data_5OC6 # _entry.id 5OC6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5OC6 pdb_00005oc6 10.2210/pdb5oc6/pdb WWPDB D_1200005557 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-12-26 2 'Structure model' 1 1 2019-01-16 3 'Structure model' 1 2 2019-04-17 4 'Structure model' 1 3 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' pdbx_database_proc 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5OC6 _pdbx_database_status.recvd_initial_deposition_date 2017-06-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bou-nader, C.' 1 ? 'Pecqueur, L.' 2 ? 'Hamdane, D.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 3117 _citation.page_last 3126 _citation.title 'Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky1302 _citation.pdbx_database_id_PubMed 30605527 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bou-Nader, C.' 1 ? primary 'Barraud, P.' 2 ? primary 'Pecqueur, L.' 3 ? primary 'Perez, J.' 4 ? primary 'Velours, C.' 5 ? primary 'Shepard, W.' 6 ? primary 'Fontecave, M.' 7 ? primary 'Tisne, C.' 8 ? primary 'Hamdane, D.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'tRNA-dihydrouridine(20) synthase [NAD(P)+]-like' 13728.697 1 1.3.1.- ? 'UNP residues 338-450' ? 2 polymer syn RNA 3482.130 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Dihydrouridine synthase 2,Up-regulated in lung cancer protein 8,URLC8,tRNA-dihydrouridine synthase 2-like,hDUS2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWD KSKKLAEQAAAIVCLRSQGLPEGRLGEESPSLHKHHHHHH ; ;MTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWD KSKKLAEQAAAIVCLRSQGLPEGRLGEESPSLHKHHHHHH ; A ? 2 polyribonucleotide no no CGAACUUCGCG CGAACUUCGCG B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 SER n 1 4 GLU n 1 5 GLN n 1 6 THR n 1 7 GLY n 1 8 GLU n 1 9 PRO n 1 10 ALA n 1 11 GLU n 1 12 ASP n 1 13 THR n 1 14 SER n 1 15 GLY n 1 16 VAL n 1 17 ILE n 1 18 LYS n 1 19 MET n 1 20 ALA n 1 21 VAL n 1 22 LYS n 1 23 PHE n 1 24 ASP n 1 25 ARG n 1 26 ARG n 1 27 ALA n 1 28 TYR n 1 29 PRO n 1 30 ALA n 1 31 GLN n 1 32 ILE n 1 33 THR n 1 34 PRO n 1 35 LYS n 1 36 MET n 1 37 CYS n 1 38 LEU n 1 39 LEU n 1 40 GLU n 1 41 TRP n 1 42 CYS n 1 43 ARG n 1 44 ARG n 1 45 GLU n 1 46 LYS n 1 47 LEU n 1 48 ALA n 1 49 GLN n 1 50 PRO n 1 51 VAL n 1 52 TYR n 1 53 GLU n 1 54 THR n 1 55 VAL n 1 56 GLN n 1 57 ARG n 1 58 PRO n 1 59 LEU n 1 60 ASP n 1 61 ARG n 1 62 LEU n 1 63 PHE n 1 64 SER n 1 65 SER n 1 66 ILE n 1 67 VAL n 1 68 THR n 1 69 VAL n 1 70 ALA n 1 71 GLU n 1 72 GLN n 1 73 LYS n 1 74 TYR n 1 75 GLN n 1 76 SER n 1 77 THR n 1 78 LEU n 1 79 TRP n 1 80 ASP n 1 81 LYS n 1 82 SER n 1 83 LYS n 1 84 LYS n 1 85 LEU n 1 86 ALA n 1 87 GLU n 1 88 GLN n 1 89 ALA n 1 90 ALA n 1 91 ALA n 1 92 ILE n 1 93 VAL n 1 94 CYS n 1 95 LEU n 1 96 ARG n 1 97 SER n 1 98 GLN n 1 99 GLY n 1 100 LEU n 1 101 PRO n 1 102 GLU n 1 103 GLY n 1 104 ARG n 1 105 LEU n 1 106 GLY n 1 107 GLU n 1 108 GLU n 1 109 SER n 1 110 PRO n 1 111 SER n 1 112 LEU n 1 113 HIS n 1 114 LYS n 1 115 HIS n 1 116 HIS n 1 117 HIS n 1 118 HIS n 1 119 HIS n 1 120 HIS n 2 1 C n 2 2 G n 2 3 A n 2 4 A n 2 5 C n 2 6 U n 2 7 U n 2 8 C n 2 9 G n 2 10 C n 2 11 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 120 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DUS2, DUS2L' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET11d _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 337 ? ? ? A . n A 1 2 THR 2 338 ? ? ? A . n A 1 3 SER 3 339 ? ? ? A . n A 1 4 GLU 4 340 ? ? ? A . n A 1 5 GLN 5 341 ? ? ? A . n A 1 6 THR 6 342 ? ? ? A . n A 1 7 GLY 7 343 ? ? ? A . n A 1 8 GLU 8 344 ? ? ? A . n A 1 9 PRO 9 345 ? ? ? A . n A 1 10 ALA 10 346 ? ? ? A . n A 1 11 GLU 11 347 ? ? ? A . n A 1 12 ASP 12 348 ? ? ? A . n A 1 13 THR 13 349 ? ? ? A . n A 1 14 SER 14 350 ? ? ? A . n A 1 15 GLY 15 351 351 GLY GLY A . n A 1 16 VAL 16 352 352 VAL VAL A . n A 1 17 ILE 17 353 353 ILE ILE A . n A 1 18 LYS 18 354 354 LYS LYS A . n A 1 19 MET 19 355 355 MET MET A . n A 1 20 ALA 20 356 356 ALA ALA A . n A 1 21 VAL 21 357 357 VAL VAL A . n A 1 22 LYS 22 358 358 LYS LYS A . n A 1 23 PHE 23 359 359 PHE PHE A . n A 1 24 ASP 24 360 360 ASP ASP A . n A 1 25 ARG 25 361 361 ARG ARG A . n A 1 26 ARG 26 362 362 ARG ARG A . n A 1 27 ALA 27 363 363 ALA ALA A . n A 1 28 TYR 28 364 364 TYR TYR A . n A 1 29 PRO 29 365 365 PRO PRO A . n A 1 30 ALA 30 366 366 ALA ALA A . n A 1 31 GLN 31 367 367 GLN GLN A . n A 1 32 ILE 32 368 368 ILE ILE A . n A 1 33 THR 33 369 369 THR THR A . n A 1 34 PRO 34 370 370 PRO PRO A . n A 1 35 LYS 35 371 371 LYS LYS A . n A 1 36 MET 36 372 372 MET MET A . n A 1 37 CYS 37 373 373 CYS CYS A . n A 1 38 LEU 38 374 374 LEU LEU A . n A 1 39 LEU 39 375 375 LEU LEU A . n A 1 40 GLU 40 376 376 GLU GLU A . n A 1 41 TRP 41 377 377 TRP TRP A . n A 1 42 CYS 42 378 