 REMARK 3 L33: 1.7590 L12: 2.5159 REMARK 3 L13: -0.3765 L23: -2.2180 REMARK 3 S TENSOR REMARK 3 S11: -0.5698 S12: 0.1724 S13: 0.2631 REMARK 3 S21: -1.6557 S22: 0.3044 S23: -1.3576 REMARK 3 S31: 0.1269 S32: 0.3085 S33: 0.1863 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 175:198) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4813 24.8401 66.9942 REMARK 3 T TENSOR REMARK 3 T11: 0.5435 T22: 0.5186 REMARK 3 T33: 0.6352 T12: 0.0981 REMARK 3 T13: -0.0315 T23: 0.1404 REMARK 3 L TENSOR REMARK 3 L11: 4.1329 L22: 2.0466 REMARK 3 L33: 6.4315 L12: 2.1936 REMARK 3 L13: -3.7099 L23: -3.0724 REMARK 3 S TENSOR REMARK 3 S11: -0.2553 S12: 0.6197 S13: 1.1446 REMARK 3 S21: -1.6879 S22: 1.0662 S23: 0.1647 REMARK 3 S31: 0.0079 S32: -0.4964 S33: -0.7617 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 199:230) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5251 -11.8620 85.5104 REMARK 3 T TENSOR REMARK 3 T11: 0.5985 T22: 0.4927 REMARK 3 T33: 0.4749 T12: -0.1110 REMARK 3 T13: -0.1391 T23: 0.1202 REMARK 3 L TENSOR REMARK 3 L11: 2.1872 L22: 4.1434 REMARK 3 L33: 8.7168 L12: 2.6089 REMARK 3 L13: -3.2743 L23: -6.3615 REMARK 3 S TENSOR REMARK 3 S11: -0.2140 S12: 0.2962 S13: 0.2202 REMARK 3 S21: -1.5134 S22: 1.1818 S23: 1.2910 REMARK 3 S31: 1.0982 S32: -0.7378 S33: -1.0405 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 231:245) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7150 -42.2149 104.5625 REMARK 3 T TENSOR REMARK 3 T11: 0.6099 T22: 0.4806 REMARK 3 T33: 0.5377 T12: -0.1037 REMARK 3 T13: -0.1674 T23: 0.0839 REMARK 3 L TENSOR REMARK 3 L11: 2.3393 L22: 5.3400 REMARK 3 L33: 1.8362 L12: -1.0405 REMARK 3 L13: 0.3190 L23: -1.1821 REMARK 3 S TENSOR REMARK 3 S11: 0.2349 S12: 0.3270 S13: -0.3659 REMARK 3 S21: 0.4163 S22: -0.1425 S23: -0.1659 REMARK 3 S31: -0.0441 S32: 0.0061 S33: -0.2187 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN C AND RESID 155:177) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8222 22.6263 73.9771 REMARK 3 T TENSOR REMARK 3 T11: 0.5059 T22: 0.4633 REMARK 3 T33: 0.7588 T12: 0.1280 REMARK 3 T13: 0.0926 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 6.2349 L22: 4.8710 REMARK 3 L33: 5.8959 L12: -0.7900 REMARK 3 L13: 4.1403 L23: -4.3414 REMARK 3 S TENSOR REMARK 3 S11: 0.4043 S12: 0.2328 S13: -0.0305 REMARK 3 S21: 0.4900 S22: 0.1479 S23: 1.5007 REMARK 3 S31: 0.2571 S32: 0.0936 S33: -0.3302 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN C AND RESID 178:203) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5811 53.7081 55.8749 REMARK 3 T TENSOR REMARK 3 T11: 0.9343 T22: 0.4778 REMARK 3 T33: 0.7760 T12: -0.1703 REMARK 3 T13: -0.0182 T23: 0.0764 REMARK 3 L TENSOR REMARK 3 L11: 6.5341 L22: 4.9807 REMARK 3 L33: 3.2711 L12: 4.4113 REMARK 3 L13: -3.6468 L23: -5.8700 REMARK 3 S TENSOR REMARK 3 S11: -0.7692 S12: 0.3952 S13: -1.4278 REMARK 3 S21: -1.9486 S22: 0.0218 S23: -1.5019 REMARK 3 S31: 0.3671 S32: -0.2491 S33: 0.7777 