HEADER HYDROLASE 29-JUN-17 5OBT TITLE FULLY ACTIVATED A. THALIANA LEGUMAIN ISOFORM GAMMA IN COMPLEX WITH AC- TITLE 2 YVAD-CMK COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR-PROCESSING ENZYME GAMMA-ISOZYME; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CLEAVED N-TERMINUS, UNP RESIDUES 56-283; COMPND 5 SYNONYM: ASPARAGINYL ENDOPEPTIDASE GAMMA-VPE,GAMMA-VPE; COMPND 6 EC: 3.4.22.34; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: RESIDUE D176 IS FOUND TO BE CONVERTED TO SNN; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: VACUOLAR-PROCESSING ENZYME GAMMA-ISOZYME; COMPND 11 CHAIN: E, F; COMPND 12 FRAGMENT: CLEAVED C-TERMINUS, UNP RESIDUES 284-334; COMPND 13 SYNONYM: ASPARAGINYL ENDOPEPTIDASE GAMMA-VPE,GAMMA-VPE; COMPND 14 EC: 3.4.22.34; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: RESIDUE D176 IS FOUND TO BE CONVERTED TO SNN; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: AC-YVAD-CMK; COMPND 19 CHAIN: C, D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT4G32940, F26P21.60; SOURCE 6 EXPRESSION_SYSTEM: LEISHMANIA TARENTOLAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 5689; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 10 ORGANISM_COMMON: THALE CRESS; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 GENE: AT4G32940, F26P21.60; SOURCE 13 EXPRESSION_SYSTEM: LEISHMANIA TARENTOLAE; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 5689; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS LEGUMAIN, ASPARAGINYL ENDOPEPTIDASE, VACUOLAR PROCESSING ENZYME, KEYWDS 2 PEPTIDE CYCLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.F.ZAUNER,E.DALL,H.BRANDSTETTER REVDAT 6 17-JAN-24 5OBT 1 REMARK REVDAT 5 15-NOV-23 5OBT 1 LINK ATOM REVDAT 4 20-JUN-18 5OBT 1 JRNL REVDAT 3 13-JUN-18 5OBT 1 REMARK REVDAT 2 18-APR-18 5OBT 1 JRNL REVDAT 1 11-APR-18 5OBT 0 JRNL AUTH F.B.ZAUNER,B.ELSASSER,E.DALL,C.CABRELE,H.BRANDSTETTER JRNL TITL STRUCTURAL ANALYSES OFARABIDOPSIS THALIANALEGUMAIN GAMMA JRNL TITL 2 REVEAL DIFFERENTIAL RECOGNITION AND PROCESSING OF JRNL TITL 3 PROTEOLYSIS AND LIGATION SUBSTRATES. JRNL REF J. BIOL. CHEM. V. 293 8934 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29628443 JRNL DOI 10.1074/JBC.M117.817031 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 74167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 3606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.5614 - 4.4354 0.90 2675 163 0.1341 0.1478 REMARK 3 2 4.4354 - 3.5238 0.89 2621 130 0.1150 0.1411 REMARK 3 3 3.5238 - 3.0793 0.91 2650 164 0.1347 0.1651 REMARK 3 4 3.0793 - 2.7982 0.93 2704 157 0.1470 0.1961 REMARK 3 5 2.7982 - 2.5979 0.92 2682 116 0.1485 