378 CYS CYS A . n A 1 43 ARG 43 379 379 ARG ARG A . n A 1 44 ARG 44 380 380 ARG ARG A . n A 1 45 GLU 45 381 381 GLU GLU A . n A 1 46 LYS 46 382 382 LYS LYS A . n A 1 47 LEU 47 383 383 LEU LEU A . n A 1 48 ALA 48 384 384 ALA ALA A . n A 1 49 GLN 49 385 385 GLN GLN A . n A 1 50 PRO 50 386 386 PRO PRO A . n A 1 51 VAL 51 387 387 VAL VAL A . n A 1 52 TYR 52 388 388 TYR TYR A . n A 1 53 GLU 53 389 389 GLU GLU A . n A 1 54 THR 54 390 390 THR THR A . n A 1 55 VAL 55 391 391 VAL VAL A . n A 1 56 GLN 56 392 392 GLN GLN A . n A 1 57 ARG 57 393 393 ARG ARG A . n A 1 58 PRO 58 394 394 PRO PRO A . n A 1 59 LEU 59 395 395 LEU LEU A . n A 1 60 ASP 60 396 396 ASP ASP A . n A 1 61 ARG 61 397 397 ARG ARG A . n A 1 62 LEU 62 398 398 LEU LEU A . n A 1 63 PHE 63 399 399 PHE PHE A . n A 1 64 SER 64 400 400 SER SER A . n A 1 65 SER 65 401 401 SER SER A . n A 1 66 ILE 66 402 402 ILE ILE A . n A 1 67 VAL 67 403 403 VAL VAL A . n A 1 68 THR 68 404 404 THR THR A . n A 1 69 VAL 69 405 405 VAL VAL A . n A 1 70 ALA 70 406 406 ALA ALA A . n A 1 71 GLU 71 407 407 GLU GLU A . n A 1 72 GLN 72 408 408 GLN GLN A . n A 1 73 LYS 73 409 409 LYS LYS A . n A 1 74 TYR 74 410 410 TYR TYR A . n A 1 75 GLN 75 411 411 GLN GLN A . n A 1 76 SER 76 412 412 SER SER A . n A 1 77 THR 77 413 413 THR THR A . n A 1 78 LEU 78 414 414 LEU LEU A . n A 1 79 TRP 79 415 415 TRP TRP A . n A 1 80 ASP 80 416 416 ASP ASP A . n A 1 81 LYS 81 417 417 LYS LYS A . n A 1 82 SER 82 418 418 SER SER A . n A 1 83 LYS 83 419 419 LYS LYS A . n A 1 84 LYS 84 420 420 LYS LYS A . n A 1 85 LEU 85 421 421 LEU LEU A . n A 1 86 ALA 86 422 422 ALA ALA A . n A 1 87 GLU 87 423 423 GLU GLU A . n A 1 88 GLN 88 424 424 GLN GLN A . n A 1 89 ALA 89 425 425 ALA ALA A . n A 1 90 ALA 90 426 426 ALA ALA A . n A 1 91 ALA 91 427 427 ALA ALA A . n A 1 92 ILE 92 428 428 ILE ILE A . n A 1 93 VAL 93 429 429 VAL VAL A . n A 1 94 CYS 94 430 430 CYS CYS A . n A 1 95 LEU 95 431 431 LEU LEU A . n A 1 96 ARG 96 432 432 ARG ARG A . n A 1 97 SER 97 433 433 SER SER A . n A 1 98 GLN 98 434 434 GLN GLN A . n A 1 99 GLY 99 435 435 GLY GLY A . n A 1 100 LEU 100 436 436 LEU LEU A . n A 1 101 PRO 101 437 437 PRO PRO A . n A 1 102 GLU 102 438 438 GLU GLU A . n A 1 103 GLY 103 439 439 GLY GLY A . n A 1 104 ARG 104 440 440 ARG ARG A . n A 1 105 LEU 105 441 ? ? ? A . n A 1 106 GLY 106 442 ? ? ? A . n A 1 107 GLU 107 443 ? ? ? A . n A 1 108 GLU 108 444 ? ? ? A . n A 1 109 SER 109 445 ? ? ? A . n A 1 110 PRO 110 446 ? ? ? A . n A 1 111 SER 111 447 ? ? ? A . n A 1 112 LEU 112 448 ? ? ? A . n A 1 113 HIS 113 449 ? ? ? A . n A 1 114 LYS 114 450 ? ? ? A . n A 1 115 HIS 115 451 ? ? ? A . n A 1 116 HIS 116 452 ? ? ? A . n A 1 117 HIS 117 453 ? ? ? A . n A 1 118 HIS 118 454 ? ? ? A . n A 1 119 HIS 119 455 ? ? ? A . n A 1 120 HIS 120 456 ? ? ? A . n B 2 1 C 1 1 1 C C B . n B 2 2 G 2 2 2 G G B . n B 2 3 A 3 3 3 A A B . n B 2 4 A 4 4 4 A A B . n B 2 5 C 5 5 5 C C B . n B 2 6 U 6 6 6 U U B . n B 2 7 U 7 7 7 U U B . n B 2 8 C 8 8 8 C C B . n B 2 9 G 9 9 9 G G B . n B 2 10 C 10 10 10 C C B . n B 2 11 G 11 11 11 G G B . n C 2 1 C 1 1 1 C C C . n C 2 2 G 2 2 2 G G C . n C 2 3 A 3 3 3 A A C . n C 2 4 A 4 4 4 A A C . n C 2 5 C 5 5 5 C C C . n C 2 6 U 6 6 6 U U C . n C 2 7 U 7 7 7 U U C . n C 2 8 C 8 8 8 C C C . n C 2 9 G 9 9 9 G G C . n C 2 10 C 10 10 10 C C C . n C 2 11 G 11 11 11 G G C . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 361 ? CG ? A ARG 25 CG 2 1 Y 1 A ARG 361 ? CD ? A ARG 25 CD 3 1 Y 1 A ARG 361 ? NE ? A ARG 25 NE 4 1 Y 1 A ARG 361 ? CZ ? A ARG 25 CZ 5 1 Y 1 A ARG 361 ? NH1 ? A ARG 25 NH1 6 1 Y 1 A ARG 361 ? NH2 ? A ARG 25 NH2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.3 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 5OC6 _cell.length_a 58.440 _cell.length_b 115.560 _cell.length_c 66.620 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OC6 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5OC6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.72 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;15% v/v isopropanol 20 mM MgCl2 50 mM MES ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-06-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98010 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98010 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 2' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate 100.05 _reflns.entry_id 5OC6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.2 _reflns.d_resolution_low 43.65 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3855 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.52 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.8 _reflns.pdbx_Rmerge_I_obs 0.3064 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.11 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.2 _reflns_shell.d_res_low 3.314 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.85 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 358 _reflns_shell.percent_possible_all 93.44 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.302 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5OC6 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 3855 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.65 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 97.7 _refine.ls_R_factor_obs 0.228 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.226 _refine.ls_R_factor_R_free 0.242 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.860 _refine.ls_number_reflns_R_free 380 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.926 _refine.correlation_coeff_Fo_to_Fc_free 0.917 _refine.B_iso_mean 99.32 _refine.aniso_B[1][1] 11.53310 _refine.aniso_B[2][2] -8.56830 _refine.aniso_B[3][3] -2.96490 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 4wft _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI 0.438 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 5OC6 _refine_analyze.Luzzati_coordinate_error_obs 0.53 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 718 _refine_hist.pdbx_number_atoms_nucleic_acid 468 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1186 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 43.65 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.008 ? 2.00 1251 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 0.85 ? 2.00 1794 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 360 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 16 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 125 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 1251 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 2.40 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 21.85 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 183 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1416 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low 3.58 _refine_ls_shell.number_reflns_R_work 940 _refine_ls_shell.R_factor_R_work 0.2417 _refine_ls_shell.percent_reflns_obs 95.50 _refine_ls_shell.R_factor_R_free 0.2660 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 9.62 _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_all 1040 _refine_ls_shell.R_factor_all 0.2438 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5OC6 _struct.title 'Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD in complex with a 22 nucleotide dsRNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5OC6 _struct_keywords.text 'double-stranded RNA-binding domain protein-RNA complex dsRNA, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP DUS2L_HUMAN Q9NX74 ? 1 ;TSEQTGEPAEDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDK SKKLAEQAAAIVCLRSQGLPEGRLGEESPSLHK ; 338 2 PDB 5OC6 5OC6 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5OC6 A 2 ? 114 ? Q9NX74 338 ? 450 ? 338 450 2 2 5OC6 B 1 ? 11 ? 5OC6 1 ? 11 ? 1 11 3 2 5OC6 C 1 ? 11 ? 5OC6 1 ? 11 ? 1 11 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5OC6 MET A 1 ? UNP Q9NX74 ? ? 'initiating methionine' 337 1 1 5OC6 HIS A 115 ? UNP Q9NX74 ? ? 'expression tag' 451 2 1 5OC6 HIS A 116 ? UNP Q9NX74 ? ? 'expression tag' 452 3 1 5OC6 HIS A 117 ? UNP Q9NX74 ? ? 'expression tag' 453 4 1 5OC6 HIS A 118 ? UNP Q9NX74 ? ? 'expression tag' 454 5 1 5OC6 HIS A 119 ? UNP Q9NX74 ? ? 'expression tag' 455 6 1 5OC6 HIS A 120 ? UNP Q9NX74 ? ? 'expression tag' 456 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2180 ? 1 MORE -18 ? 1 'SSA (A^2)' 8850 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 24 ? TYR A 28 ? ASP A 360 TYR A 364 5 ? 5 HELX_P HELX_P2 AA2 THR A 33 ? GLU A 45 ? THR A 369 GLU A 381 1 ? 13 HELX_P HELX_P3 AA3 SER A 82 ? GLN A 98 ? SER A 418 GLN A 434 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B C 1 N3 ? ? ? 1_555 C G 9 N1 ? ? B C 1 C G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B C 1 N4 ? ? ? 1_555 C G 9 O6 ? ? B C 1 C G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B C 1 O2 ? ? ? 1_555 C G 9 N2 ? ? B C 1 C G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 C C 8 N3 ? ? B G 2 C C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 C C 8 O2 ? ? B G 2 C C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 C C 8 N4 ? ? B G 2 C C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 3 N1 ? ? ? 1_555 C U 7 N3 ? ? B A 3 C U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B A 3 N6 ? ? ? 1_555 C U 7 O4 ? ? B A 3 C U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B A 4 N1 ? ? ? 1_555 C U 6 N3 ? ? B A 4 C U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B A 4 N6 ? ? ? 