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN C AND RESID 204:235) REMARK 3 ORIGIN FOR THE GROUP (A): 47.2872 94.6921 44.0572 REMARK 3 T TENSOR REMARK 3 T11: 0.5572 T22: 0.3950 REMARK 3 T33: 0.7430 T12: 0.0079 REMARK 3 T13: 0.1349 T23: 0.0888 REMARK 3 L TENSOR REMARK 3 L11: 6.2862 L22: 3.5494 REMARK 3 L33: 5.8924 L12: 0.3238 REMARK 3 L13: 1.4401 L23: -4.9570 REMARK 3 S TENSOR REMARK 3 S11: -0.1348 S12: 0.2397 S13: 1.2739 REMARK 3 S21: -0.9592 S22: -0.4483 S23: -0.8395 REMARK 3 S31: 0.0486 S32: 0.0532 S33: 0.4999 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN C AND RESID 236:243) REMARK 3 ORIGIN FOR THE GROUP (A): 49.2291 125.3770 39.3533 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: 1.4126 REMARK 3 T33: 3.8466 T12: -0.8078 REMARK 3 T13: -0.7682 T23: 1.1005 REMARK 3 L TENSOR REMARK 3 L11: 0.9016 L22: 0.2023 REMARK 3 L33: 0.7507 L12: 0.2419 REMARK 3 L13: -0.8209 L23: -0.2688 REMARK 3 S TENSOR REMARK 3 S11: -0.8340 S12: -0.0860 S13: -0.1700 REMARK 3 S21: 0.0166 S22: 0.1265 S23: -0.4060 REMARK 3 S31: 0.0358 S32: -0.5224 S33: -0.2638 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN D AND RESID 149:168) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2801 62.6402 57.0378 REMARK 3 T TENSOR REMARK 3 T11: 0.9716 T22: 0.5078 REMARK 3 T33: 0.8867 T12: 0.0237 REMARK 3 T13: -0.1037 T23: 0.0952 REMARK 3 L TENSOR REMARK 3 L11: 7.0806 L22: 3.7628 REMARK 3 L33: 3.9318 L12: -3.7288 REMARK 3 L13: 3.4464 L23: 0.3792 REMARK 3 S TENSOR REMARK 3 S11: -0.2323 S12: 0.3923 S13: 0.3520 REMARK 3 S21: -0.0805 S22: 0.4520 S23: 1.1245 REMARK 3 S31: -1.8853 S32: -0.8317 S33: -0.5357 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN D AND RESID 169:203) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0466 30.2200 78.0373 REMARK 3 T TENSOR REMARK 3 T11: 0.5839 T22: 0.4236 REMARK 3 T33: 0.7531 T12: 0.0089 REMARK 3 T13: -0.0599 T23: 0.0627 REMARK 3 L TENSOR REMARK 3 L11: 2.3448 L22: 4.4503 REMARK 3 L33: 2.8675 L12: -2.7001 REMARK 3 L13: 1.3241 L23: -2.1223 REMARK 3 S TENSOR REMARK 3 S11: -0.6518 S12: 0.0856 S13: 0.9394 REMARK 3 S21: 2.3585 S22: 0.2098 S23: -0.8700 REMARK 3 S31: -0.8955 S32: -0.1520 S33: 0.4434 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN D AND RESID 204:229) REMARK 3 ORIGIN FOR THE GROUP (A): 48.8736 -12.5859 92.7171 REMARK 3 T TENSOR REMARK 3 T11: 0.6112 T22: 0.5107 REMARK 3 T33: 0.2873 T12: 0.0346 REMARK 3 T13: -0.0806 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 6.4036 L22: 3.4848 REMARK 3 L33: 3.5029 L12: -1.2612 REMARK 3 L13: 0.4854 L23: -3.7972 REMARK 3 S TENSOR REMARK 3 S11: 0.0690 S12: -0.7797 S13: -0.3190 REMARK 3 S21: 0.8842 S22: 0.3111 S23: -0.3087 REMARK 3 S31: -0.1257 S32: -0.3466 S33: -0.2767 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN D AND RESID 230:245) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7549 -43.1482 98.8783 REMARK 3 T TENSOR REMARK 3 T11: 1.0777 T22: 0.5411 REMARK 3 T33: 0.5787 T12: 0.0821 REMARK 3 