0.1615 REMARK 3 6 2.5979 - 2.4449 0.91 2662 139 0.1420 0.1777 REMARK 3 7 2.4449 - 2.3225 0.94 2760 117 0.1479 0.1552 REMARK 3 8 2.3225 - 2.2215 0.94 2754 134 0.1390 0.1766 REMARK 3 9 2.2215 - 2.1360 0.95 2781 143 0.1415 0.1558 REMARK 3 10 2.1360 - 2.0624 0.94 2734 127 0.1435 0.1737 REMARK 3 11 2.0624 - 1.9979 0.89 2588 124 0.1486 0.1918 REMARK 3 12 1.9979 - 1.9408 0.93 2767 109 0.1485 0.1920 REMARK 3 13 1.9408 - 1.8897 0.94 2706 142 0.1494 0.1775 REMARK 3 14 1.8897 - 1.8437 0.95 2741 163 0.1556 0.1980 REMARK 3 15 1.8437 - 1.8018 0.96 2774 168 0.1593 0.1906 REMARK 3 16 1.8018 - 1.7634 0.95 2762 148 0.1683 0.2111 REMARK 3 17 1.7634 - 1.7282 0.95 2753 158 0.1786 0.2063 REMARK 3 18 1.7282 - 1.6956 0.89 2566 141 0.1916 0.2400 REMARK 3 19 1.6956 - 1.6653 0.92 2688 137 0.1844 0.1905 REMARK 3 20 1.6653 - 1.6371 0.94 2697 163 0.1856 0.2441 REMARK 3 21 1.6371 - 1.6107 0.94 2723 122 0.1908 0.2466 REMARK 3 22 1.6107 - 1.5859 0.95 2798 116 0.1899 0.2278 REMARK 3 23 1.5859 - 1.5626 0.95 2803 114 0.1971 0.2340 REMARK 3 24 1.5626 - 1.5406 0.96 2789 132 0.2126 0.2596 REMARK 3 25 1.5406 - 1.5197 0.96 2812 141 0.2171 0.2308 REMARK 3 26 1.5197 - 1.5000 0.91 2571 138 0.2376 0.2626 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4648 REMARK 3 ANGLE : 1.134 6329 REMARK 3 CHIRALITY : 0.065 660 REMARK 3 PLANARITY : 0.005 845 REMARK 3 DIHEDRAL : 11.891 1670 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976251 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74201 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 24.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG 4000, 100 MM SODIUM ACETATE PH REMARK 280 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.03500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE ACE-TYR-VAL-ALA-ASP-CHLOROMETHYLKETONE IS PEPTIDE-LIKE, A REMARK 400 MEMBER OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: ACE-TYR-VAL-ALA-ASP-CHLOROMETHYLKETONE REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 39 REMARK 465 ALA A 40 REMARK 465 SER A 41 REMARK 465 LEU A 42 REMARK 465 GLU A 43 REMARK 465 HIS A 44 REMARK 465 HIS A 45 REMARK 465 HIS A 46 REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 HIS A 49 REMARK 465 GLU A 50 REMARK 465 ASN A 51 REMARK 465 LEU A 52 REMARK 465 TYR A 53 REMARK 465 HIS A 282 REMARK 465 ASN A 283 REMARK 465 ASN E 334 REMARK 465 GLY B 39 REMARK 465 ALA B 40 REMARK 465 SER B 41 REMARK 465 LEU B 42 REMARK 465 GLU B 43 REMARK 465 HIS B 44 REMARK 465 HIS B 45 REMARK 465 HIS B 46 REMARK 465 HIS B 47 REMARK 465 HIS B 48 REMARK 465 HIS B 49 REMARK 465 GLU B 50 REMARK 465 ASN B 51 REMARK 465 LEU B 52 REMARK 465 TYR B 53 REMARK 