data_5OB4 # _entry.id 5OB4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5OB4 pdb_00005ob4 10.2210/pdb5ob4/pdb WWPDB D_1200005503 ? ? BMRB 34154 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR spatial structure of HER2 TM domain dimer in DPC micelles' _pdbx_database_related.db_id 34154 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5OB4 _pdbx_database_status.recvd_initial_deposition_date 2017-06-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mineev, K.S.' 1 0000-0002-2418-9421 'Arseniev, A.S.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Biomol. NMR' _citation.journal_id_ASTM JBNME9 _citation.journal_id_CSD 0800 _citation.journal_id_ISSN 1573-5001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 69 _citation.language ? _citation.page_first 165 _citation.page_last 179 _citation.title 'NMR relaxation parameters of methyl groups as a tool to map the interfaces of helix-helix interactions in membrane proteins.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1007/s10858-017-0146-1 _citation.pdbx_database_id_PubMed 29063258 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lesovoy, D.M.' 1 ? primary 'Mineev, K.S.' 2 ? primary 'Bragin, P.E.' 3 ? primary 'Bocharova, O.V.' 4 ? primary 'Bocharov, E.V.' 5 ? primary 'Arseniev, A.S.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5OB4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OB4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Receptor tyrosine-protein kinase erbB-2' _entity.formula_weight 4734.805 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec 2.7.10.1 _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 31-74' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Metastatic lymph node gene 19 protein,MLN 19,Proto-oncogene Neu,Proto-oncogene c-ErbB-2,Tyrosine kinase-type cell surface receptor HER2,p185erbB2 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCPAEQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRK _entity_poly.pdbx_seq_one_letter_code_can GCPAEQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRK _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 CYS n 1 3 PRO n 1 4 ALA n 1 5 GLU n 1 6 GLN n 1 7 ARG n 1 8 ALA n 1 9 SER n 1 10 PRO n 1 11 LEU n 1 12 THR n 1 13 SER n 1 14 ILE n 1 15 ILE n 1 16 SER n 1 17 ALA n 1 18 VAL n 1 19 VAL n 1 20 GLY n 1 21 ILE n 1 22 LEU n 1 23 LEU n 1 24 VAL n 1 25 VAL n 1 26 VAL n 1 27 LEU n 1 28 GLY n 1 29 VAL n 1 30 VAL n 1 31 PHE n 1 32 GLY n 1 33 ILE n 1 34 LEU n 1 35 ILE n 1 36 LYS n 1 37 ARG n 1 38 ARG n 1 39 GLN n 1 40 GLN n 1 41 LYS n 1 42 ILE n 1 43 ARG n 1 44 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 44 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ERBB2, HER2, MLN19, NEU, NGL' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ERBB2_HUMAN _struct_ref.pdbx_db_accession P04626 _struct_ref.pdbx_db_isoform P04626-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GCPAEQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRK _struct_ref.pdbx_align_begin 31 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5OB4 A 1 ? 44 ? P04626 31 ? 74 ? 1 44 2 1 5OB4 B 1 ? 44 ? P04626 31 ? 74 ? 