1_555 C U 6 O4 ? ? B A 4 C U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B U 6 N3 ? ? ? 1_555 C A 4 N1 ? ? B U 6 C A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B U 6 O4 ? ? ? 1_555 C A 4 N6 ? ? B U 6 C A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B U 7 N3 ? ? ? 1_555 C A 3 N1 ? ? B U 7 C A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B U 7 O4 ? ? ? 1_555 C A 3 N6 ? ? B U 7 C A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B C 8 N3 ? ? ? 1_555 C G 2 N1 ? ? B C 8 C G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B C 8 N4 ? ? ? 1_555 C G 2 O6 ? ? B C 8 C G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B C 8 O2 ? ? ? 1_555 C G 2 N2 ? ? B C 8 C G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B G 9 N1 ? ? ? 1_555 C C 1 N3 ? ? B G 9 C C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B G 9 N2 ? ? ? 1_555 C C 1 O2 ? ? B G 9 C C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B G 9 O6 ? ? ? 1_555 C C 1 N4 ? ? B G 9 C C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 16 ? MET A 19 ? VAL A 352 MET A 355 AA1 2 GLN A 72 ? SER A 76 ? GLN A 408 SER A 412 AA1 3 PHE A 63 ? VAL A 69 ? PHE A 399 VAL A 405 AA1 4 VAL A 51 ? GLN A 56 ? VAL A 387 GLN A 392 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 17 ? N ILE A 353 O LYS A 73 ? O LYS A 409 AA1 2 3 O TYR A 74 ? O TYR A 410 N VAL A 67 ? N VAL A 403 AA1 3 4 O THR A 68 ? O THR A 404 N VAL A 51 ? N VAL A 387 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P B C 1 ? ? OP3 B C 1 ? ? 1.476 1.607 -0.131 0.012 N 2 1 P C C 1 ? ? OP3 C C 1 ? ? 1.480 1.607 -0.127 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 B C 1 ? ? P B C 1 ? ? OP2 B C 1 ? ? 110.19 119.60 -9.41 1.50 N 2 1 OP1 C C 1 ? ? P C C 1 ? ? OP2 C C 1 ? ? 109.88 119.60 -9.72 1.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 384 ? ? -41.73 -104.31 2 1 GLN A 385 ? ? -175.91 138.85 3 1 LEU A 395 ? ? -64.06 -80.17 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -12.7472 -11.0038 5.8448 -0.0181 0.0703 -0.2308 0.0449 -0.1095 0.0555 6.6991 8.3154 5.6330 2.6646 -1.2742 -2.4712 0.0000 0.4908 -0.1577 0.1106 0.5442 -0.3081 0.2577 -0.5442 -0.5442 'X-RAY DIFFRACTION' 2 ? refined -13.9277 -27.7193 16.0777 0.0133 0.1798 0.0654 -0.0442 -0.1520 0.0709 0.0000 0.1894 0.8125 0.5523 -2.9104 0.3085 -0.1997 -0.1434 -0.4671 0.5442 0.2100 -0.3904 0.5442 0.2563 -0.0103 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '{ A|* }' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '{ B|* },{ C|* }' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 337 ? A MET 1 2 1 Y 1 A THR 338 ? A THR 2 3 1 Y 1 A SER 339 ? A SER 3 4 1 Y 1 A GLU 340 ? A GLU 4 5 1 Y 1 A GLN 341 ? A GLN 5 6 1 Y 1 A THR 342 ? A THR 6 7 1 Y 1 A GLY 343 ? A GLY 7 8 1 Y 1 A GLU 344 ? A GLU 8 9 1 Y 1 A PRO 345 ? A PRO 9 10 1 Y 1 A ALA 346 ? A ALA 10 11 1 Y 1 A GLU 347 ? A GLU 11 12 1 Y 1 A ASP 348 ? A ASP 12 13 1 Y 1 A THR 349 ? A THR 13 14 1 Y 1 A SER 350 ? A SER 14 15 1 Y 1 A LEU 441 ? A LEU 105 16 1 Y 1 A GLY 442 ? A GLY 106 17 1 Y 1 A GLU 443 ? A GLU 107 18 1 Y 1 A GLU 444 ? A GLU 108 19 1 Y 1 A SER 445 ? A SER 109 20 1 Y 1 A PRO 446 ? A PRO 110 21 1 Y 1 A SER 447 ? A SER 111 22 1 Y 1 A LEU 448 ? A LEU 112 23 1 Y 1 A HIS 449 ? A HIS 113 24 1 Y 1 A LYS 450 ? A LYS 114 25 1 Y 1 A HIS 451 ? A HIS 115 26 1 Y 1 A HIS 452 ? A HIS 116 27 1 Y 1 A HIS 453 ? A HIS 117 28 1 Y 1 A HIS 454 ? A HIS 118 29 1 Y 1 A HIS 455 ? A HIS 119 30 1 Y 1 A HIS 456 ? A HIS 120 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASP N N N N 78 ASP CA C N S 79 ASP C C N N 80 ASP O O N N 81 ASP CB C N N 82 ASP CG C N N 83 ASP OD1 O N N 84 ASP OD2 O N N 85 ASP OXT O N N 86 ASP H H N N 87 ASP H2 H N N 88 ASP HA H N N 89 ASP HB2 H N N 90 ASP HB3 H N N 91 ASP HD2 H N N 92 ASP HXT H N N 93 C OP3 O N N 94 C P P N N 95 C OP1 O N N 96 C OP2 O N N 97 C "O5'" O N N 98 C "C5'" C N N 99 C "C4'" C N R 100 C "O4'" O N N 101 C "C3'" C N S 102 C "O3'" O N N 103 C "C2'" C N R 104 C "O2'" O N N 105 C "C1'" C N R 106 C N1 N N N 107 C C2 C N N 108 C O2 O N N 109 C N3 N N N 110 C C4 C N N 111 C N4 N N N 112 C C5 C N N 113 C C6 C N N 114 C HOP3 H N N 115 C HOP2 H N N 116 C "H5'" H N N 117 C "H5''" H N N 118 C "H4'" H N N 119 C "H3'" H N N 120 C "HO3'" H N N 121 C "H2'" H N N 122 C "HO2'" H N N 123 C "H1'" H N N 124 C H41 H N N 125 C H42 H N N 126 C H5 H N N 127 C H6 H N N 128 CYS N N N N 129 CYS CA C N R 130 CYS C C N N 131 CYS O O N N 132 CYS CB C N N 133 CYS SG S N N 134 CYS OXT O N N 135 CYS H H N N 136 CYS H2 H N N 137 CYS HA H N N 138 CYS HB2 H N N 139 CYS HB3 H N N 140 CYS HG H N N 141 CYS HXT H N N 142 G OP3 O N N 143 G P P N N 144 G OP1 O N N 145 G OP2 O N N 146 G "O5'" O N N 147 G "C5'" C N N 148 G "C4'" C N R 149 G "O4'" O N N 150 G "C3'" C N S 151 G "O3'" O N N 152 G "C2'" C N R 