465 ASN F 334 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 516 O HOH B 518 2.02 REMARK 500 O HOH B 381 O HOH B 455 2.08 REMARK 500 O HOH B 426 O HOH B 497 2.11 REMARK 500 O HOH A 602 O HOH A 650 2.11 REMARK 500 O HOH A 525 O HOH A 693 2.15 REMARK 500 O HOH B 369 O HOH B 485 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SNN A 176 CA - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 SNN A 176 O - C - N ANGL. DEV. = 11.9 DEGREES REMARK 500 SNN B 176 O - C - N ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 102 35.25 82.58 REMARK 500 SNN A 176 -146.94 174.63 REMARK 500 THR A 208 44.43 -93.29 REMARK 500 ASN A 242 -169.72 -78.85 REMARK 500 GLU A 262 -3.33 78.05 REMARK 500 TYR E 307 -144.70 50.45 REMARK 500 ASP B 102 35.65 79.28 REMARK 500 SNN B 176 -145.69 172.20 REMARK 500 THR B 208 37.84 -99.75 REMARK 500 MET B 281 44.20 -103.59 REMARK 500 TYR F 305 50.11 -114.85 REMARK 500 TYR F 307 -141.61 51.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 562 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 563 DISTANCE = 5.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0QE C 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 1 and TYR D 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ASP D 5 and 0QE D 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 0QE D 6 and CYS B REMARK 800 219 DBREF 5OBT A 56 283 UNP Q39119 VPEG_ARATH 56 283 DBREF 5OBT E 284 334 UNP Q39119 VPEG_ARATH 284 334 DBREF 5OBT C 1 6 PDB 5OBT 5OBT 1 6 DBREF 5OBT B 56 283 UNP Q39119 VPEG_ARATH 56 283 DBREF 5OBT F 284 334 UNP Q39119 VPEG_ARATH 284 334 DBREF 5OBT D 1 6 PDB 5OBT 5OBT 1 6 SEQADV 5OBT GLY A 39 UNP Q39119 EXPRESSION TAG SEQADV 5OBT ALA A 40 UNP Q39119 EXPRESSION TAG SEQADV 5OBT SER A 41 UNP Q39119 EXPRESSION TAG SEQADV 5OBT LEU A 42 UNP Q39119 EXPRESSION TAG SEQADV 5OBT GLU A 43 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS A 44 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS A 45 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS A 46 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS A 47 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS A 48 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS A 49 UNP Q39119 EXPRESSION TAG SEQADV 5OBT GLU A 50 UNP Q39119 EXPRESSION TAG SEQADV 5OBT ASN A 51 UNP Q39119 EXPRESSION TAG SEQADV 5OBT LEU A 52 UNP Q39119 EXPRESSION TAG SEQADV 5OBT TYR A 53 UNP Q39119 EXPRESSION TAG SEQADV 5OBT PHE A 54 UNP Q39119 EXPRESSION TAG SEQADV 5OBT GLN A 55 UNP Q39119 EXPRESSION TAG SEQADV 5OBT GLY B 39 UNP Q39119 EXPRESSION TAG SEQADV 5OBT ALA B 40 UNP Q39119 EXPRESSION TAG SEQADV 5OBT SER B 41 UNP Q39119 EXPRESSION TAG