T13: 0.0287 T23: 0.1671 REMARK 3 L TENSOR REMARK 3 L11: 8.8725 L22: 2.1427 REMARK 3 L33: 2.5207 L12: 1.9843 REMARK 3 L13: -0.1169 L23: -1.9382 REMARK 3 S TENSOR REMARK 3 S11: -0.3035 S12: 0.4242 S13: -0.8030 REMARK 3 S21: -2.6560 S22: -0.5263 S23: -2.1349 REMARK 3 S31: 0.7536 S32: 0.0766 S33: 1.1246 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OAG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18136 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 1.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS PH 7.3 AND 40% MPD, REMARK 280 EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 140 REMARK 465 ALA A 141 REMARK 465 ALA A 142 REMARK 465 SER A 143 REMARK 465 ARG A 144 REMARK 465 LEU A 145 REMARK 465 ARG A 146 REMARK 465 SER A 147 REMARK 465 GLY B 140 REMARK 465 ALA B 141 REMARK 465 SER B 142 REMARK 465 SER B 143 REMARK 465 ARG B 144 REMARK 465 LEU B 145 REMARK 465 ARG B 146 REMARK 465 SER B 147 REMARK 465 PRO B 148 REMARK 465 GLY C 140 REMARK 465 ALA C 141 REMARK 465 SER C 142 REMARK 465 SER C 143 REMARK 465 ARG C 144 REMARK 465 LEU C 145 REMARK 465 ARG C 146 REMARK 465 SER C 147 REMARK 465 PRO C 148 REMARK 465 SER C 149 REMARK 465 VAL C 150 REMARK 465 LEU C 151 REMARK 465 GLU C 152 REMARK 465 VAL C 153 REMARK 465 ARG C 154 REMARK 465 LEU C 244 REMARK 465 SER C 245 REMARK 465 GLY D 141 REMARK 465 ALA D 142 REMARK 465 ALA D 143 REMARK 465 SER D 144 REMARK 465 ARG D 145 REMARK 465 LEU D 146 REMARK 465 ARG D 147 REMARK 465 SER D 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 LYS B 220 CG CD CE NZ REMARK 470 LYS B 223 CG CD CE NZ REMARK 470 LYS C 156 CG CD CE NZ REMARK 470 LYS C 223 CG CD CE NZ REMARK 470 SER D 150 OG REMARK 470 LEU D 152 CG CD1 CD2 REMARK 470 GLU D 153 CG CD OE1 OE2 REMARK 470 ARG D 155 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 157 CG CD CE NZ REMARK 470 GLU D 211 CG CD OE1 OE2 REMARK 470 LYS D 221 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 306 O HOH B 328 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 340 O HOH D 324 3746 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 239 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 LEU C 239 CA - CB - CG ANGL. DEV. = -19.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 149 170.82 61.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 329 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 345 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B 346 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH C 333 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH D 325 DISTANCE = 7.36 ANGSTROMS DBREF 5OAG A 143 245 UNP Q96QF0 RAB3I_HUMAN 159 261 DBREF 5OAG B 143 245 UNP Q96QF0 RAB3I_HUMAN 159 261 DBREF 5OAG C 143 245 UNP Q96QF0 RAB3I_HUMAN 159 261 DBREF 5OAG D 144 246 UNP Q96QF0 RAB3I_HUMAN 159 261 SEQADV 5OAG GLY A 140 UNP Q96QF0 EXPRESSION TAG SEQADV 5OAG ALA A 141 UNP Q96QF0 EXPRESSION TAG SEQADV 5OAG ALA A 142 UNP Q96QF0 EXPRESSION TAG SEQADV 