153 G "O2'" O N N 154 G "C1'" C N R 155 G N9 N Y N 156 G C8 C Y N 157 G N7 N Y N 158 G C5 C Y N 159 G C6 C N N 160 G O6 O N N 161 G N1 N N N 162 G C2 C N N 163 G N2 N N N 164 G N3 N N N 165 G C4 C Y N 166 G HOP3 H N N 167 G HOP2 H N N 168 G "H5'" H N N 169 G "H5''" H N N 170 G "H4'" H N N 171 G "H3'" H N N 172 G "HO3'" H N N 173 G "H2'" H N N 174 G "HO2'" H N N 175 G "H1'" H N N 176 G H8 H N N 177 G H1 H N N 178 G H21 H N N 179 G H22 H N N 180 GLN N N N N 181 GLN CA C N S 182 GLN C C N N 183 GLN O O N N 184 GLN CB C N N 185 GLN CG C N N 186 GLN CD C N N 187 GLN OE1 O N N 188 GLN NE2 N N N 189 GLN OXT O N N 190 GLN H H N N 191 GLN H2 H N N 192 GLN HA H N N 193 GLN HB2 H N N 194 GLN HB3 H N N 195 GLN HG2 H N N 196 GLN HG3 H N N 197 GLN HE21 H N N 198 GLN HE22 H N N 199 GLN HXT H N N 200 GLU N N N N 201 GLU CA C N S 202 GLU C C N N 203 GLU O O N N 204 GLU CB C N N 205 GLU CG C N N 206 GLU CD C N N 207 GLU OE1 O N N 208 GLU OE2 O N N 209 GLU OXT O N N 210 GLU H H N N 211 GLU H2 H N N 212 GLU HA H N N 213 GLU HB2 H N N 214 GLU HB3 H N N 215 GLU HG2 H N N 216 GLU HG3 H N N 217 GLU HE2 H N N 218 GLU HXT H N N 219 GLY N N N N 220 GLY CA C N N 221 GLY C C N N 222 GLY O O N N 223 GLY OXT O N N 224 GLY H H N N 225 GLY H2 H N N 226 GLY HA2 H N N 227 GLY HA3 H N N 228 GLY HXT H N N 229 HIS N N N N 230 HIS CA C N S 231 HIS C C N N 232 HIS O O N N 233 HIS CB C N N 234 HIS CG C Y N 235 HIS ND1 N Y N 236 HIS CD2 C Y N 237 HIS CE1 C Y N 238 HIS NE2 N Y N 239 HIS OXT O N N 240 HIS H H N N 241 HIS H2 H N N 242 HIS HA H N N 243 HIS HB2 H N N 244 HIS HB3 H N N 245 HIS HD1 H N N 246 HIS HD2 H N N 247 HIS HE1 H N N 248 HIS HE2 H N N 249 HIS HXT H N N 250 ILE N N N N 251 ILE CA C N S 252 ILE C C N N 253 ILE O O N N 254 ILE CB C N S 255 ILE CG1 C N N 256 ILE CG2 C N N 257 ILE CD1 C N N 258 ILE OXT O N N 259 ILE H H N N 260 ILE H2 H N N 261 ILE HA H N N 262 ILE HB H N N 263 ILE HG12 H N N 264 ILE HG13 H N N 265 ILE HG21 H N N 266 ILE HG22 H N N 267 ILE HG23 H N N 268 ILE HD11 H N N 269 ILE HD12 H N N 270 ILE HD13 H N N 271 ILE HXT H N N 272 LEU N N N N 273 LEU CA C N S 274 LEU C C N N 275 LEU O O N N 276 LEU CB C N N 277 LEU CG C N N 278 LEU CD1 C N N 279 LEU CD2 C N N 280 LEU OXT O N N 281 LEU H H N N 282 LEU H2 H N N 283 LEU HA H N N 284 LEU HB2 H N N 285 LEU HB3 H N N 286 LEU HG H N N 287 LEU HD11 H N N 288 LEU HD12 H N N 289 LEU HD13 H N N 290 LEU HD21 H N N 291 LEU HD22 H N N 292 LEU HD23 H N N 293 LEU HXT H N N 294 LYS N N N N 295 LYS CA C N S 296 LYS C C N N 297 LYS O O N N 298 LYS CB C N N 299 LYS CG C N N 300 LYS CD C N N 301 LYS CE C N N 302 LYS NZ N N N 303 LYS OXT O N N 304 LYS H H N N 305 LYS H2 H N N 306 LYS HA H N N 307 LYS HB2 H N N 308 LYS HB3 H N N 309 LYS HG2 H N N 310 LYS HG3 H N N 311 LYS HD2 H N N 312 LYS HD3 H N N 313 LYS HE2 H N N 314 LYS HE3 H N N 315 LYS HZ1 H N N 316 LYS HZ2 H N N 317 LYS HZ3 H N N 318 LYS HXT H N N 319 MET N N N N 320 MET CA C N S 321 MET C C N N 322 MET O O N N 323 MET CB C N N 324 MET CG C N N 325 MET SD S N N 326 MET CE C N N 327 MET OXT O N N 328 MET H H N N 329 MET H2 H N N 330 MET HA H N N 331 MET HB2 H N N 332 MET HB3 H N N 333 MET HG2 H N N 334 MET HG3 H N N 335 MET HE1 H N N 336 MET HE2 H N N 337 MET HE3 H N N 338 MET HXT H N N 339 PHE N N N N 340 PHE CA C N S 341 PHE C C N N 342 PHE O O N N 343 PHE CB C N N 344 PHE CG C Y N 345 PHE CD1 C Y N 346 PHE CD2 C Y N 347 PHE CE1 C Y N 348 PHE CE2 C Y N 349 PHE CZ C Y N 350 PHE OXT O N N 351 PHE H H N N 352 PHE H2 H N N 353 PHE HA H N N 354 PHE HB2 H N N 355 PHE HB3 H N N 356 PHE HD1 H N N 357 PHE HD2 H N N 358 PHE HE1 H N N 359 PHE HE2 H N N 360 PHE HZ H N N 361 PHE HXT H N N 362 PRO N N N N 363 PRO CA C N S 364 PRO C C N N 365 PRO O O N N 366 PRO CB C N N 367 PRO CG C N N 368 PRO CD C N N 369 PRO OXT O N N 370 PRO H H N N 371 PRO HA H N N 372 PRO HB2 H N N 373 PRO HB3 H N N 374 PRO HG2 H N N 375 PRO HG3 H N N 376 PRO HD2 H N N 377 PRO HD3 H N N 378 PRO HXT H N N 379 SER N N N N 380 SER CA C N S 381 SER C C N N 382 SER O O N N 383 SER CB C N N 384 SER OG O N N 385 SER OXT O N N 386 SER H H N N 387 SER H2 H N N 388 SER HA H N N 389 SER HB2 H N N 390 SER HB3 H N N 391 SER HG H N N 392 SER HXT H N N 393 THR N N N N 394 THR CA C N S 395 THR C C N N 396 THR O O N N 397 THR CB C N R 398 THR OG1 O N N 399 THR CG2 C N N 400 THR OXT O N N 401 THR H H N N 402 THR H2 H N N 403 THR HA H N N 404 THR HB H N N 405 THR HG1 H N N 406 THR HG21 H N N 407 THR HG22 H N N 408 THR HG23 H N N 409 THR HXT H N N 410 TRP N N N N 411 TRP CA C N S 412 TRP C C N N 413 TRP O O N N 414 TRP CB C N N 415 TRP CG C Y N 416 TRP CD1 C Y N 417 TRP CD2 C Y N 418 TRP NE1 N Y N 419 TRP CE2 C Y N 420 TRP CE3 C Y N 421 TRP CZ2 C Y N 422 TRP CZ3 C Y N 423 TRP CH2 C Y N 424 TRP OXT O N N 425 TRP H H N N 426 TRP H2 