SEQADV 5OBT LEU B 42 UNP Q39119 EXPRESSION TAG SEQADV 5OBT GLU B 43 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS B 44 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS B 45 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS B 46 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS B 47 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS B 48 UNP Q39119 EXPRESSION TAG SEQADV 5OBT HIS B 49 UNP Q39119 EXPRESSION TAG SEQADV 5OBT GLU B 50 UNP Q39119 EXPRESSION TAG SEQADV 5OBT ASN B 51 UNP Q39119 EXPRESSION TAG SEQADV 5OBT LEU B 52 UNP Q39119 EXPRESSION TAG SEQADV 5OBT TYR B 53 UNP Q39119 EXPRESSION TAG SEQADV 5OBT PHE B 54 UNP Q39119 EXPRESSION TAG SEQADV 5OBT GLN B 55 UNP Q39119 EXPRESSION TAG SEQRES 1 A 245 GLY ALA SER LEU GLU HIS HIS HIS HIS HIS HIS GLU ASN SEQRES 2 A 245 LEU TYR PHE GLN SER GLY THR ARG TRP ALA VAL LEU VAL SEQRES 3 A 245 ALA GLY SER SER GLY TYR TRP ASN TYR ARG HIS GLN ALA SEQRES 4 A 245 ASP ILE CYS HIS ALA TYR GLN LEU LEU ARG LYS GLY GLY SEQRES 5 A 245 LEU LYS GLU GLU ASN ILE VAL VAL PHE MET TYR ASP ASP SEQRES 6 A 245 ILE ALA ASN ASN TYR GLU ASN PRO ARG PRO GLY THR ILE SEQRES 7 A 245 ILE ASN SER PRO HIS GLY LYS ASP VAL TYR GLN GLY VAL SEQRES 8 A 245 PRO LYS ASP TYR THR GLY ASP ASP VAL ASN VAL ASP ASN SEQRES 9 A 245 LEU PHE ALA VAL ILE LEU GLY ASP LYS THR ALA VAL LYS SEQRES 10 A 245 GLY GLY SER GLY LYS VAL VAL ASP SER GLY PRO ASN ASP SEQRES 11 A 245 HIS ILE PHE ILE PHE TYR SER SNN HIS GLY GLY PRO GLY SEQRES 12 A 245 VAL LEU GLY MET PRO THR SER PRO TYR LEU TYR ALA ASN SEQRES 13 A 245 ASP LEU ASN ASP VAL LEU LYS LYS LYS HIS ALA LEU GLY SEQRES 14 A 245 THR TYR LYS SER LEU VAL PHE TYR LEU GLU ALA CYS GLU SEQRES 15 A 245 SER GLY SER ILE PHE GLU GLY LEU LEU PRO GLU GLY LEU SEQRES 16 A 245 ASN ILE TYR ALA THR THR ALA SER ASN ALA GLU GLU SER SEQRES 17 A 245 SER TRP GLY THR TYR CYS PRO GLY GLU GLU PRO SER PRO SEQRES 18 A 245 PRO PRO GLU TYR GLU THR CYS LEU GLY ASP LEU TYR SER SEQRES 19 A 245 VAL ALA TRP MET GLU ASP SER GLY MET HIS ASN SEQRES 1 E 51 LEU GLN THR GLU THR LEU HIS GLN GLN TYR GLU LEU VAL SEQRES 2 E 51 LYS ARG ARG THR ALA PRO VAL GLY TYR SER TYR GLY SER SEQRES 3 E 51 HIS VAL MET GLN TYR GLY ASP VAL GLY ILE SER LYS ASP SEQRES 4 E 51 ASN LEU ASP LEU TYR MET GLY THR ASN PRO ALA ASN SEQRES 1 C 6 ACE TYR VAL ALA ASP 0QE SEQRES 1 B 245 GLY ALA SER LEU GLU HIS HIS HIS HIS HIS HIS GLU ASN SEQRES 2 B 245 LEU TYR PHE GLN SER GLY THR ARG TRP ALA VAL LEU VAL SEQRES 3 B 245 ALA GLY SER SER GLY TYR TRP ASN TYR ARG HIS GLN ALA SEQRES 4 B 245 ASP ILE CYS HIS ALA TYR GLN LEU LEU ARG LYS GLY GLY SEQRES 5 B 245 LEU LYS GLU GLU ASN ILE VAL VAL PHE MET TYR ASP ASP