HEADER OXIDOREDUCTASE 29-JUN-17 5OC1 TITLE CRYSTAL STRUCTURE OF ARYL-ALCOHOL OXIDASE FROM PLEUROTUS ERYNGII IN TITLE 2 COMPLEX WITH P-ANISIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL-ALCOHOL OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLEUROTUS ERYNGII; SOURCE 3 ORGANISM_TAXID: 5323; SOURCE 4 GENE: AAO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFLAG1 KEYWDS AAO, LIGNIN DEGRADATION, PLEUROTUS ERYNGII, OXIDOREDUCTASE, KEYWDS 2 FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.CARRO,M.MARTINEZ-JULVEZ,M.MEDINA,A.MARTINEZ,P.FERREIRA REVDAT 3 17-JAN-24 5OC1 1 REMARK REVDAT 2 08-NOV-17 5OC1 1 JRNL REVDAT 1 01-NOV-17 5OC1 0 JRNL AUTH J.CARRO,M.MARTINEZ-JULVEZ,M.MEDINA,A.T.MARTINEZ,P.FERREIRA JRNL TITL PROTEIN DYNAMICS PROMOTE HYDRIDE TUNNELLING IN SUBSTRATE JRNL TITL 2 OXIDATION BY ARYL-ALCOHOL OXIDASE. JRNL REF PHYS CHEM CHEM PHYS V. 19 28666 2017 JRNL REFN ESSN 1463-9084 JRNL PMID 29043303 JRNL DOI 10.1039/C7CP05904C REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.S.FERNANDEZ,F.J.R.DUENAS,E.SANTILLANA,P.FERREIRA, REMARK 1 AUTH 2 M.J.MARTINEZ,A.T.MARTINEZ,A.ROMERO REMARK 1 TITL NOVEL STRUCTURAL FEATURES IN THE GMC FAMILY OF REMARK 1 TITL 2 OXIDOREDUCTASES REVEALED BY THE CRYSTAL STRUCTURE OF FUNGAL REMARK 1 TITL 3 ARYL-ALCOHOL OXIDASE. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 65 1196 2009 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 19923715 REMARK 1 DOI 10.1107/S0907444909035860 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 62672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4896 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4558 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 359 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4298 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.63000 REMARK 3 B22 (A**2) : -0.63000 REMARK 3 B33 (A**2) : 2.06000 REMARK 3 B12 (A**2) : -0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.558 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4502 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6158 ; 1.661 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 564 ; 6.555 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;34.779 ;24.505 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;13.977 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.977 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 687 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3500 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2259 ; 1.908 ; 3.189 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2822 ; 3.013 ; 4.775 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2242 ; 2.532 ; 3.338 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6947 ; 5.866 ;27.184 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5OC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67615 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 43.