101 144 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D HNCA' 1 isotropic 2 1 1 '3D HNCO' 1 isotropic 3 1 1 '3D HCCH-TOCSY' 1 isotropic 4 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 5 1 1 '3D 1H-15N NOESY' 1 isotropic 6 1 1 '3D 13C-filtered NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 313 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 30 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.1 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;2.5 mM [U-100% 13C; U-100% 15N] HER2TM, 2.5 mM HER2TM, 200 mM [U-99% 2H] DPC, 20 mM potassium phosphate, 0.01 % sodium azide, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label s1 _pdbx_nmr_sample_details.type micelle _pdbx_nmr_sample_details.details 'sample in DPC micelles' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 5OB4 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5OB4 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5OB4 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' CYANA 3.97 'Guntert, Mumenthaler and Wuthrich' 2 'chemical shift assignment' CARA 1.8.4 'Keller and Wuthrich' 3 processing TopSpin ? 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5OB4 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5OB4 _struct.title 'NMR spatial structure of HER2 TM domain dimer in DPC micelles.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5OB4 _struct_keywords.text 'PROTEIN ERBB2 HER2 RECEPTOR TYROSINE KINASE MEMBRANE DOMAIN DIMER, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 10 ? GLN A 39 ? PRO A 10 GLN A 39 1 ? 30 HELX_P HELX_P2 AA2 PRO B 10 ? GLN B 39 ? PRO B 110 GLN B 139 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 5OB4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5OB4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 LYS 44 44 44 LYS LYS A . n B 1 1 GLY 1 101 101 GLY GLY B . n B 1 2 CYS 2 102 102 CYS CYS B . n B 1 3 PRO 3 103 103 PRO PRO B . n B 1 4 ALA 4 104 104 ALA ALA B . n B 1 5 GLU 5 105 105 GLU GLU B . n B 1 6 GLN 6 106 106 GLN GLN B . n B 1 7 ARG 7 107 107 ARG ARG B . n B 1 8 ALA 8 108 108 ALA ALA B . n B 1 9 SER 9 109 109 SER SER B . n B 1 10 PRO 10 110 110 PRO PRO B . n B 1 11 LEU 11 111 111 LEU LEU B . n B 1 12 THR 12 112 112 THR THR B . n B 1 13 SER 13 113 113 SER SER B . n B 1 14 ILE 14 114 114 ILE ILE B . n B 1 15 ILE 15 115 115 ILE ILE B . n B 1 16 SER 16 116 116 SER SER B . n B 1 17 ALA 17 117 117 ALA ALA B . n B 1 18 VAL 18 118 118 VAL VAL B . n B 1 19 VAL 19 119 119 VAL VAL B . n B 1 20 GLY 20 120 120 GLY GLY B . n B 1 21 ILE 21 121 121 ILE ILE B . n B 1 22 LEU 22 122 122 LEU LEU B . n B 1 23 LEU 23 123 123 LEU LEU B . n B 1 24 VAL 24 124 124 VAL VAL B . n B 1 25 VAL 25 125 125 VAL VAL B . n B 1 26 VAL 26 126 126 VAL VAL B . n B 1 27 LEU 27 127 127 LEU LEU B . n B 1 28 GLY 28 128 128 GLY GLY B . n B 1 29 VAL 29 129 129 VAL VAL B . n B 1 30 VAL 30 130 130 VAL VAL B . n B 1 31 PHE 31 131 131 PHE PHE B . n B 1 32 GLY 32 132 132 GLY GLY B . n B 1 33 ILE 33 133 133 ILE ILE B . n B 1 34 LEU 34 134 134 LEU LEU B . n B 1 35 ILE 35 135 135 ILE ILE B . n B 1 36 LYS 36 136 136 LYS LYS B . n B 1 37 ARG 37 137 137 ARG ARG B . n B 1 38 ARG 38 138 138 ARG ARG B . n B 1 39 GLN 39 139 139 GLN GLN B . n B 1 40 GLN 40 140 140 GLN GLN B . n B 1 41 LYS 41 141 141 LYS LYS B . n B 1 42 ILE 42 142 142 ILE ILE B . n B 1 43 ARG 43 143 143 ARG ARG B . n B 1 44 LYS 44 144 144 LYS LYS B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 700 ? 