HEADER OXIDOREDUCTASE 29-JUN-17 5OC0 TITLE STRUCTURE OF E. COLI SUPEROXIDE OXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME B561; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME B-561; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: CYBB, B1418, JW5224; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN, SUPEROXIDE, ELECTRON TRANSPORT, HEME, RESPIRATORY KEYWDS 2 CHAIN, ROS, QUINONE, UBIQUINONE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.K.LUNDGREN,D.SJOSTRAND,O.BINER,M.BENNETT,C.VON BALLMOOS,M.HOGBOM REVDAT 3 07-NOV-18 5OC0 1 JRNL REVDAT 2 04-JUL-18 5OC0 1 JRNL REVDAT 1 20-JUN-18 5OC0 0 JRNL AUTH C.A.K.LUNDGREN,D.SJOSTRAND,O.BINER,M.BENNETT,A.RUDLING, JRNL AUTH 2 A.L.JOHANSSON,P.BRZEZINSKI,J.CARLSSON,C.VON BALLMOOS, JRNL AUTH 3 M.HOGBOM JRNL TITL SCAVENGING OF SUPEROXIDE BY A MEMBRANE-BOUND SUPEROXIDE JRNL TITL 2 OXIDASE. JRNL REF NAT. CHEM. BIOL. V. 14 788 2018 JRNL REFN ESSN 1552-4469 JRNL PMID 29915379 JRNL DOI 10.1038/S41589-018-0072-X REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1093 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1503 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1414 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.39000 REMARK 3 B22 (A**2) : -2.12000 REMARK 3 B33 (A**2) : -1.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.665 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1604 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1566 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2202 ; 1.829 ; 2.060 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3577 ; 1.012 ; 2.950 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 173 ; 5.425 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;29.819 ;20.877 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 217 ;15.198 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 225 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1693 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 398 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 695 ; 1.598 ; 2.812 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 694 ; 1.599 ; 2.810 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 867 ; 2.320 ; 4.201 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 868 ; 2.319 ; 4.203 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 909 ; 2.578 ; 3.409 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 910 ; 2.578 ; 3.412 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1336 ; 3.776 ; 4.990 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1911 ; 5.591 ;25.818 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1905 ; 5.587 ;25.761 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5240 30.3900 34.