HEADER RNA BINDING PROTEIN 29-JUN-17 5OC6
TITLE CRYSTAL STRUCTURE OF HUMAN TRNA-DIHYDROURIDINE(20) SYNTHASE DSRBD IN
TITLE 2 COMPLEX WITH A 22 NUCLEOTIDE DSRNA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 338-450;
COMPND 5 SYNONYM: DIHYDROURIDINE SYNTHASE 2,UP-REGULATED IN LUNG CANCER
COMPND 6 PROTEIN 8,URLC8,TRNA-DIHYDROURIDINE SYNTHASE 2-LIKE,HDUS2;
COMPND 7 EC: 1.3.1.-;
COMPND 8 ENGINEERED: YES;
COMPND 9 MOL_ID: 2;
COMPND 10 MOLECULE: RNA;
COMPND 11 CHAIN: B, C;
COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: DUS2, DUS2L;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET11D;
SOURCE 9 MOL_ID: 2;
SOURCE 10 SYNTHETIC: YES;
SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 12 ORGANISM_TAXID: 32630
KEYWDS DOUBLE-STRANDED RNA-BINDING DOMAIN PROTEIN-RNA COMPLEX DSRNA, RNA
KEYWDS 2 BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR C.BOU-NADER,L.PECQUEUR,D.HAMDANE
REVDAT 4 17-JAN-24 5OC6 1 REMARK
REVDAT 3 17-APR-19 5OC6 1 JRNL
REVDAT 2 16-JAN-19 5OC6 1 JRNL
REVDAT 1 26-DEC-18 5OC6 0
JRNL AUTH C.BOU-NADER,P.BARRAUD,L.PECQUEUR,J.PEREZ,C.VELOURS,
JRNL AUTH 2 W.SHEPARD,M.FONTECAVE,C.TISNE,D.HAMDANE
JRNL TITL MOLECULAR BASIS FOR TRANSFER RNA RECOGNITION BY THE
JRNL TITL 2 DOUBLE-STRANDED RNA-BINDING DOMAIN OF HUMAN DIHYDROURIDINE
JRNL TITL 3 SYNTHASE 2.
JRNL REF NUCLEIC ACIDS RES. V. 47 3117 2019
JRNL REFN ESSN 1362-4962
JRNL PMID 30605527
JRNL DOI 10.1093/NAR/GKY1302
REMARK 2
REMARK 2 RESOLUTION. 3.20 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.65
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7
REMARK 3 NUMBER OF REFLECTIONS : 3855
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.228
REMARK 3 R VALUE (WORKING SET) : 0.226
REMARK 3 FREE R VALUE : 0.242
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.860
REMARK 3 FREE R VALUE TEST SET COUNT : 380
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 5
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.58
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1040
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2438
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 940
REMARK 3 BIN R VALUE (WORKING SET) : 0.2417
REMARK 3 BIN FREE R VALUE : 0.2660
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.62
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 100
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 718
REMARK 3 NUCLEIC ACID ATOMS : 468
REMARK 3 HETEROGEN ATOMS : 0
REMARK 3 SOLVENT ATOMS : 0
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 100.0
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.32
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 11.53310
REMARK 3 B22 (A**2) : -8.56830
REMARK 3 B33 (A**2) : -2.96490
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.530
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.438
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 1251 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 1794 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 360 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 16 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 125 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 1251 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 183 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 1416 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.008
REMARK 3 BOND ANGLES (DEGREES) : 0.85
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.40
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.85
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -12.7472 -11.0038 5.8448
REMARK 3 T TENSOR
REMARK 3 T11: -0.0181 T22: 0.0703
REMARK 3 T33: -0.2308 T12: 0.0449
REMARK 3 T13: -0.1095 T23: 0.0555
REMARK 3 L TENSOR
REMARK 3 L11: 6.6991 L22: 8.3154
REMARK 3 L33: 5.6330 L12: 2.6646
REMARK 3 L13: -1.2742 L23: -2.4712
REMARK 3 S TENSOR
REMARK 3 S11: 0.0000 S12: 0.4908 S13: -0.1577
REMARK 3 S21: 0.1106 S22: 0.5442 S23: -0.3081
REMARK 3 S31: 0.2577 S32: -0.5442 S33: -0.5442
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* },{ C|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -13.9277 -27.7193 16.0777
REMARK 3 T TENSOR
REMARK 3 T11: 0.0133 T22: 0.1798
REMARK 3 T33: 0.0654 T12: -0.0442
REMARK 3 T13: -0.1520 T23: 0.0709
REMARK 3 L TENSOR
REMARK 3 L11: 0.0000 L22: 0.1894
REMARK 3 L33: 0.8125 L12: 0.5523
REMARK 3 L13: -2.9104 L23: 0.3085
REMARK 3 S TENSOR
REMARK 3 S11: -0.1997 S12: -0.1434 S13: -0.4671
REMARK 3 S21: 0.5442 S22: 0.2100 S23: -0.3904
REMARK 3 S31: 0.5442 S32: 0.2563 S33: -0.0103
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5OC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-17.