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 40.10 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3FIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 4.5 AND 1.0 M REMARK 280 DI-AMMONIUM HYDROGEN PHOSPHATE, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.39233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.78467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.39233 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 106.78467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.39233 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 106.78467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.39233 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 106.78467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 974 O HOH A 974 10555 1.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 LEU A 158 CA - CB - CG ANGL. DEV. = -16.9 DEGREES REMARK 500 LEU A 314 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 83 166.44 177.51 REMARK 500 MET A 93 -3.46 71.11 REMARK 500 TRP A 115 -152.68 -79.10 REMARK 500 ASN A 116 136.07 80.29 REMARK 500 ASP A 185 125.67 -173.60 REMARK 500 LYS A 266 -69.73 -91.89 REMARK 500 ALA A 318 117.81 -165.79 REMARK 500 ASN A 394 45.42 -79.31 REMARK 500 ASN A 498 -145.56 -153.21 REMARK 500 PHE A 501 34.23 74.00 REMARK 500 SER A 515 -88.22 -21.81 REMARK 500 TRP A 516 -166.64 -107.17 REMARK 500 ASP A 535 -171.37 -174.74 REMARK 500 ALA A 545 143.97 -177.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 607 DBREF 5OC1 A 2 566 UNP O94219 O94219_PLEER 29 593 SEQADV 5OC1 GLU A 556 UNP O94219 LYS 583 CONFLICT SEQADV 5OC1 ARG A 557 UNP O94219 GLN 584 CONFLICT SEQRES 1 A 565 ASP PHE ASP TYR VAL VAL VAL GLY ALA GLY ASN ALA GLY SEQRES 2 A 565 ASN VAL VAL ALA ALA ARG LEU THR GLU ASP PRO ASP VAL SEQRES 3 A 565 SER VAL LEU VAL LEU GLU ALA GLY VAL SER ASP GLU ASN SEQRES 4 A 565 VAL LEU GLY ALA GLU ALA PRO LEU LEU ALA PRO GLY LEU SEQRES 5 A 565 VAL PRO ASN SER ILE PHE ASP TRP ASN TYR THR THR THR SEQRES 6 A 565 ALA GLN ALA GLY TYR ASN GLY ARG SER ILE ALA TYR PRO SEQRES 7 A 565 ARG GLY ARG MET LEU GLY GLY SER SER SER VAL HIS TYR SEQRES 8 A 565 MET VAL MET MET ARG GLY SER THR GLU ASP PHE ASP ARG SEQRES 9 A 565 TYR ALA ALA VAL THR GLY ASP GLU GLY TRP ASN TRP ASP SEQRES 10 A 565 ASN ILE GLN GLN PHE VAL ARG LYS ASN GLU MET VAL VAL SEQRES 11 A 565 PRO PRO ALA ASP ASN HIS ASN THR SER GLY GLU PHE ILE SEQRES 12 A 565 PRO ALA VAL HIS GLY THR ASN GLY SER VAL SER ILE SER SEQRES 13 A 565 LEU PRO GLY PHE PRO THR PRO LEU ASP ASP ARG VAL LEU SEQRES 14 A 565 ALA THR THR GLN GLU GLN SER GLU GLU PHE PHE PHE ASN SEQRES 15 A 565 PRO ASP MET GLY THR GLY HIS PRO LEU GLY ILE SER TRP SEQRES 16 A 565 SER ILE ALA SER VAL GLY ASN GLY GLN ARG SER SER SER SEQRES 17 A 565 SER THR ALA TYR LEU ARG PRO ALA GLN SER ARG PRO ASN SEQRES 18 A 565 LEU SER VAL LEU ILE ASN ALA GLN VAL THR LYS LEU VAL SEQRES 19 A 565 ASN SER GLY THR THR ASN GLY LEU PRO ALA PHE ARG CYS SEQRES 20 A 565 VAL GLU TYR ALA GLU GLN GLU GLY ALA PRO THR THR THR SEQRES 21 A 565 VAL CYS ALA LYS LYS GLU VAL VAL LEU SER ALA GLY SER SEQRES 22 A 565 VAL GLY THR PRO ILE LEU LEU GLN LEU SER