SEQRES 6 B 245 ILE ALA ASN ASN TYR GLU ASN PRO ARG PRO GLY THR ILE SEQRES 7 B 245 ILE ASN SER PRO HIS GLY LYS ASP VAL TYR GLN GLY VAL SEQRES 8 B 245 PRO LYS ASP TYR THR GLY ASP ASP VAL ASN VAL ASP ASN SEQRES 9 B 245 LEU PHE ALA VAL ILE LEU GLY ASP LYS THR ALA VAL LYS SEQRES 10 B 245 GLY GLY SER GLY LYS VAL VAL ASP SER GLY PRO ASN ASP SEQRES 11 B 245 HIS ILE PHE ILE PHE TYR SER SNN HIS GLY GLY PRO GLY SEQRES 12 B 245 VAL LEU GLY MET PRO THR SER PRO TYR LEU TYR ALA ASN SEQRES 13 B 245 ASP LEU ASN ASP VAL LEU LYS LYS LYS HIS ALA LEU GLY SEQRES 14 B 245 THR TYR LYS SER LEU VAL PHE TYR LEU GLU ALA CYS GLU SEQRES 15 B 245 SER GLY SER ILE PHE GLU GLY LEU LEU PRO GLU GLY LEU SEQRES 16 B 245 ASN ILE TYR ALA THR THR ALA SER ASN ALA GLU GLU SER SEQRES 17 B 245 SER TRP GLY THR TYR CYS PRO GLY GLU GLU PRO SER PRO SEQRES 18 B 245 PRO PRO GLU TYR GLU THR CYS LEU GLY ASP LEU TYR SER SEQRES 19 B 245 VAL ALA TRP MET GLU ASP SER GLY MET HIS ASN SEQRES 1 F 51 LEU GLN THR GLU THR LEU HIS GLN GLN TYR GLU LEU VAL SEQRES 2 F 51 LYS ARG ARG THR ALA PRO VAL GLY TYR SER TYR GLY SER SEQRES 3 F 51 HIS VAL MET GLN TYR GLY ASP VAL GLY ILE SER LYS ASP SEQRES 4 F 51 ASN LEU ASP LEU TYR MET GLY THR ASN PRO ALA ASN SEQRES 1 D 6 ACE TYR VAL ALA ASP 0QE MODRES 5OBT SNN A 176 ASP MODIFIED RESIDUE MODRES 5OBT SNN B 176 ASP MODIFIED RESIDUE HET SNN A 176 7 HET ACE C 1 3 HET 0QE C 6 1 HET SNN B 176 7 HET ACE D 1 3 HET 0QE D 6 1 HETNAM SNN L-3-AMINOSUCCINIMIDE HETNAM ACE ACETYL GROUP HETNAM 0QE CHLOROMETHANE HETSYN 0QE CHLORO METHYL GROUP FORMUL 1 SNN 2(C4 H6 N2 O2) FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 0QE 2(C H3 CL) FORMUL 7 HOH *670(H2 O) HELIX 1 AA1 GLY A 69 TRP A 71 5 3 HELIX 2 AA2 ASN A 72 GLY A 89 1 18 HELIX 3 AA3 LYS A 92 GLU A 94 5 3 HELIX 4 AA4 THR A 134 VAL A 138 5 5 HELIX 5 AA5 ASN A 139 GLY A 149 1 11 HELIX 6 AA6 ASP A 150 VAL A 154 5 5 HELIX 7 AA7 ALA A 193 GLY A 207 1 15 HELIX 8 AA8 GLU A 220 PHE A 225 5 6 HELIX 9 AA9 LEU A 270 MET A 281 1 12 HELIX 10 AB1 THR E 288 ALA E 301 1 14 HELIX 11 AB2 VAL E 317 ASN E 323 5 7 HELIX 12 AB3 LEU E 324 GLY E 329 1 6 HELIX 13 AB4 GLY B 69 TRP B 71 5 3 HELIX 14 AB5 ASN B 72 GLY B 89 1 18 HELIX 15 AB6 LYS B 92 GLU B 94 5 3 HELIX 16 AB7 THR B 134 VAL B 138 5 5 HELIX 17 AB8 ASN B 139 GLY B 149 1 11 HELIX 18 AB9 ASP B 150 VAL B 154 5 5 HELIX 19 AC1 ALA B 193 GLY B 207 1 15 HELIX 20 AC2 SER B 221 GLU B 226 1 6 HELIX 21 AC3 LEU B 270 SER B 279 1 10 HELIX 22 AC4 THR F 288 ALA F 301 1 14 HELIX 23 AC5 VAL F 317 ASN F 323 5 7 HELIX 24 AC6 LEU F 324 GLY F 329 1 6 SHEET 1 AA1 6 ILE A 96 PHE A 99 0 SHEET 2 AA1 6 ARG A 59 ALA A 65 1 N LEU A 63 O PHE A 99 SHEET 3 AA1 6 HIS A 169 