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.2825 T22: 0.1567 REMARK 3 T33: 0.1276 T12: 0.0003 REMARK 3 T13: 0.0360 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 14.6921 L22: 1.2878 REMARK 3 L33: 7.5473 L12: 0.8223 REMARK 3 L13: 3.1371 L23: 1.0482 REMARK 3 S TENSOR REMARK 3 S11: -0.1516 S12: -0.2845 S13: -1.0397 REMARK 3 S21: -0.1778 S22: 0.1673 S23: -0.0307 REMARK 3 S31: 1.0313 S32: -0.1263 S33: -0.0157 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9910 50.3130 45.3300 REMARK 3 T TENSOR REMARK 3 T11: 0.1645 T22: 0.1784 REMARK 3 T33: 0.0421 T12: -0.0434 REMARK 3 T13: -0.0152 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.7089 L22: 2.8110 REMARK 3 L33: 3.6751 L12: 1.0385 REMARK 3 L13: 0.6110 L23: 1.3504 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: -0.0023 S13: 0.0830 REMARK 3 S21: 0.1408 S22: 0.0577 S23: -0.0759 REMARK 3 S31: -0.1405 S32: 0.3216 S33: 0.0056 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6180 62.4640 47.4560 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.3860 REMARK 3 T33: 0.4053 T12: -0.2089 REMARK 3 T13: -0.0084 T23: -0.1888 REMARK 3 L TENSOR REMARK 3 L11: 5.1040 L22: 19.2557 REMARK 3 L33: 37.6439 L12: 9.6789 REMARK 3 L13: 10.1356 L23: 18.7667 REMARK 3 S TENSOR REMARK 3 S11: -0.1683 S12: -0.0795 S13: 0.2305 REMARK 3 S21: -0.2715 S22: 0.1441 S23: -0.1297 REMARK 3 S31: -1.1242 S32: 0.3266 S33: 0.0242 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1970 42.2130 32.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.2027 T22: 0.2188 REMARK 3 T33: 0.0418 T12: -0.0531 REMARK 3 T13: 0.0366 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 1.8996 L22: 2.7326 REMARK 3 L33: 2.2964 L12: 1.3774 REMARK 3 L13: 1.9880 L23: 1.7838 REMARK 3 S TENSOR REMARK 3 S11: 0.1268 S12: 0.0065 S13: -0.1060 REMARK 3 S21: -0.0452 S22: -0.0550 S23: -0.1167 REMARK 3 S31: 0.0818 S32: 0.1634 S33: -0.0718 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4930 39.2420 31.4760 REMARK 3 T TENSOR REMARK 3 T11: 0.1528 T22: 0.4679 REMARK 3 T33: 0.2521 T12: -0.1290 REMARK 3 T13: -0.0764 T23: 0.0688 REMARK 3 L TENSOR REMARK 3 L11: 10.4123 L22: 26.2936 REMARK 3 L33: 3.4727 L12: 15.0047 REMARK 3 L13: -2.3609 L23: -2.9922 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: 0.3450 S13: 0.6490 REMARK 3 S21: 0.0345 S22: 0.2645 S23: 1.4810 REMARK 3 S31: 0.1943 S32: -0.7335 S33: -0.3077 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6790 57.5480 31.6850 REMARK 3 T TENSOR REMARK 3 T11: 0.2850 T22: 0.2248 REMARK 3 T33: 0.0524 T12: -0.1297 REMARK 3 T13: -0.0332 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 8.7468 L22: 10.0451 REMARK 3 L33: 0.8901 L12: 8.8158 REMARK 3 L13: -0.1898 L23: 0.3230 REMARK 3 S TENSOR REMARK 3 S11: -0.3038 S12: 0.5111 S13: 0.3416 REMARK 3 S21: -0.2784 S22: 0.3498 S23: 0.1884 REMARK 3 S31: -0.3445 S32: 0.1488 S33: -0.0460 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3290 60.5130 33.5910 REMARK 3 T TENSOR REMARK 3 T11: 0.3543 T22: 0.2781 REMARK 3 T33: 0.4677 T12: -0.2023 REMARK 3 T13: 0.1667 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 1.0132 L22: 8.4346 REMARK 3 L33: 5.4161 L12: -0.1194 REMARK 3 L13: -1.7633 L23: -4.0344 REMARK 3 S TENSOR REMARK 3 S11: -0.1633 S12: -0.1715 S13: 0.0832 REMARK 3 S21: -0.5837 S22: -0.3420 S23: -1.6098 REMARK 3 S31: 0.3425 S32: 0.6736 S33: 0.5053 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0560 73.2660 27.9350 REMARK 3 T TENSOR REMARK 3 T11: 0.7418 T22: 0.3708 REMARK 3 T33: 0.5838 T12: -0.3856 REMARK 