GLY ILE GLY SEQRES 23 A 565 ASP GLU ASN ASP LEU SER SER VAL GLY ILE ASP THR ILE SEQRES 24 A 565 VAL ASN ASN PRO SER VAL GLY ARG ASN LEU SER ASP HIS SEQRES 25 A 565 LEU LEU LEU PRO ALA ALA PHE PHE VAL ASN SER ASN GLN SEQRES 26 A 565 THR PHE ASP ASN ILE PHE ARG ASP SER SER GLU PHE ASN SEQRES 27 A 565 VAL ASP LEU ASP GLN TRP THR ASN THR ARG THR GLY PRO SEQRES 28 A 565 LEU THR ALA LEU ILE ALA ASN HIS LEU ALA TRP LEU ARG SEQRES 29 A 565 LEU PRO SER ASN SER SER ILE PHE GLN THR PHE PRO ASP SEQRES 30 A 565 PRO ALA ALA GLY PRO ASN SER ALA HIS TRP GLU THR ILE SEQRES 31 A 565 PHE SER ASN GLN TRP PHE HIS PRO ALA ILE PRO ARG PRO SEQRES 32 A 565 ASP THR GLY SER PHE MET SER VAL THR ASN ALA LEU ILE SEQRES 33 A 565 SER PRO VAL ALA ARG GLY ASP ILE LYS LEU ALA THR SER SEQRES 34 A 565 ASN PRO PHE ASP LYS PRO LEU ILE ASN PRO GLN TYR LEU SEQRES 35 A 565 SER THR GLU PHE ASP ILE PHE THR MET ILE GLN ALA VAL SEQRES 36 A 565 LYS SER ASN LEU ARG PHE LEU SER GLY GLN ALA TRP ALA SEQRES 37 A 565 ASP PHE VAL ILE ARG PRO PHE ASP PRO ARG LEU ARG ASP SEQRES 38 A 565 PRO THR ASP ASP ALA ALA ILE GLU SER TYR ILE ARG ASP SEQRES 39 A 565 ASN ALA ASN THR ILE PHE HIS PRO VAL GLY THR ALA SER SEQRES 40 A 565 MET SER PRO ARG GLY ALA SER TRP GLY VAL VAL ASP PRO SEQRES 41 A 565 ASP LEU LYS VAL LYS GLY VAL ASP GLY LEU ARG ILE VAL SEQRES 42 A 565 ASP GLY SER ILE LEU PRO PHE ALA PRO ASN ALA HIS THR SEQRES 43 A 565 GLN GLY PRO ILE TYR LEU VAL GLY GLU ARG GLY ALA ASP SEQRES 44 A 565 LEU ILE LYS ALA ASP GLN HET ANN A 601 11 HET FAD A 602 53 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HET GOL A 607 6 HETNAM ANN 4-METHOXYBENZOIC ACID HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETSYN ANN P-ANISIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ANN C8 H8 O3 FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 GOL 5(C3 H8 O3) FORMUL 9 HOH *280(H2 O) HELIX 1 AA1 ALA A 13 THR A 22 1 10 HELIX 2 AA2 VAL A 41 GLU A 45 5 5 HELIX 3 AA3 ALA A 46 LEU A 53 5 8 HELIX 4 AA4 GLN A 68 ASN A 72 5 5 HELIX 5 AA5 GLY A 85 VAL A 90 5 6 HELIX 6 AA6 SER A 99 GLY A 111 1 13 HELIX 7 AA7 ASN A 116 ASN A 127 1 12 HELIX 8 AA8 ILE A 144 HIS A 148 5 5 HELIX 9 AA9 PRO A 164 GLN A 176 1 13 HELIX 10 AB1 ASP A 185 GLY A 189 5 5 HELIX 11 AB2 SER A 208 TYR A 213 1 6 HELIX 12 AB3 LEU A 214 GLN A 218 5 5 HELIX 13 AB4 ALA A 272 SER A 284 1 13 HELIX 14 AB5 ASP A 288 SER A 294 1 7 HELIX 15 AB6 PHE A 328 ARG A 333 5 6 HELIX 16 AB7 ASP A 334 ARG A 349 1 16 HELIX 17 AB8 GLY A 351 ALA A 355 5 5 HELIX 18 AB9 SER A 370 GLN A 374 5 5 HELIX 19 AC1 THR A 445 SER A 464 1 20 HELIX 20 AC2 GLY A 465 ALA A 469 5 5 HELIX 21 AC3 ASP A 477 ARG A 481 5 5 HELIX 22 AC4 ASP A 485 ALA A 497 1 13 HELIX 23 AC5 ASP A 535 LEU A 539 5 5 HELIX 24 AC6 THR A 547 ASP A 565 1 19 SHEET 1 AA1 6 LEU A 223 LEU A 226 0 SHEET 2 AA1 6 VAL A 29 LEU A 32 1 N VAL A 31 O SER A 224 SHEET 3 AA1 6 PHE A 3 VAL A 8 1 N VAL A 7 O LEU A 30 SHEET 4 AA1 6 THR A 260 LEU A 270 1 O VAL A 269 N VAL A 6 SHEET 5 AA1 6 CYS A 248 ALA A 252 -1 N VAL A 249 O VAL A 262 SHEET 6 AA1 6 GLN A 230 VAL A 