HEADER CHAPERONE 29-JUN-17 5OBU TITLE MYCOPLASMA GENITALIUM DNAK DELETION MUTANT LACKING SBDALPHA IN COMPLEX TITLE 2 WITH AMPPNP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSP70,HEAT SHOCK 70 KDA PROTEIN,HEAT SHOCK PROTEIN 70; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: CONTAINS A C-TERMINAL HEXA-HISTIDINE TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA GENITALIUM G37; SOURCE 3 ORGANISM_TAXID: 243273; SOURCE 4 GENE: DNAK, HSP70, MG305; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS COMPLEX, CO-FACTOR, ATP HYDROLYSIS, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR M.ADELL,B.CALISTO,I.FITA,L.MARTINELLI REVDAT 2 17-JAN-24 5OBU 1 LINK REVDAT 1 09-MAY-18 5OBU 0 JRNL AUTH M.ADELL,B.M.CALISTO,I.FITA,L.MARTINELLI JRNL TITL THE NUCLEOTIDE-BOUND/SUBSTRATE-BOUND CONFORMATION OF THE JRNL TITL 2 MYCOPLASMA GENITALIUM DNAK CHAPERONE. JRNL REF PROTEIN SCI. V. 27 1000 2018 JRNL REFN ESSN 1469-896X JRNL PMID 29520883 JRNL DOI 10.1002/PRO.3401 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 37771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3960 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.468 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4067 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3957 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5501 ; 1.252 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9219 ; 0.870 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 522 ; 5.289 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;37.085 ;25.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 773 ;12.551 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;12.155 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 651 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4460 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 702 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8457 -53.4818 -27.6499 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.0254 REMARK 3 T33: 0.0265 T12: -0.0083 REMARK 3 T13: -0.0071 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.2829 L22: 0.2041 REMARK 3 L33: 0.4881 L12: -0.0547 REMARK 3 L13: -0.2030 L23: 0.2862 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: 0.0093 S13: 0.0282 REMARK 3 S21: -0.0214 S22: 0.0184 S23: -0.0165 REMARK 3 S31: -0.0573 S32: 0.0373 S33: -0.0156 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5OBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41211 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2V7Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PEG MME 5000 AND REMARK 280 BUTANOL., PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.06300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 66.91150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.91150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.09450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.91150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 66.91150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.03150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.91150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.91150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.09450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 66.91150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.91150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 16.03150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 32.06300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 484 REMARK 465 ASN A 485 REMARK 465 GLY A 486 REMARK 465 ASN A 487 REMARK 465 LEU A 488 REMARK 465 HIS A 528 REMARK 465 HIS A 529 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 367 CG1 CG2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 SER A 483 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 385 122.60 -35.