1 MORE -11 ? 1 'SSA (A^2)' 8670 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-11-22 2 'Structure model' 1 1 2017-12-13 3 'Structure model' 1 2 2018-01-17 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' struct 3 4 'Structure model' pdbx_nmr_software 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_database_status 6 5 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_struct.title' 5 4 'Structure model' '_pdbx_nmr_software.name' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' 8 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' 9 5 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 HER2TM_label 2.5 ? mM '[U-100% 13C; U-100% 15N]' 1 HER2TM 2.5 ? mM 'natural abundance' 1 DPC 200 ? mM '[U-99% 2H]' 1 'potassium phosphate' 20 ? mM 'natural abundance' 1 'sodium azide' 0.01 ? % 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 5 ? ? -99.74 43.01 2 1 SER A 9 ? ? -49.34 164.90 3 1 ILE A 42 ? ? 45.91 83.57 4 1 GLU B 105 ? ? -99.52 31.31 5 1 ILE B 142 ? ? -44.09 105.79 6 2 PRO A 3 ? ? -69.76 -172.89 7 2 SER A 9 ? ? -49.62 164.51 8 2 ARG A 43 ? ? -103.30 62.55 9 2 PRO B 103 ? ? -69.72 -171.99 10 2 SER B 109 ? ? -49.90 164.53 11 3 CYS A 2 ? ? -173.80 72.46 12 3 PRO A 3 ? ? -69.81 84.04 13 3 GLU A 5 ? ? -63.08 -177.18 14 3 GLN A 39 ? ? -174.36 138.23 15 3 LYS A 41 ? ? -98.37 31.91 16 3 CYS B 102 ? ? -174.11 72.87 17 3 PRO B 103 ? ? -69.76 83.14 18 3 GLU B 105 ? ? -64.17 -176.62 19 3 GLN B 139 ? ? -172.82 138.07 20 3 LYS B 141 ? ? -96.52 32.92 21 4 GLN A 39 ? ? -55.31 174.74 22 4 GLN B 139 ? ? -55.85 176.42 23 5 ALA A 4 ? ? -46.15 105.51 24 5 ALA B 104 ? ? 45.98 84.87 25 6 PRO A 3 ? ? -69.71 -177.50 26 6 ALA A 4 ? ? -78.56 -167.13 27 6 SER A 9 ? ? -49.39 165.13 28 6 PRO B 103 ? ? -69.79 -174.41 29 6 ALA B 104 ? ? -75.09 -82.38 30 6 SER B 109 ? ? -48.51 165.71 31 6 GLN B 139 ? ? -91.83 43.46 32 7 CYS A 2 ? ? -154.99 68.27 33 7 PRO A 3 ? ? -69.71 -174.06 34 7 GLN A 39 ? ? -57.52 -179.51 35 7 LYS A 41 ? ? -115.84 65.45 36 7 ARG A 43 ? ? -108.01 69.04 37 7 CYS B 102 ? ? -155.02 69.13 38 7 PRO B 103 ? ? -69.75 -175.81 39 7 GLN B 106 ? ? -95.79 37.69 40 7 ARG B 107 ? ? -105.23 -78.67 41 7 SER B 109 ? ? -49.51 164.34 42 7 ARG B 143 ? ? -107.48 70.46 43 8 PRO A 3 ? ? -69.80 78.59 44 8 ARG A 7 ? ? -61.67 -166.00 45 8 PRO B 103 ? ? -69.77 81.86 46 8 GLN B 106 ? ? -99.84 -86.25 47 8 ARG B 107 ? ? -52.22 -76.81 48 8 SER B 109 ? ? -49.56 164.36 49 9 CYS A 2 ? ? -159.03 70.12 50 9 ARG A 7 ? ? -68.67 -165.83 51 9 CYS B 102 ? ? -159.01 72.94 52 9 ARG B 107 ? ? -96.49 -76.49 53 10 SER A 9 ? ? -49.48 164.57 54 10 SER B 109 ? ? -49.53 164.85 55 10 GLN B 139 ? ? -174.84 -179.48 # _pdbx_audit_support.funding_organization 'Russian Science Foundation' _pdbx_audit_support.country 'Russian Federation' _pdbx_audit_support.grant_number 14-14-00573 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details 'Dimer was confirmed by the isotope-filtered NMR spectra and titration experiments' #