H N N 427 TRP HA H N N 428 TRP HB2 H N N 429 TRP HB3 H N N 430 TRP HD1 H N N 431 TRP HE1 H N N 432 TRP HE3 H N N 433 TRP HZ2 H N N 434 TRP HZ3 H N N 435 TRP HH2 H N N 436 TRP HXT H N N 437 TYR N N N N 438 TYR CA C N S 439 TYR C C N N 440 TYR O O N N 441 TYR CB C N N 442 TYR CG C Y N 443 TYR CD1 C Y N 444 TYR CD2 C Y N 445 TYR CE1 C Y N 446 TYR CE2 C Y N 447 TYR CZ C Y N 448 TYR OH O N N 449 TYR OXT O N N 450 TYR H H N N 451 TYR H2 H N N 452 TYR HA H N N 453 TYR HB2 H N N 454 TYR HB3 H N N 455 TYR HD1 H N N 456 TYR HD2 H N N 457 TYR HE1 H N N 458 TYR HE2 H N N 459 TYR HH H N N 460 TYR HXT H N N 461 U OP3 O N N 462 U P P N N 463 U OP1 O N N 464 U OP2 O N N 465 U "O5'" O N N 466 U "C5'" C N N 467 U "C4'" C N R 468 U "O4'" O N N 469 U "C3'" C N S 470 U "O3'" O N N 471 U "C2'" C N R 472 U "O2'" O N N 473 U "C1'" C N R 474 U N1 N N N 475 U C2 C N N 476 U O2 O N N 477 U N3 N N N 478 U C4 C N N 479 U O4 O N N 480 U C5 C N N 481 U C6 C N N 482 U HOP3 H N N 483 U HOP2 H N N 484 U "H5'" H N N 485 U "H5''" H N N 486 U "H4'" H N N 487 U "H3'" H N N 488 U "HO3'" H N N 489 U "H2'" H N N 490 U "HO2'" H N N 491 U "H1'" H N N 492 U H3 H N N 493 U H5 H N N 494 U H6 H N N 495 VAL N N N N 496 VAL CA C N S 497 VAL C C N N 498 VAL O O N N 499 VAL CB C N N 500 VAL CG1 C N N 501 VAL CG2 C N N 502 VAL OXT O N N 503 VAL H H N N 504 VAL H2 H N N 505 VAL HA H N N 506 VAL HB H N N 507 VAL HG11 H N N 508 VAL HG12 H N N 509 VAL HG13 H N N 510 VAL HG21 H N N 511 VAL HG22 H N N 512 VAL HG23 H N N 513 VAL HXT H N N 514 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASP N CA sing N N 78 ASP N H sing N N 79 ASP N H2 sing N N 80 ASP CA C sing N N 81 ASP CA CB sing N N 82 ASP CA HA sing N N 83 ASP C O doub N N 84 ASP C OXT sing N N 85 ASP CB CG sing N N 86 ASP CB HB2 sing N N 87 ASP CB HB3 sing N N 88 ASP CG OD1 doub N N 89 ASP CG OD2 sing N N 90 ASP OD2 HD2 sing N N 91 ASP OXT HXT sing N N 92 C OP3 P sing N N 93 C OP3 HOP3 sing N N 94 C P OP1 doub N N 95 C P OP2 sing N N 96 C P "O5'" sing N N 97 C OP2 HOP2 sing N N 98 C "O5'" "C5'" sing N N 99 C "C5'" "C4'" sing N N 100 C "C5'" "H5'" sing N N 101 C "C5'" "H5''" sing N N 102 C "C4'" "O4'" sing N N 103 C "C4'" "C3'" sing N N 104 C "C4'" "H4'" sing N N 105 C "O4'" "C1'" sing N N 106 C "C3'" "O3'" sing N N 107 C "C3'" "C2'" sing N N 108 C "C3'" "H3'" sing N N 109 C "O3'" "HO3'" sing N N 110 C "C2'" "O2'" sing N N 111 C "C2'" "C1'" sing N N 112 C "C2'" "H2'" sing N N 113 C "O2'" "HO2'" sing N N 114 C "C1'" N1 sing N N 115 C "C1'" "H1'" sing N N 116 C N1 C2 sing N N 117 C N1 C6 sing N N 118 C C2 O2 doub N N 119 C C2 N3 sing N N 120 C N3 C4 doub N N 121 C C4 N4 sing N N 122 C C4 C5 sing N N 123 C N4 H41 sing N N 124 C N4 H42 sing N N 125 C C5 C6 doub N N 126 C C5 H5 sing N N 127 C C6 H6 sing N N 128 CYS N CA sing N N 129 CYS N H sing N N 130 CYS N H2 sing N N 131 CYS CA C sing N N 132 CYS CA CB sing N N 133 CYS CA HA sing N N 134 CYS C O doub N N 135 CYS C OXT sing N N 136 CYS CB SG sing N N 137 CYS CB HB2 sing N N 138 CYS CB HB3 sing N N 139 CYS SG HG sing N N 140 CYS OXT HXT sing N N 141 G OP3 P sing N N 142 G OP3 HOP3 sing N N 143 G P OP1 doub N N 144 G P OP2 sing N N 145 G P "O5'" sing N N 146 G OP2 HOP2 sing N N 147 G "O5'" "C5'" sing N N 148 G "C5'" "C4'" sing N N 149 G "C5'" "H5'" sing N N 150 G "C5'" "H5''" sing N N 151 G "C4'" "O4'" sing N N 152 G "C4'" "C3'" sing N N 153 G "C4'" "H4'" sing N N 154 G "O4'" "C1'" sing N N 155 G "C3'" "O3'" sing N N 156 G "C3'" "C2'" sing N N 157 G "C3'" "H3'" sing N N 158 G "O3'" "HO3'" sing N N 159 G "C2'" "O2'" sing N N 160 G "C2'" "C1'" sing N N 161 G "C2'" "H2'" sing N N 162 G "O2'" "HO2'" sing N N 163 G "C1'" N9 sing N N 164 G "C1'" "H1'" sing N N 165 G N9 C8 sing Y N 166 G N9 C4 sing Y N 167 G C8 N7 doub Y N 168 G C8 H8 sing N N 169 G N7 C5 sing Y N 170 G C5 C6 sing N N 171 G C5 C4 doub Y N 172 G C6 O6 doub N N 173 G C6 N1 sing N N 174 G N1 C2 sing N N 175 G N1 H1 sing N N 176 G C2 N2 sing N N 177 G C2 N3 doub N N 178 G N2 H21 sing N N 179 G N2 H22 sing N N 180 G N3 C4 sing N N 181 GLN N CA sing N N 182 GLN N H sing N N 183 GLN N H2 sing N N 184 GLN CA C sing N N 185 GLN CA CB sing N N 186 GLN CA HA sing N N 187 GLN C O doub N N 188 GLN C OXT sing N N 189 GLN CB CG sing N N 190 GLN CB HB2 sing N N 191 GLN CB HB3 sing N N 192 GLN CG CD sing N N 193 GLN CG HG2 sing N N 194 GLN CG HG3 sing N N 195 GLN CD OE1 doub N N 196 GLN CD NE2 sing N N 197 GLN NE2 HE21 sing N N 198 GLN NE2 HE22 sing N N 199 GLN OXT HXT sing N N 200 GLU N CA sing N N 201 GLU N H sing N N 202 GLU N H2 sing N N 203 GLU CA C sing N N 204 GLU CA CB sing N N 205 GLU CA HA sing N N 206 GLU C O doub N N 207 GLU C OXT sing N N 208 GLU CB CG sing N N 209 GLU CB HB2 sing N N 210 GLU CB HB3 sing N N 211 GLU CG CD sing N