HEADER RNA BINDING PROTEIN 29-JUN-17 5OC6 TITLE CRYSTAL STRUCTURE OF HUMAN TRNA-DIHYDROURIDINE(20) SYNTHASE DSRBD IN TITLE 2 COMPLEX WITH A 22 NUCLEOTIDE DSRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 338-450; COMPND 5 SYNONYM: DIHYDROURIDINE SYNTHASE 2,UP-REGULATED IN LUNG CANCER COMPND 6 PROTEIN 8,URLC8,TRNA-DIHYDROURIDINE SYNTHASE 2-LIKE,HDUS2; COMPND 7 EC: 1.3.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA; COMPND 11 CHAIN: B, C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DUS2, DUS2L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET11D; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS DOUBLE-STRANDED RNA-BINDING DOMAIN PROTEIN-RNA COMPLEX DSRNA, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.BOU-NADER,L.PECQUEUR,D.HAMDANE REVDAT 4 17-JAN-24 5OC6 1 REMARK REVDAT 3 17-APR-19 5OC6 1 JRNL REVDAT 2 16-JAN-19 5OC6 1 JRNL REVDAT 1 26-DEC-18 5OC6 0 JRNL AUTH C.BOU-NADER,P.BARRAUD,L.PECQUEUR,J.PEREZ,C.VELOURS, JRNL AUTH 2 W.SHEPARD,M.FONTECAVE,C.TISNE,D.HAMDANE JRNL TITL MOLECULAR BASIS FOR TRANSFER RNA RECOGNITION BY THE JRNL TITL 2 DOUBLE-STRANDED RNA-BINDING DOMAIN OF HUMAN DIHYDROURIDINE JRNL TITL 3 SYNTHASE 2. JRNL REF NUCLEIC ACIDS RES. V. 47 3117 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 30605527 JRNL DOI 10.1093/NAR/GKY1302 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 3855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.860 REMARK 3 FREE R VALUE TEST SET COUNT : 380 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.58 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1040 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2438 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 940 REMARK 3 BIN R VALUE (WORKING SET) : 0.2417 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 100 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 718 REMARK 3 NUCLEIC ACID ATOMS : 468 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 100.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.53310 REMARK 3 B22 (A**2) : -8.56830 REMARK 3 B33 (A**2) : -2.96490 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.530 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.438 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1251 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1794 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 360 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 16 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 125 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1251 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 183 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1416 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.85 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.40 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.85 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -12.7472 -11.0038 5.8448 REMARK 3 T TENSOR REMARK 3 T11: -0.0181 T22: 0.0703 REMARK 3 T33: -0.2308 T12: 0.0449 REMARK 3 T13: -0.1095 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 6.6991 L22: 8.3154 REMARK 3 L33: 5.6330 L12: 2.6646 REMARK 3 L13: -1.2742 L23: -2.4712 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.4908 S13: -0.1577 REMARK 3 S21: 0.1106 S22: 0.5442 S23: -0.3081 REMARK 3 S31: 0.2577 S32: -0.5442 S33: -0.5442 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* },{ C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -13.9277 -27.7193 16.0777 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.1798 REMARK 3 T33: 0.0654 T12: -0.0442 REMARK 3 T13: -0.1520 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.1894 REMARK 3 L33: 0.8125 L12: 0.5523 REMARK 3 L13: -2.9104 L23: 0.3085 REMARK 3 S TENSOR REMARK 3 S11: -0.1997 S12: -0.1434 S13: -0.4671 REMARK 3 S21: 0.5442 S22: 0.2100 S23: -0.3904 REMARK 3 S31: 0.5442 S32: 0.2563 S33: -0.0103 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3855 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 43.