235 -1 N VAL A 235 O CYS A 248 SHEET 1 AA2 5 LEU A 223 LEU A 226 0 SHEET 2 AA2 5 VAL A 29 LEU A 32 1 N VAL A 31 O SER A 224 SHEET 3 AA2 5 PHE A 3 VAL A 8 1 N VAL A 7 O LEU A 30 SHEET 4 AA2 5 THR A 260 LEU A 270 1 O VAL A 269 N VAL A 6 SHEET 5 AA2 5 LEU A 531 ILE A 533 1 O ARG A 532 N LEU A 270 SHEET 1 AA3 2 GLU A 128 VAL A 130 0 SHEET 2 AA3 2 VAL A 154 ILE A 156 1 O ILE A 156 N MET A 129 SHEET 1 AA4 6 GLY A 193 TRP A 196 0 SHEET 2 AA4 6 HIS A 360 LEU A 364 -1 O TRP A 363 N GLY A 193 SHEET 3 AA4 6 TRP A 388 SER A 393 -1 O THR A 390 N ALA A 362 SHEET 4 AA4 6 PHE A 409 LEU A 416 -1 O THR A 413 N ILE A 391 SHEET 5 AA4 6 ALA A 319 VAL A 322 -1 N PHE A 320 O MET A 410 SHEET 6 AA4 6 VAL A 472 PRO A 475 -1 O ILE A 473 N PHE A 321 SHEET 1 AA5 6 GLY A 193 TRP A 196 0 SHEET 2 AA5 6 HIS A 360 LEU A 364 -1 O TRP A 363 N GLY A 193 SHEET 3 AA5 6 TRP A 388 SER A 393 -1 O THR A 390 N ALA A 362 SHEET 4 AA5 6 PHE A 409 LEU A 416 -1 O THR A 413 N ILE A 391 SHEET 5 AA5 6 LEU A 314 LEU A 316 -1 N LEU A 316 O ASN A 414 SHEET 6 AA5 6 ASN A 498 THR A 499 -1 O ASN A 498 N LEU A 315 SHEET 1 AA6 2 VAL A 201 GLY A 202 0 SHEET 2 AA6 2 GLN A 205 ARG A 206 -1 O GLN A 205 N GLY A 202 SHEET 1 AA7 2 THR A 239 THR A 240 0 SHEET 2 AA7 2 LEU A 243 PRO A 244 -1 O LEU A 243 N THR A 240 SHEET 1 AA8 2 ILE A 286 GLY A 287 0 SHEET 2 AA8 2 VAL A 301 ASN A 302 1 O VAL A 301 N GLY A 287 SHEET 1 AA9 3 ARG A 308 LEU A 310 0 SHEET 2 AA9 3 GLY A 423 LYS A 426 -1 O GLY A 423 N LEU A 310 SHEET 3 AA9 3 LEU A 437 ASN A 439 -1 O LEU A 437 N LYS A 426 SSBOND 1 CYS A 248 CYS A 263 1555 1555 2.09 CISPEP 1 VAL A 54 PRO A 55 0 16.64 SITE 1 AC1 10 TYR A 92 ILE A 357 ILE A 391 PHE A 397 SITE 2 AC1 10 THR A 413 ILE A 500 PHE A 501 HIS A 502 SITE 3 AC1 10 HIS A 546 FAD A 602 SITE 1 AC2 37 GLY A 9 GLY A 11 ASN A 12 ALA A 13 SITE 2 AC2 37 LEU A 32 GLU A 33 ALA A 34 TRP A 61 SITE 3 AC2 37 PRO A 79 ARG A 80 GLY A 81 ARG A 82 SITE 4 AC2 37 MET A 83 GLY A 86 SER A 87 HIS A 91 SITE 5 AC2 37 TYR A 92 MET A 93 VAL A 94 ALA A 229 SITE 6 AC2 37 VAL A 231 SER A 271 ALA A 272 GLY A 273 SITE 7 AC2 37 PHE A 501 ASP A 535 GLY A 536 HIS A 546 SITE 8 AC2 37 THR A 547 GLN A 548 ILE A 551 ANN A 601 SITE 9 AC2 37 GOL A 605 HOH A 740 HOH A 781 HOH A 804 SITE 10 AC2 37 HOH A 840 SITE 1 AC3 9 ASN A 325 GLN A 326 THR A 327 GLU A 337 SITE 2 AC3 9 PRO A 352 HOH A 705 HOH A 767 HOH A 816 SITE 3 AC3 9 HOH A 919 SITE 1 AC4 10 TYR A 63 GLN A 230 ILE A 279 LEU A 283 SITE 2 AC4 10 PRO A 432 ASP A 434 HOH A 776 HOH A 791 SITE 3 AC4 10 HOH A 832 HOH A 840 SITE 1 AC5 8 ARG A 80 GLY A 273 SER A 274 PRO A 503 SITE 2 AC5 8 GLY A 536 ILE A 551 FAD A 602 HOH A 757 SITE 1 AC6 9 GLU A 142 PRO A 184 ASP A 185 MET A 186 SITE 2 AC6 9 GLY A 187 SER A 195 TRP A 196 ILE A 198 SITE 3 AC6 9 HOH A 823 SITE 1 AC7 5 PRO A 51 PHE A 397 HIS A 398 HOH A 790 SITE 2 AC7 5 HOH A 901 CRYST1 179.326 179.326 160.177 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005576 0.003220 0.000000 0.00000 SCALE2 0.000000 0.006439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006243 0.00000