N 212 GLU CG HG2 sing N N 213 GLU CG HG3 sing N N 214 GLU CD OE1 doub N N 215 GLU CD OE2 sing N N 216 GLU OE2 HE2 sing N N 217 GLU OXT HXT sing N N 218 GLY N CA sing N N 219 GLY N H sing N N 220 GLY N H2 sing N N 221 GLY CA C sing N N 222 GLY CA HA2 sing N N 223 GLY CA HA3 sing N N 224 GLY C O doub N N 225 GLY C OXT sing N N 226 GLY OXT HXT sing N N 227 HIS N CA sing N N 228 HIS N H sing N N 229 HIS N H2 sing N N 230 HIS CA C sing N N 231 HIS CA CB sing N N 232 HIS CA HA sing N N 233 HIS C O doub N N 234 HIS C OXT sing N N 235 HIS CB CG sing N N 236 HIS CB HB2 sing N N 237 HIS CB HB3 sing N N 238 HIS CG ND1 sing Y N 239 HIS CG CD2 doub Y N 240 HIS ND1 CE1 doub Y N 241 HIS ND1 HD1 sing N N 242 HIS CD2 NE2 sing Y N 243 HIS CD2 HD2 sing N N 244 HIS CE1 NE2 sing Y N 245 HIS CE1 HE1 sing N N 246 HIS NE2 HE2 sing N N 247 HIS OXT HXT sing N N 248 ILE N CA sing N N 249 ILE N H sing N N 250 ILE N H2 sing N N 251 ILE CA C sing N N 252 ILE CA CB sing N N 253 ILE CA HA sing N N 254 ILE C O doub N N 255 ILE C OXT sing N N 256 ILE CB CG1 sing N N 257 ILE CB CG2 sing N N 258 ILE CB HB sing N N 259 ILE CG1 CD1 sing N N 260 ILE CG1 HG12 sing N N 261 ILE CG1 HG13 sing N N 262 ILE CG2 HG21 sing N N 263 ILE CG2 HG22 sing N N 264 ILE CG2 HG23 sing N N 265 ILE CD1 HD11 sing N N 266 ILE CD1 HD12 sing N N 267 ILE CD1 HD13 sing N N 268 ILE OXT HXT sing N N 269 LEU N CA sing N N 270 LEU N H sing N N 271 LEU N H2 sing N N 272 LEU CA C sing N N 273 LEU CA CB sing N N 274 LEU CA HA sing N N 275 LEU C O doub N N 276 LEU C OXT sing N N 277 LEU CB CG sing N N 278 LEU CB HB2 sing N N 279 LEU CB HB3 sing N N 280 LEU CG CD1 sing N N 281 LEU CG CD2 sing N N 282 LEU CG HG sing N N 283 LEU CD1 HD11 sing N N 284 LEU CD1 HD12 sing N N 285 LEU CD1 HD13 sing N N 286 LEU CD2 HD21 sing N N 287 LEU CD2 HD22 sing N N 288 LEU CD2 HD23 sing N N 289 LEU OXT HXT sing N N 290 LYS N CA sing N N 291 LYS N H sing N N 292 LYS N H2 sing N N 293 LYS CA C sing N N 294 LYS CA CB sing N N 295 LYS CA HA sing N N 296 LYS C O doub N N 297 LYS C OXT sing N N 298 LYS CB CG sing N N 299 LYS CB HB2 sing N N 300 LYS CB HB3 sing N N 301 LYS CG CD sing N N 302 LYS CG HG2 sing N N 303 LYS CG HG3 sing N N 304 LYS CD CE sing N N 305 LYS CD HD2 sing N N 306 LYS CD HD3 sing N N 307 LYS CE NZ sing N N 308 LYS CE HE2 sing N N 309 LYS CE HE3 sing N N 310 LYS NZ HZ1 sing N N 311 LYS NZ HZ2 sing N N 312 LYS NZ HZ3 sing N N 313 LYS OXT HXT sing N N 314 MET N CA sing N N 315 MET N H sing N N 316 MET N H2 sing N N 317 MET CA C sing N N 318 MET CA CB sing N N 319 MET CA HA sing N N 320 MET C O doub N N 321 MET C OXT sing N N 322 MET CB CG sing N N 323 MET CB HB2 sing N N 324 MET CB HB3 sing N N 325 MET CG SD sing N N 326 MET CG HG2 sing N N 327 MET CG HG3 sing N N 328 MET SD CE sing N N 329 MET CE HE1 sing N N 330 MET CE HE2 sing N N 331 MET CE HE3 sing N N 332 MET OXT HXT sing N N 333 PHE N CA sing N N 334 PHE N H sing N N 335 PHE N H2 sing N N 336 PHE CA C sing N N 337 PHE CA CB sing N N 338 PHE CA HA sing N N 339 PHE C O doub N N 340 PHE C OXT sing N N 341 PHE CB CG sing N N 342 PHE CB HB2 sing N N 343 PHE CB HB3 sing N N 344 PHE CG CD1 doub Y N 345 PHE CG CD2 sing Y N 346 PHE CD1 CE1 sing Y N 347 PHE CD1 HD1 sing N N 348 PHE CD2 CE2 doub Y N 349 PHE CD2 HD2 sing N N 350 PHE CE1 CZ doub Y N 351 PHE CE1 HE1 sing N N 352 PHE CE2 CZ sing Y N 353 PHE CE2 HE2 sing N N 354 PHE CZ HZ sing N N 355 PHE OXT HXT sing N N 356 PRO N CA sing N N 357 PRO N CD sing N N 358 PRO N H sing N N 359 PRO CA C sing N N 360 PRO CA CB sing N N 361 PRO CA HA sing N N 362 PRO C O doub N N 363 PRO C OXT sing N N 364 PRO CB CG sing N N 365 PRO CB HB2 sing N N 366 PRO CB HB3 sing N N 367 PRO CG CD sing N N 368 PRO CG HG2 sing N N 369 PRO CG HG3 sing N N 370 PRO CD HD2 sing N N 371 PRO CD HD3 sing N N 372 PRO OXT HXT sing N N 373 SER N CA sing N N 374 SER N H sing N N 375 SER N H2 sing N N 376 SER CA C sing N N 377 SER CA CB sing N N 378 SER CA HA sing N N 379 SER C O doub N N 380 SER C OXT sing N N 381 SER CB OG sing N N 382 SER CB HB2 sing N N 383 SER CB HB3 sing N N 384 SER OG HG sing N N 385 SER OXT HXT sing N N 386 THR N CA sing N N 387 THR N H sing N N 388 THR N H2 sing N N 389 THR CA C sing N N 390 THR CA CB sing N N 391 THR CA HA sing N N 392 THR C O doub N N 393 THR C OXT sing N N 394 THR CB OG1 sing N N 395 THR CB CG2 sing N N 396 THR CB HB sing N N 397 THR OG1 HG1 sing N N 398 THR CG2 HG21 sing N N 399 THR CG2 HG22 sing N N 400 THR CG2 HG23 sing N N 401 THR OXT HXT sing N N 402 TRP N CA sing N N 403 TRP N H sing N N 404 TRP N H2 sing N N 405 TRP CA C sing N N 406 TRP CA CB sing N N 407 TRP CA HA sing N N 408 TRP C O doub N N 409 TRP C OXT sing N N 410 TRP CB CG sing N N 411 TRP CB HB2 sing N N 412 TRP CB HB3 sing N N 413 TRP CG CD1 doub Y