3 T13: 0.1139 T23: 0.2363 REMARK 3 L TENSOR REMARK 3 L11: 49.3160 L22: 12.9838 REMARK 3 L33: 1.9313 L12: -20.0501 REMARK 3 L13: 4.5969 L23: 0.8199 REMARK 3 S TENSOR REMARK 3 S11: -0.4612 S12: 1.1127 S13: 2.8470 REMARK 3 S21: -0.5049 S22: 0.1554 S23: -0.9991 REMARK 3 S31: -0.4726 S32: 0.4402 S33: 0.3058 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7630 65.9600 34.9320 REMARK 3 T TENSOR REMARK 3 T11: 0.2995 T22: 0.1329 REMARK 3 T33: 0.1440 T12: -0.0439 REMARK 3 T13: -0.0943 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 12.2165 L22: 19.2596 REMARK 3 L33: 9.1242 L12: 10.4190 REMARK 3 L13: -4.2934 L23: -8.3305 REMARK 3 S TENSOR REMARK 3 S11: -0.3212 S12: 0.7077 S13: 0.9706 REMARK 3 S21: -0.3745 S22: 0.4143 S23: 0.4595 REMARK 3 S31: -0.9203 S32: -0.0284 S33: -0.0931 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3940 47.9830 43.1130 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.2294 REMARK 3 T33: 0.0718 T12: -0.0168 REMARK 3 T13: 0.0101 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.6353 L22: 10.1929 REMARK 3 L33: 2.3912 L12: 3.5873 REMARK 3 L13: -0.8571 L23: -0.2721 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.0653 S13: 0.0639 REMARK 3 S21: 0.2099 S22: -0.0839 S23: 0.2152 REMARK 3 S31: -0.0459 S32: -0.3351 S33: 0.0290 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6260 33.6980 43.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.2165 T22: 0.1961 REMARK 3 T33: 0.0473 T12: -0.1159 REMARK 3 T13: 0.0136 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 4.8706 L22: 6.9210 REMARK 3 L33: 5.3966 L12: 1.0826 REMARK 3 L13: -2.9563 L23: 0.7649 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: -0.0899 S13: 0.1386 REMARK 3 S21: 0.3853 S22: -0.0390 S23: 0.5401 REMARK 3 S31: 0.4171 S32: -0.5513 S33: 0.0029 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9290 27.8050 45.1680 REMARK 3 T TENSOR REMARK 3 T11: 1.2587 T22: 0.4124 REMARK 3 T33: 0.2401 T12: 0.0254 REMARK 3 T13: -0.0511 T23: 0.1931 REMARK 3 L TENSOR REMARK 3 L11: 45.1587 L22: 3.5494 REMARK 3 L33: 14.2353 L12: -5.5531 REMARK 3 L13: 22.2853 L23: 0.2982 REMARK 3 S TENSOR REMARK 3 S11: 1.0147 S12: -1.9752 S13: -2.2498 REMARK 3 S21: 1.2243 S22: 0.3676 S23: -0.0004 REMARK 3 S31: 1.9897 S32: -0.7872 S33: -1.3824 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, GLYCEROL, PEG 2000 MME, REMARK 280 MAGNESIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.96150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.96150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.02300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.55100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.02300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.55100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.96150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.02300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.55100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.96150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.02300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.55100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 