SER A 175 1 O PHE A 173 N VAL A 64 SHEET 4 AA1 6 SER A 211 LEU A 216 1 O TYR A 215 N ILE A 172 SHEET 5 AA1 6 ILE A 235 THR A 239 1 O TYR A 236 N LEU A 212 SHEET 6 AA1 6 MET E 312 GLY E 315 -1 O TYR E 314 N ALA A 237 SHEET 1 AA2 3 GLY A 178 GLY A 179 0 SHEET 2 AA2 3 VAL A 182 LEU A 183 -1 O VAL A 182 N GLY A 179 SHEET 3 AA2 3 LEU A 191 TYR A 192 -1 O LEU A 191 N LEU A 183 SHEET 1 AA3 2 GLY A 249 THR A 250 0 SHEET 2 AA3 2 GLY A 268 ASP A 269 -1 O GLY A 268 N THR A 250 SHEET 1 AA4 6 ILE B 96 PHE B 99 0 SHEET 2 AA4 6 ARG B 59 ALA B 65 1 N LEU B 63 O PHE B 99 SHEET 3 AA4 6 HIS B 169 SER B 175 1 O HIS B 169 N TRP B 60 SHEET 4 AA4 6 SER B 211 LEU B 216 1 O TYR B 215 N ILE B 172 SHEET 5 AA4 6 ILE B 235 THR B 239 1 O THR B 238 N PHE B 214 SHEET 6 AA4 6 MET F 312 GLY F 315 -1 O TYR F 314 N ALA B 237 SHEET 1 AA5 3 GLY B 178 GLY B 179 0 SHEET 2 AA5 3 VAL B 182 LEU B 183 -1 O VAL B 182 N GLY B 179 SHEET 3 AA5 3 LEU B 191 TYR B 192 -1 O LEU B 191 N LEU B 183 SHEET 1 AA6 2 GLY B 249 THR B 250 0 SHEET 2 AA6 2 GLY B 268 ASP B 269 -1 O GLY B 268 N THR B 250 SSBOND 1 CYS A 252 CYS A 266 1555 1555 2.04 SSBOND 2 CYS B 252 CYS B 266 1555 1555 2.03 LINK C SER A 175 N SNN A 176 1555 1555 1.32 LINK C SNN A 176 N HIS A 177 1555 1555 1.34 LINK C5 SNN A 176 N HIS A 177 1555 1555 1.34 LINK SG CYS A 219 C1 0QE C 6 1555 1555 1.77 LINK C ACE C 1 N TYR C 2 1555 1555 1.33 LINK C ASP C 5 C1 0QE C 6 1555 1555 1.50 LINK C SER B 175 N SNN B 176 1555 1555 1.33 LINK C SNN B 176 N HIS B 177 1555 1555 1.33 LINK C5 SNN B 176 N HIS B 177 1555 1555 1.34 LINK SG CYS B 219 C1 0QE D 6 1555 1555 1.77 LINK C ACE D 1 N TYR D 2 1555 1555 1.33 LINK C ASP D 5 C1 0QE D 6 1555 1555 1.50 CISPEP 1 SER A 188 PRO A 189 0 1.70 CISPEP 2 SER A 188 PRO A 189 0 0.20 CISPEP 3 SER A 188 PRO A 189 0 -1.27 CISPEP 4 GLU A 256 PRO A 257 0 -1.15 CISPEP 5 SER B 188 PRO B 189 0 2.92 CISPEP 6 SER B 188 PRO B 189 0 2.12 CISPEP 7 GLU B 256 PRO B 257 0 -3.23 SITE 1 AC1 4 CYS A 219 TYR F 307 ALA C 4 ASP C 5 SITE 1 AC2 12 HIS A 177 TRP B 248 GLY B 249 CYS B 252 SITE 2 AC2 12 GLU B 255 GLU B 256 TYR F 307 HOH B 458 SITE 3 AC2 12 VAL C 3 ALA C 4 VAL D 3 HOH D 401 SITE 1 AC3 11 TYR E 307 ARG B 74 HIS B 75 SNN B 176 SITE 2 AC3 11 HIS B 177 GLY B 178 GLU B 217 CYS B 219 SITE 3 AC3 11 SER B 247 ASP B 269 ALA D 4 SITE 1 AC4 11 TYR E 307 GLY B 178 GLY B 179 ALA B 218 SITE 2 AC4 11 GLU B 220 SER B 221 SER B 246 SER B 247 SITE 3 AC4 11 HOH B 421 ALA D 4 ASP D 5 CRYST1 41.740 78.070 77.719 90.00 92.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023958 0.000000 0.001247 0.00000 SCALE2 0.000000 0.012809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012884 0.00000