N 414 TRP CG CD2 sing Y N 415 TRP CD1 NE1 sing Y N 416 TRP CD1 HD1 sing N N 417 TRP CD2 CE2 doub Y N 418 TRP CD2 CE3 sing Y N 419 TRP NE1 CE2 sing Y N 420 TRP NE1 HE1 sing N N 421 TRP CE2 CZ2 sing Y N 422 TRP CE3 CZ3 doub Y N 423 TRP CE3 HE3 sing N N 424 TRP CZ2 CH2 doub Y N 425 TRP CZ2 HZ2 sing N N 426 TRP CZ3 CH2 sing Y N 427 TRP CZ3 HZ3 sing N N 428 TRP CH2 HH2 sing N N 429 TRP OXT HXT sing N N 430 TYR N CA sing N N 431 TYR N H sing N N 432 TYR N H2 sing N N 433 TYR CA C sing N N 434 TYR CA CB sing N N 435 TYR CA HA sing N N 436 TYR C O doub N N 437 TYR C OXT sing N N 438 TYR CB CG sing N N 439 TYR CB HB2 sing N N 440 TYR CB HB3 sing N N 441 TYR CG CD1 doub Y N 442 TYR CG CD2 sing Y N 443 TYR CD1 CE1 sing Y N 444 TYR CD1 HD1 sing N N 445 TYR CD2 CE2 doub Y N 446 TYR CD2 HD2 sing N N 447 TYR CE1 CZ doub Y N 448 TYR CE1 HE1 sing N N 449 TYR CE2 CZ sing Y N 450 TYR CE2 HE2 sing N N 451 TYR CZ OH sing N N 452 TYR OH HH sing N N 453 TYR OXT HXT sing N N 454 U OP3 P sing N N 455 U OP3 HOP3 sing N N 456 U P OP1 doub N N 457 U P OP2 sing N N 458 U P "O5'" sing N N 459 U OP2 HOP2 sing N N 460 U "O5'" "C5'" sing N N 461 U "C5'" "C4'" sing N N 462 U "C5'" "H5'" sing N N 463 U "C5'" "H5''" sing N N 464 U "C4'" "O4'" sing N N 465 U "C4'" "C3'" sing N N 466 U "C4'" "H4'" sing N N 467 U "O4'" "C1'" sing N N 468 U "C3'" "O3'" sing N N 469 U "C3'" "C2'" sing N N 470 U "C3'" "H3'" sing N N 471 U "O3'" "HO3'" sing N N 472 U "C2'" "O2'" sing N N 473 U "C2'" "C1'" sing N N 474 U "C2'" "H2'" sing N N 475 U "O2'" "HO2'" sing N N 476 U "C1'" N1 sing N N 477 U "C1'" "H1'" sing N N 478 U N1 C2 sing N N 479 U N1 C6 sing N N 480 U C2 O2 doub N N 481 U C2 N3 sing N N 482 U N3 C4 sing N N 483 U N3 H3 sing N N 484 U C4 O4 doub N N 485 U C4 C5 sing N N 486 U C5 C6 doub N N 487 U C5 H5 sing N N 488 U C6 H6 sing N N 489 VAL N CA sing N N 490 VAL N H sing N N 491 VAL N H2 sing N N 492 VAL CA C sing N N 493 VAL CA CB sing N N 494 VAL CA HA sing N N 495 VAL C O doub N N 496 VAL C OXT sing N N 497 VAL CB CG1 sing N N 498 VAL CB CG2 sing N N 499 VAL CB HB sing N N 500 VAL CG1 HG11 sing N N 501 VAL CG1 HG12 sing N N 502 VAL CG1 HG13 sing N N 503 VAL CG2 HG21 sing N N 504 VAL CG2 HG22 sing N N 505 VAL CG2 HG23 sing N N 506 VAL OXT HXT sing N N 507 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5OC6 'double helix' 5OC6 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B C 1 1_555 C G 9 1_555 -0.375 -0.002 0.301 -9.413 -10.979 0.298 1 B_C1:G9_C B 1 ? C 9 ? 19 1 1 B G 2 1_555 C C 8 1_555 0.777 -0.192 -0.410 -9.314 -12.653 -0.298 2 B_G2:C8_C B 2 ? C 8 ? 19 1 1 B A 3 1_555 C U 7 1_555 -0.076 -0.013 0.396 0.188 -11.564 3.836 3 B_A3:U7_C B 3 ? C 7 ? 20 1 1 B A 4 1_555 C U 6 1_555 0.341 -0.063 -0.414 -11.464 -24.403 -5.065 4 B_A4:U6_C B 4 ? C 6 ? 20 1 1 B U 6 1_555 C A 4 1_555 -1.351 0.064 -0.952 15.476 -12.497 -14.106 5 B_U6:A4_C B 6 ? C 4 ? 20 1 1 B U 7 1_555 C A 3 1_555 -0.919 -0.013 -0.245 6.539 -8.775 3.258 6 B_U7:A3_C B 7 ? C 3 ? 20 1 1 B C 8 1_555 C G 2 1_555 -0.737 0.379 -0.125 8.967 -19.616 12.576 7 B_C8:G2_C B 8 ? C 2 ? 19 1 1 B G 9 1_555 C C 1 1_555 0.422 -0.187 -0.602 -12.067 -15.432 1.350 8 B_G9:C1_C B 9 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B C 1 1_555 C G 9 1_555 B G 2 1_555 C C 8 1_555 -0.066 -0.782 3.277 4.058 8.004 36.697 -2.219 0.615 3.023 12.485 -6.329 37.742 1 BB_C1G2:C8G9_CC B 1 ? C 9 ? B 2 ? C 8 ? 1 B G 2 1_555 C C 8 1_555 B A 3 1_555 C U 7 1_555 0.314 -1.406 2.897 -4.556 2.171 27.968 -3.295 -1.543 2.699 4.446 9.331 28.410 2 BB_G2A3:U7C8_CC B 2 ? C 8 ? B 3 ? C 7 ? 1 B A 3 1_555 C U 7 1_555 B A 4 1_555 C U 6 1_555 -0.352 -1.596 3.491 5.827 9.225 35.533 -3.742 1.333 2.909 14.695 -9.281 37.118 3 BB_A3A4:U6U7_CC B 3 ? C 7 ? B 4 ? C 6 ? 1 B A 4 1_555 C U 6 1_555 B U 6 1_555 C A 4 1_555 -0.750 -3.731 5.590 -2.921 25.921 51.874 -5.946 0.544 3.546 27.731 3.125 57.655 4 BB_A4U6:A4U6_CC B 4 ? C 6 ? B 6 ? C 4 ? 1 B U 6 1_555 C A 4 1_555 B U 7 1_555 C A 3 1_555 0.818 -1.551 3.480 -7.266 10.826 33.940 -3.962 -2.301 2.654 17.754 11.916 36.290 5 BB_U6U7:A3A4_CC B 6 ? C 4 ? B 7 ? C 3 ? 1 B U 7 1_555 C A 3 1_555 B C 8 1_555 C G 2 1_555 0.753 -1.683 3.161 0.337 8.467 31.344 -4.355 -1.295 2.636 15.324 -0.610 32.441 6 BB_U7C8:G2A3_CC B 7 ? C 3 ? B 8 ? C 2 ? 1 B C 8 1_555 C G 2 1_555 B G 9 1_555 C C 1 1_555 -1.183 -0.897 3.758 -1.198 18.170 36.986 -3.452 1.543 3.048 26.746 1.763 41.085 7 BB_C8G9:C1G2_CC B 8 ? C 2 ? B 9 ? C 1 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4WFT _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5OC6 _atom_sites.fract_transf_matrix[1][1] 0.017112 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008654 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015011 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_