203 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 176 REMARK 465 SER A 177 REMARK 465 VAL A 178 REMARK 465 PRO A 179 REMARK 465 GLY A 180 REMARK 465 SER A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 13 NE2 REMARK 620 2 HEM A 201 NA 89.4 REMARK 620 3 HEM A 201 NB 89.0 90.1 REMARK 620 4 HEM A 201 NC 91.4 179.1 89.4 REMARK 620 5 HEM A 201 ND 92.4 90.2 178.5 90.2 REMARK 620 6 HIS A 151 NE2 178.8 90.4 89.8 88.8 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 45 NE2 REMARK 620 2 HEM A 202 NA 89.6 REMARK 620 3 HEM A 202 NB 88.8 90.6 REMARK 620 4 HEM A 202 NC 89.3 178.8 88.7 REMARK 620 5 HEM A 202 ND 90.6 89.4 179.4 91.2 REMARK 620 6 HIS A 137 NE2 177.1 91.5 93.9 89.6 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 63 O REMARK 620 2 LEU A 64 O 84.2 REMARK 620 3 TYR A 66 O 78.8 100.2 REMARK 620 4 ARG A 63 O 0.0 84.2 78.8 REMARK 620 5 LEU A 64 O 84.2 0.0 100.2 84.2 REMARK 620 6 TYR A 66 O 78.8 100.2 0.0 78.8 100.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 37X A 205 DBREF 5OC0 A 1 176 UNP P0ABE5 C561_ECOLI 1 176 SEQADV 5OC0 SER A 177 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 VAL A 178 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 PRO A 179 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 GLY A 180 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 SER A 181 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 HIS A 182 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 HIS A 183 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 HIS A 184 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 HIS A 185 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 HIS A 186 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 HIS A 187 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 HIS A 188 UNP P0ABE5 EXPRESSION TAG SEQADV 5OC0 HIS A 189 UNP P0ABE5 EXPRESSION TAG SEQRES 1 A 189 MSE GLU ASN LYS TYR SER ARG LEU GLN ILE SER ILE HIS SEQRES 2 A 189 TRP LEU VAL PHE LEU LEU VAL ILE ALA ALA TYR CYS ALA SEQRES 3 A 189 MSE GLU PHE ARG GLY PHE PHE PRO ARG SER ASP ARG PRO SEQRES 4 A 189 LEU ILE ASN MSE ILE HIS VAL SER CYS GLY ILE SER ILE SEQRES 5 A 189 LEU VAL LEU MSE VAL VAL ARG LEU LEU LEU ARG LEU LYS SEQRES 6 A 189 TYR PRO THR PRO PRO ILE ILE PRO LYS PRO LYS PRO MSE SEQRES 7 A 189 MSE THR GLY LEU ALA HIS LEU GLY HIS LEU VAL ILE TYR SEQRES 8 A 189 LEU LEU PHE ILE ALA LEU PRO VAL ILE GLY LEU VAL MSE SEQRES 9 A 189 MSE TYR ASN ARG GLY ASN PRO TRP PHE ALA PHE GLY LEU SEQRES 10 A 189 THR MSE PRO TYR ALA SER GLU ALA ASN PHE GLU ARG VAL SEQRES 11 A 189 ASP SER LEU LYS SER TRP HIS GLU THR LEU ALA ASN LEU SEQRES 12 A 189 GLY TYR PHE VAL ILE GLY LEU HIS ALA ALA ALA ALA LEU SEQRES 13 A 189 ALA HIS HIS TYR PHE TRP LYS ASP ASN THR LEU LEU ARG SEQRES 14 A 189 MSE MSE PRO ARG LYS ARG SER SER VAL PRO GLY SER HIS SEQRES 15 A 189 HIS HIS HIS HIS HIS HIS HIS MODRES 5OC0 MSE A 27 MET MODIFIED RESIDUE MODRES 5OC0 MSE A 43 MET MODIFIED RESIDUE MODRES 5OC0 MSE A 56 MET MODIFIED RESIDUE MODRES 5OC0 MSE A 78 MET MODIFIED RESIDUE MODRES 5OC0 MSE A 79 MET MODIFIED RESIDUE MODRES 5OC0 MSE A 104 MET MODIFIED