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD2 REMARK 620 2 ANP A 602 O2B 103.9 REMARK 620 3 HOH A 702 O 53.5 51.9 REMARK 620 4 HOH A 808 O 85.2 68.1 78.4 REMARK 620 5 HOH A 834 O 115.6 113.5 142.8 64.7 REMARK 620 6 HOH A 879 O 172.1 68.2 118.9 91.2 68.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 603 DBREF 5OBU A 1 521 UNP P47547 DNAK_MYCGE 1 521 SEQADV 5OBU LEU A 522 UNP P47547 EXPRESSION TAG SEQADV 5OBU GLU A 523 UNP P47547 EXPRESSION TAG SEQADV 5OBU HIS A 524 UNP P47547 EXPRESSION TAG SEQADV 5OBU HIS A 525 UNP P47547 EXPRESSION TAG SEQADV 5OBU HIS A 526 UNP P47547 EXPRESSION TAG SEQADV 5OBU HIS A 527 UNP P47547 EXPRESSION TAG SEQADV 5OBU HIS A 528 UNP P47547 EXPRESSION TAG SEQADV 5OBU HIS A 529 UNP P47547 EXPRESSION TAG SEQRES 1 A 529 MET SER ALA ASP ASN GLY LEU ILE ILE GLY ILE ASP LEU SEQRES 2 A 529 GLY THR THR ASN SER CYS VAL SER VAL MET GLU GLY GLY SEQRES 3 A 529 ARG PRO VAL VAL LEU GLU ASN PRO GLU GLY LYS ARG THR SEQRES 4 A 529 THR PRO SER ILE VAL SER TYR LYS ASN ASN GLU ILE ILE SEQRES 5 A 529 VAL GLY ASP ALA ALA LYS ARG GLN MET VAL THR ASN PRO SEQRES 6 A 529 ASN THR ILE VAL SER ILE LYS ARG LEU MET GLY THR SER SEQRES 7 A 529 ASN LYS VAL LYS VAL GLN ASN ALA ASP GLY THR THR LYS SEQRES 8 A 529 GLU LEU SER PRO GLU GLN VAL SER ALA GLN ILE LEU SER SEQRES 9 A 529 TYR LEU LYS ASP PHE ALA GLU LYS LYS ILE GLY LYS LYS SEQRES 10 A 529 ILE SER ARG ALA VAL ILE THR VAL PRO ALA TYR PHE ASN SEQRES 11 A 529 ASP ALA GLU ARG ASN ALA THR LYS THR ALA GLY LYS ILE SEQRES 12 A 529 ALA GLY LEU ASN VAL GLU ARG ILE ILE ASN GLU PRO THR SEQRES 13 A 529 ALA ALA ALA LEU ALA TYR GLY ILE ASP LYS ALA SER ARG SEQRES 14 A 529 GLU MET LYS VAL LEU VAL TYR ASP LEU GLY GLY GLY THR SEQRES 15 A 529 PHE ASP VAL SER LEU LEU ASP ILE ALA GLU GLY THR PHE SEQRES 16 A 529 GLU VAL LEU ALA THR ALA GLY ASP ASN ARG LEU GLY GLY SEQRES 17 A 529 ASP ASP TRP ASP ASN LYS ILE ILE GLU TYR ILE SER ALA SEQRES 18 A 529 TYR ILE ALA LYS GLU HIS GLN GLY LEU ASN LEU SER LYS SEQRES 19 A 529 ASP LYS MET ALA MET GLN ARG LEU LYS GLU ALA ALA GLU SEQRES 20 A 529 ARG ALA LYS ILE GLU LEU SER ALA GLN LEU GLU THR ILE SEQRES 21 A 529 ILE SER LEU PRO PHE LEU THR VAL THR GLN LYS GLY PRO SEQRES 22 A 529 VAL ASN VAL GLU LEU LYS LEU THR ARG ALA LYS PHE GLU SEQRES 23 A 529 GLU LEU THR LYS PRO LEU LEU GLU ARG THR ARG ASN PRO SEQRES 24 A 529 ILE SER ASP VAL ILE LYS GLU ALA LYS ILE LYS PRO GLU SEQRES 25 A 529 GLU ILE ASN GLU ILE LEU LEU VAL GLY GLY SER THR ARG SEQRES 26 A 529 MET PRO ALA VAL GLN LYS LEU VAL GLU SER MET VAL PRO SEQRES 27 A 529 GLY LYS LYS PRO ASN ARG SER ILE ASN PRO ASP GLU VAL SEQRES 28 A 529 VAL ALA ILE GLY ALA ALA ILE GLN GLY GLY VAL LEU ARG SEQRES 29 A 529 GLY ASP VAL LYS ASP VAL LEU LEU LEU ASP VAL THR PRO SEQRES 30 A 529 LEU THR LEU SER ILE GLU THR LEU GLY GLY VAL ALA THR SEQRES 31 A 529 PRO LEU ILE LYS ARG ASN THR THR ILE PRO VAL SER LYS SEQRES 32 A 529 SER GLN ILE PHE SER THR ALA GLN ASP ASN GLN GLU SER SEQRES 33 A 529 VAL ASP VAL VAL VAL CYS GLN GLY GLU ARG PRO MET SER SEQRES 34 A 529 ARG ASP ASN LYS SER LEU GLY ARG PHE ASN LEU GLY GLY SEQRES 35 A 529 ILE GLN PRO ALA PRO LYS GLY LYS PRO GLN ILE GLU ILE SEQRES 36 A 529 THR PHE SER LEU ASP ALA ASN GLY ILE LEU ASN VAL LYS SEQRES 37 A 529 ALA LYS ASP LEU THR THR GLN LYS GLU ASN SER ILE THR SEQRES 38 A 529 ILE SER