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.30640 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% V/V ISOPROPANOL 20 MM MGCL2 50 MM REMARK 280 MES, PH 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.22000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.78000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.22000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.78000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.31000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.22000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.78000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.31000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.22000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.78000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 337 REMARK 465 THR A 338 REMARK 465 SER A 339 REMARK 465 GLU A 340 REMARK 465 GLN A 341 REMARK 465 THR A 342 REMARK 465 GLY A 343 REMARK 465 GLU A 344 REMARK 465 PRO A 345 REMARK 465 ALA A 346 REMARK 465 GLU A 347 REMARK 465 ASP A 348 REMARK 465 THR A 349 REMARK 465 SER A 350 REMARK 465 LEU A 441 REMARK 465 GLY A 442 REMARK 465 GLU A 443 REMARK 465 GLU A 444 REMARK 465 SER A 445 REMARK 465 PRO A 446 REMARK 465 SER A 447 REMARK 465 LEU A 448 REMARK 465 HIS A 449 REMARK 465 LYS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 361 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C B 1 P C B 1 OP3 -0.131 REMARK 500 C C 1 P C C 1 OP3 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C B 1 OP1 - P - OP2 ANGL. DEV. = -9.4 DEGREES REMARK 500 C C 1 OP1 - P - OP2 ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 384 -104.31 -41.73 REMARK 500 GLN A 385 138.85 -175.91 REMARK 500 LEU A 395 -80.17 -64.06 REMARK 500 REMARK 500 REMARK: NULL DBREF 5OC6 A 338 450 UNP Q9NX74 DUS2L_HUMAN 338 450 DBREF 5OC6 B 1 11 PDB 5OC6 5OC6 1 11 DBREF 5OC6 C 1 11 PDB 5OC6 5OC6 1 11 SEQADV 5OC6 MET A 337 UNP Q9NX74 INITIATING METHIONINE SEQADV 5OC6 HIS A 451 UNP Q9NX74 EXPRESSION TAG SEQADV 5OC6 HIS A 452 UNP Q9NX74 EXPRESSION TAG SEQADV 5OC6 HIS A 453 UNP Q9NX74 EXPRESSION TAG SEQADV 5OC6 HIS A 454 UNP Q9NX74 EXPRESSION TAG SEQADV 5OC6 HIS A 455 UNP Q9NX74 EXPRESSION TAG SEQADV 5OC6 HIS A 456 UNP Q9NX74 EXPRESSION TAG SEQRES 1 A 120 MET THR SER GLU GLN THR GLY GLU PRO ALA GLU ASP THR SEQRES 2 A 120 SER GLY VAL ILE LYS MET ALA VAL LYS PHE ASP ARG ARG SEQRES 3 A 120 ALA TYR PRO ALA GLN ILE THR PRO LYS MET CYS LEU LEU SEQRES 4 A 120 GLU TRP CYS ARG ARG GLU LYS LEU ALA GLN PRO VAL TYR SEQRES 5 A 120 GLU THR VAL GLN ARG PRO LEU ASP ARG LEU PHE SER SER SEQRES 6 A 120 ILE VAL THR VAL ALA GLU GLN LYS TYR GLN SER THR LEU SEQRES 7 A 120 TRP ASP LYS SER LYS LYS LEU ALA GLU GLN ALA ALA ALA SEQRES 8 A 120 ILE VAL CYS LEU ARG SER GLN GLY LEU PRO GLU GLY ARG SEQRES 9 A 120 LEU GLY GLU GLU SER PRO SER LEU HIS LYS HIS HIS HIS SEQRES 10 A 120 HIS HIS HIS SEQRES 1 B 11 C G A A C U U C G C G SEQRES 1 C 11 C G A A C U U C G C G HELIX 1 AA1 ASP A 360 TYR A 364 5 5 HELIX 2 AA2 THR A 369 GLU A 381 1 13 HELIX 3 AA3 SER A 418 GLN A 434 1 17 SHEET 1 AA1 4 VAL A 352 MET A 355 0 SHEET 2 AA1 4 GLN A 408 SER A 412 1 O LYS A 409 N ILE A 353 SHEET 3 AA1 4 PHE A 399 VAL A 405 -1 N VAL A 403 O TYR A 410 SHEET 4 AA1 4 VAL A 387 GLN A 392 -1 N VAL A 387 O THR A 404 CRYST1 58.440 115.560 66.620 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017112 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015011 0.00000