RESIDUE MODRES 5OC0 MSE A 105 MET MODIFIED RESIDUE MODRES 5OC0 MSE A 119 MET MODIFIED RESIDUE MODRES 5OC0 MSE A 170 MET MODIFIED RESIDUE MODRES 5OC0 MSE A 171 MET MODIFIED RESIDUE HET MSE A 27 8 HET MSE A 43 8 HET MSE A 56 8 HET MSE A 78 8 HET MSE A 79 8 HET MSE A 104 8 HET MSE A 105 8 HET MSE A 119 8 HET MSE A 170 8 HET MSE A 171 8 HET HEM A 201 43 HET HEM A 202 43 HET MG A 203 1 HET GOL A 204 6 HET 37X A 205 39 HETNAM MSE SELENOMETHIONINE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM 37X OCTYL GLUCOSE NEOPENTYL GLYCOL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 HEM 2(C34 H32 FE N4 O4) FORMUL 4 MG MG 2+ FORMUL 5 GOL C3 H8 O3 FORMUL 6 37X C27 H52 O12 FORMUL 7 HOH *25(H2 O) HELIX 1 AA1 SER A 6 PHE A 29 1 24 HELIX 2 AA2 ARG A 30 PHE A 33 5 4 HELIX 3 AA3 PRO A 34 SER A 36 5 3 HELIX 4 AA4 ASP A 37 TYR A 66 1 30 HELIX 5 AA5 LYS A 76 ARG A 108 1 33 HELIX 6 AA6 ASN A 126 PHE A 161 1 36 HELIX 7 AA7 LEU A 167 MSE A 171 5 5 SHEET 1 AA1 2 TRP A 112 ALA A 114 0 SHEET 2 AA1 2 LEU A 117 MSE A 119 -1 O MSE A 119 N TRP A 112 LINK NE2 HIS A 13 FE HEM A 201 1555 1555 1.93 LINK C ALA A 26 N MSE A 27 1555 1555 1.34 LINK C MSE A 27 N GLU A 28 1555 1555 1.33 LINK C ASN A 42 N MSE A 43 1555 1555 1.32 LINK C MSE A 43 N ILE A 44 1555 1555 1.34 LINK NE2 HIS A 45 FE HEM A 202 1555 1555 2.14 LINK C LEU A 55 N MSE A 56 1555 1555 1.35 LINK C MSE A 56 N VAL A 57 1555 1555 1.31 LINK O ARG A 63 MG MG A 203 1555 1555 2.39 LINK O LEU A 64 MG MG A 203 1555 1555 2.72 LINK O TYR A 66 MG MG A 203 1555 1555 2.30 LINK C PRO A 77 N MSE A 78 1555 1555 1.34 LINK C MSE A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N THR A 80 1555 1555 1.33 LINK C VAL A 103 N MSE A 104 1555 1555 1.35 LINK C MSE A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N TYR A 106 1555 1555 1.32 LINK C THR A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N PRO A 120 1555 1555 1.33 LINK NE2 HIS A 137 FE HEM A 202 1555 1555 2.03 LINK NE2 HIS A 151 FE HEM A 201 1555 1555 1.95 LINK C ARG A 169 N MSE A 170 1555 1555 1.35 LINK C MSE A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N PRO A 172 1555 1555 1.35 LINK O ARG A 63 MG MG A 203 1555 3555 2.37 LINK O LEU A 64 MG MG A 203 1555 3555 2.83 LINK O TYR A 66 MG MG A 203 1555 3555 2.28 CISPEP 1 ILE A 72 PRO A 73 0 -4.67 SITE 1 AC1 18 TYR A 5 HIS A 13 TRP A 14 PHE A 17 SITE 2 AC1 18 ARG A 59 ARG A 63 HIS A 87 TYR A 91 SITE 3 AC1 18 HIS A 151 ALA A 155 THR A 166 LEU A 167 SITE 4 AC1 18 ARG A 169 MSE A 170 GOL A 204 HOH A 301 SITE 5 AC1 18 HOH A 303 HOH A 312 SITE 1 AC2 17 TYR A 24 MSE A 27 ARG A 30 HIS A 45 SITE 2 AC2 17 VAL A 46 GLY A 49 ILE A 50 LEU A 97 SITE 3 AC2 17 PRO A 98 GLY A 101 LEU A 102 MSE A 105 SITE 4 AC2 17 ARG A 108 LYS A 134 HIS A 137 ALA A 141 SITE 5 AC2 17 ARG A 173 SITE 1 AC3 3 ARG A 63 LEU A 64 TYR A 66 SITE 1 AC4 5 HIS A 87 HIS A 151 HEM A 201 HOH A 301 SITE 2 AC4 5 HOH A 311 SITE 1 AC5 7 ARG A 7 LEU A 8 SER A 11 LEU A 15 SITE 2 AC5 7 PHE A 32 PRO A 34 ASP A 37 CRYST1 68.046 91.102 97.923 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014696 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010212 0.00000