REMARK 100 THE DEPOSITION ID IS D_1200005557.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 13-JUN-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SOLEIL
REMARK 200 BEAMLINE : PROXIMA 2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.98010
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3855
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200
REMARK 200 RESOLUTION RANGE LOW (A) : 43.650
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5
REMARK 200 DATA REDUNDANCY : 5.800
REMARK 200 R MERGE (I) : 0.30640
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.1100
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31
REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4
REMARK 200 DATA REDUNDANCY IN SHELL : 3.80
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.850
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4WFT
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.74
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 15% V/V ISOPROPANOL 20 MM MGCL2 50 MM
REMARK 280 MES, PH 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.31000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.31000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.22000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.78000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.22000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.78000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.31000
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.22000
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.78000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.31000
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.22000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.78000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 8850 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 337
REMARK 465 THR A 338
REMARK 465 SER A 339
REMARK 465 GLU A 340
REMARK 465 GLN A 341
REMARK 465 THR A 342
REMARK 465 GLY A 343
REMARK 465 GLU A 344
REMARK 465 PRO A 345
REMARK 465 ALA A 346
REMARK 465 GLU A 347
REMARK 465 ASP A 348
REMARK 465 THR A 349
REMARK 465 SER A 350
REMARK 465 LEU A 441
REMARK 465 GLY A 442
REMARK 465 GLU A 443
REMARK 465 GLU A 444
REMARK 465 SER A 445
REMARK 465 PRO A 446
REMARK 465 SER A 447
REMARK 465 LEU A 448
REMARK 465 HIS A 449
REMARK 465 LYS A 450
REMARK 465 HIS A 451
REMARK 465 HIS A 452
REMARK 465 HIS A 453
REMARK 465 HIS A 454
REMARK 465 HIS A 455
REMARK 465 HIS A 456
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 361 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 C B 1 P C B 1 OP3 -0.131
REMARK 500 C C 1 P C C 1 OP3 -0.127
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 C B 1 OP1 - P - OP2 ANGL. DEV. = -9.4 DEGREES
REMARK 500 C C 1 OP1 - P - OP2 ANGL. DEV. = -9.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 384 -104.31 -41.73
REMARK 500 GLN A 385 138.85 -175.91
REMARK 500 LEU A 395 -80.17 -64.06
REMARK 500
REMARK 500 REMARK: NULL
DBREF 5OC6 A 338 450 UNP Q9NX74 DUS2L_HUMAN 338 450
DBREF 5OC6 B 1 11 PDB 5OC6 5OC6 1 11
DBREF 5OC6 C 1 11 PDB 5OC6 5OC6 1 11
SEQADV 5OC6 MET A 337 UNP Q9NX74 INITIATING METHIONINE
SEQADV 5OC6 HIS A 451 UNP Q9NX74 EXPRESSION TAG
SEQADV 5OC6 HIS A 452 UNP Q9NX74 EXPRESSION TAG
SEQADV 5OC6 HIS A 453 UNP Q9NX74 EXPRESSION TAG
SEQADV 5OC6 HIS A 454 UNP Q9NX74 EXPRESSION TAG
SEQADV 5OC6 HIS A 455 UNP Q9NX74 EXPRESSION TAG
SEQADV 5OC6 HIS A 456 UNP Q9NX74 EXPRESSION TAG
SEQRES 1 A 120 MET THR SER GLU GLN THR GLY GLU PRO ALA GLU ASP THR
SEQRES 2 A 120 SER GLY VAL ILE LYS MET ALA VAL LYS PHE ASP ARG ARG
SEQRES 3 A 120 ALA TYR PRO ALA GLN ILE THR PRO LYS MET CYS LEU LEU
SEQRES 4 A 120 GLU TRP CYS ARG ARG GLU LYS LEU ALA GLN PRO VAL TYR
SEQRES 5 A 120 GLU THR VAL GLN ARG PRO LEU ASP ARG LEU PHE SER SER
SEQRES 6 A 120 ILE VAL THR VAL ALA GLU GLN LYS TYR GLN SER THR LEU
SEQRES 7 A 120 TRP ASP LYS SER LYS LYS LEU ALA GLU GLN ALA ALA ALA
SEQRES 8 A 120 ILE VAL CYS LEU ARG SER GLN GLY LEU PRO GLU GLY ARG
SEQRES 9 A 120 LEU GLY GLU GLU SER PRO SER LEU HIS LYS HIS HIS HIS
SEQRES 10 A 120 HIS HIS HIS
SEQRES 1 B 11 C G A A C U U C G C G
SEQRES 1 C 11 C G A A C U U C G C G
HELIX 1 AA1 ASP A 360 TYR A 364 5 5
HELIX 2 AA2 THR A 369 GLU A 381 1 13
HELIX 3 AA3 SER A 418 GLN A 434 1 17
SHEET 1 AA1 4 VAL A 352 MET A 355 0
SHEET 2 AA1 4 GLN A 408 SER A 412 1 O LYS A 409 N ILE A 353
SHEET 3 AA1 4 PHE A 399 VAL A 405 -1 N VAL A 403 O TYR A 410
SHEET 4 AA1 4 VAL A 387 GLN A 392 -1 N VAL A 387 O THR A 404
CRYST1 58.440 115.560 66.620 90.00 90.00 90.00 C 2 2 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017112 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008654 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015011 0.00000