5OAG GLY B 140 UNP Q96QF0 EXPRESSION TAG SEQADV 5OAG ALA B 141 UNP Q96QF0 EXPRESSION TAG SEQADV 5OAG SER B 142 UNP Q96QF0 EXPRESSION TAG SEQADV 5OAG GLY C 140 UNP Q96QF0 EXPRESSION TAG SEQADV 5OAG ALA C 141 UNP Q96QF0 EXPRESSION TAG SEQADV 5OAG SER C 142 UNP Q96QF0 EXPRESSION TAG SEQADV 5OAG GLY D 141 UNP Q96QF0 EXPRESSION TAG SEQADV 5OAG ALA D 142 UNP Q96QF0 EXPRESSION TAG SEQADV 5OAG ALA D 143 UNP Q96QF0 EXPRESSION TAG SEQRES 1 A 106 GLY ALA ALA SER ARG LEU ARG SER PRO SER VAL LEU GLU SEQRES 2 A 106 VAL ARG GLU LYS GLY TYR GLU ARG LEU LYS GLU GLU LEU SEQRES 3 A 106 ALA LYS ALA GLN ARG GLU LEU LYS LEU LYS ASP GLU GLU SEQRES 4 A 106 CYS GLU ARG LEU SER LYS VAL ARG ASP GLN LEU GLY GLN SEQRES 5 A 106 GLU LEU GLU GLU LEU THR ALA SER LEU PHE GLU GLU ALA SEQRES 6 A 106 HIS LYS MET VAL ARG GLU ALA ASN ILE LYS GLN ALA THR SEQRES 7 A 106 ALA GLU LYS GLN LEU LYS GLU ALA GLN GLY LYS ILE ASP SEQRES 8 A 106 VAL LEU GLN ALA GLU VAL ALA ALA LEU LYS THR LEU VAL SEQRES 9 A 106 LEU SER SEQRES 1 B 106 GLY ALA SER SER ARG LEU ARG SER PRO SER VAL LEU GLU SEQRES 2 B 106 VAL ARG GLU LYS GLY TYR GLU ARG LEU LYS GLU GLU LEU SEQRES 3 B 106 ALA LYS ALA GLN ARG GLU LEU LYS LEU LYS ASP GLU GLU SEQRES 4 B 106 CYS GLU ARG LEU SER LYS VAL ARG ASP GLN LEU GLY GLN SEQRES 5 B 106 GLU LEU GLU GLU LEU THR ALA SER LEU PHE GLU GLU ALA SEQRES 6 B 106 HIS LYS MET VAL ARG GLU ALA ASN ILE LYS GLN ALA THR SEQRES 7 B 106 ALA GLU LYS GLN LEU LYS GLU ALA GLN GLY LYS ILE ASP SEQRES 8 B 106 VAL LEU GLN ALA GLU VAL ALA ALA LEU LYS THR LEU VAL SEQRES 9 B 106 LEU SER SEQRES 1 C 106 GLY ALA SER SER ARG LEU ARG SER PRO SER VAL LEU GLU SEQRES 2 C 106 VAL ARG GLU LYS GLY TYR GLU ARG LEU LYS GLU GLU LEU SEQRES 3 C 106 ALA LYS ALA GLN ARG GLU LEU LYS LEU LYS ASP GLU GLU SEQRES 4 C 106 CYS GLU ARG LEU SER LYS VAL ARG ASP GLN LEU GLY GLN SEQRES 5 C 106 GLU LEU GLU GLU LEU THR ALA SER LEU PHE GLU GLU ALA SEQRES 6 C 106 HIS LYS MET VAL ARG GLU ALA ASN ILE LYS GLN ALA THR SEQRES 7 C 106 ALA GLU LYS GLN LEU LYS GLU ALA GLN GLY LYS ILE ASP SEQRES 8 C 106 VAL LEU GLN ALA GLU VAL ALA ALA LEU LYS THR LEU VAL SEQRES 9 C 106 LEU SER SEQRES 1 D 106 GLY ALA ALA SER ARG LEU ARG SER PRO SER VAL LEU GLU SEQRES 2 D 106 VAL ARG GLU LYS GLY TYR GLU ARG LEU LYS GLU GLU LEU SEQRES 3 D 106 ALA LYS ALA GLN ARG GLU LEU LYS LEU LYS ASP GLU GLU SEQRES 4 D 106 CYS GLU ARG LEU SER LYS VAL ARG ASP GLN LEU GLY GLN SEQRES 5 D 106 GLU LEU GLU GLU LEU THR ALA SER LEU PHE GLU GLU ALA SEQRES 6 D 106 HIS LYS MET VAL ARG GLU ALA ASN ILE LYS GLN ALA THR SEQRES 7 D 106 ALA GLU LYS GLN LEU LYS GLU ALA GLN GLY LYS ILE ASP SEQRES 8 D 106 VAL LEU GLN ALA GLU VAL ALA ALA LEU LYS THR LEU VAL SEQRES 9 D 106 LEU SER FORMUL 5 HOH *133(H2 O) HELIX 1 AA1 PRO A 148 SER A 245 1 98 HELIX 2 AA2 VAL B 150 LEU B 244 1 95 HELIX 3 AA3 LYS C 156 VAL C 243 1 88 HELIX 4 AA4 SER D 150 LEU D 245 1 96 CRYST1 47.300 76.970 137.190 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007289 0.00000