ASP ASN GLY ASN LEU SER GLU GLU GLU ILE GLN SEQRES 39 A 529 LYS MET ILE ARG ASP ALA GLU ALA ASN LYS GLU ARG ASP SEQRES 40 A 529 ASN ILE ILE ARG GLU ARG ILE GLU LEU ARG ASN GLU GLY SEQRES 41 A 529 GLU LEU GLU HIS HIS HIS HIS HIS HIS HET MG A 601 1 HET ANP A 602 31 HET SCN A 603 3 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM SCN THIOCYANATE ION FORMUL 2 MG MG 2+ FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 SCN C N S 1- FORMUL 5 HOH *363(H2 O) HELIX 1 AA1 GLY A 54 ARG A 59 1 6 HELIX 2 AA2 ILE A 71 MET A 75 5 5 HELIX 3 AA3 SER A 94 GLY A 115 1 22 HELIX 4 AA4 ASN A 130 ALA A 144 1 15 HELIX 5 AA5 GLU A 154 TYR A 162 1 9 HELIX 6 AA6 GLY A 163 ALA A 167 5 5 HELIX 7 AA7 GLY A 207 HIS A 227 1 21 HELIX 8 AA8 ASP A 235 SER A 254 1 20 HELIX 9 AA9 ARG A 282 ARG A 295 1 14 HELIX 10 AB1 THR A 296 ALA A 307 1 12 HELIX 11 AB2 LYS A 310 ILE A 314 5 5 HELIX 12 AB3 GLY A 321 ARG A 325 5 5 HELIX 13 AB4 MET A 326 VAL A 337 1 12 HELIX 14 AB5 GLU A 350 GLY A 365 1 16 HELIX 15 AB6 MET A 428 ASN A 432 5 5 HELIX 16 AB7 GLU A 490 ASN A 503 1 14 HELIX 17 AB8 ASN A 503 GLU A 512 1 10 SHEET 1 AA1 3 ARG A 27 VAL A 30 0 SHEET 2 AA1 3 ASN A 17 GLU A 24 -1 N GLU A 24 O ARG A 27 SHEET 3 AA1 3 THR A 40 PRO A 41 -1 O THR A 40 N SER A 18 SHEET 1 AA2 5 ARG A 27 VAL A 30 0 SHEET 2 AA2 5 ASN A 17 GLU A 24 -1 N GLU A 24 O ARG A 27 SHEET 3 AA2 5 ILE A 9 LEU A 13 -1 N GLY A 10 O SER A 21 SHEET 4 AA2 5 ARG A 120 VAL A 125 1 O VAL A 122 N ILE A 11 SHEET 5 AA2 5 ASN A 147 ASN A 153 1 O ASN A 147 N ALA A 121 SHEET 1 AA3 3 GLU A 50 VAL A 53 0 SHEET 2 AA3 3 ILE A 43 LYS A 47 -1 N SER A 45 O ILE A 52 SHEET 3 AA3 3 ILE A 68 VAL A 69 -1 O ILE A 68 N VAL A 44 SHEET 1 AA4 2 VAL A 81 GLN A 84 0 SHEET 2 AA4 2 THR A 90 LEU A 93 -1 O LYS A 91 N VAL A 83 SHEET 1 AA5 4 THR A 194 ASP A 203 0 SHEET 2 AA5 4 PHE A 183 ALA A 191 -1 N ASP A 189 O GLU A 196 SHEET 3 AA5 4 MET A 171 LEU A 178 -1 N ASP A 177 O ASP A 184 SHEET 4 AA5 4 GLU A 316 VAL A 320 1 O LEU A 318 N LEU A 174 SHEET 1 AA6 2 GLU A 258 THR A 269 0 SHEET 2 AA6 2 GLY A 272 THR A 281 -1 O LEU A 278 N ILE A 261 SHEET 1 AA7 4 VAL A 388 ILE A 393 0 SHEET 2 AA7 4 LEU A 380 THR A 384 -1 N ILE A 382 O THR A 390 SHEET 3 AA7 4 VAL A 417 GLN A 423 -1 O CYS A 422 N SER A 381 SHEET 4 AA7 4 LYS A 433 LEU A 440 -1 O PHE A 438 N VAL A 419 SHEET 1 AA8 5 GLU A 477 ILE A 482 0 SHEET 2 AA8 5 LEU A 465 ASP A 471 -1 N ALA A 469 O ASN A 478 SHEET 3 AA8 5 ILE A 453 LEU A 459 -1 N SER A 458 O ASN A 466 SHEET 4 AA8 5 VAL A 401 THR A 409 -1 N VAL A 401 O LEU A 459 SHEET 5 AA8 5 GLU A 521 LEU A 522 1 O LEU A 522 N SER A 408 LINK OD2 ASP A 12 MG MG A 601 1555 1555 2.65 LINK MG MG A 601 O2B ANP A 602 1555 1555 2.42 LINK MG MG A 601 O HOH A 702 1555 1555 2.88 LINK MG MG A 601 O HOH A 808 1555 1555 2.78 LINK MG MG A 601 O HOH A 834 1555 1555 2.85 LINK MG MG A 601 O HOH A 879 1555 1555 2.79 CISPEP 1 ILE A 399 PRO A 400 0 5.45 SITE 1 AC1 6 ASP A 12 ANP A 602 HOH A 702 HOH A 808 SITE 2 AC1 6 HOH A 834 HOH A 879 SITE 1 AC2 28 GLY A 14 THR A 15 THR A 16 ASN A 17 SITE 2 AC2 28 GLY A 179 GLY A 180 GLY A 181 THR A 182 SITE 3 AC2 28 GLY A 208 GLU A 247 LYS A 250 SER A 254 SITE 4 AC2 28 GLY A 321 GLY A 322 SER A 323 ARG A 325 SITE 5 AC2 28 MET A 326 ASP A 349 MG A 601 HOH A 702 SITE 6 AC2 28 HOH A 710 HOH A 732 HOH A 808 HOH A 809 SITE 7 AC2 28 HOH A 838 HOH A 879 HOH A 911 HOH A 961 SITE 1 AC3 5 LYS A 279 LYS A 331 HOH A 743 HOH A 816 SITE 2 AC3 5 HOH A 859 CRYST1 133.823 133.823 64.126 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007473 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015594 0.00000