HEADER IMMUNE SYSTEM 04-JUL-17 5OCY TITLE CRYSTAL STRUCTURE OF ACPA E4 IN COMPLEX WITH CII-C-48-CIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACPA E4 FAB FRAGMENT - HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE FAB FRAGMENT WAS PREPARED FROM A CHIMERIC MAB COMPND 6 CONTAINING THE VARIABLE DOMAINS OF THE HUMAN ACPA E4 AND THE CONSTANT COMPND 7 DOMAINS OF MOUSE IGG2B NOT MODELED PARTS ARE NOT VISIBLE IN THE COMPND 8 ELECTRON DENSITY MAP; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ACPA E4 FAB FRAGMENT - LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: THE FAB FRAGMENT WAS PREPARED FROM A CHIMERIC MAB COMPND 14 CONTAINING THE VARIABLE DOMAINS OF THE HUMAN ACPA E4 AND THE CONSTANT COMPND 15 DOMAINS OF MOUSE IGG2B THE N-TERMINAL GLUTAMINE IS COMPND 16 POSTTRANSLATIONALLY MODIFIED TO PYROGLUTAMIC ACID NOT MODELED PARTS COMPND 17 ARE INVISIBLE IN ELECTRON DENSITY; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: CII-C-48-CIT; COMPND 20 CHAIN: C; COMPND 21 ENGINEERED: YES; COMPND 22 OTHER_DETAILS: SYNTHETIC PEPTIDE CONTAINING A CITRULLINATED COLLAGEN COMPND 23 TYPE II EPITOPE BIOTIN AND AMINOHEXANOIC ACID ATTACHED AT N-TERMINUS COMPND 24 CIRCULARIZED VIA DISULFIDE BRIDGE FORMATION BETWEEN THE TWO CYSTEINES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: B CELLS; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F (TM); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: MAMMALIAN EXPRESSION VECTOR; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCEP4; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 CELL_LINE: B CELLS; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F (TM); SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: MAMMALIAN EXPRESSION VECTOR; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PCEP4; SOURCE 23 MOL_ID: 3; SOURCE 24 SYNTHETIC: YES; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_COMMON: HUMAN; SOURCE 27 ORGANISM_TAXID: 9606; SOURCE 28 OTHER_DETAILS: PART OF THE SEQUENCE OCCURS NATURALLY IN HUMAN SOURCE 29 COLLAGEN TYPE II KEYWDS ANTI-CITRULLINATED PROTEIN ANTIBODY FAB FRAGMENT, CITRULLINATED KEYWDS 2 COLLAGEN TYPE II EPITOPE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.DOBRITZSCH,C.GE,R.HOLMDAHL REVDAT 5 17-JAN-24 5OCY 1 REMARK REVDAT 4 15-NOV-23 5OCY 1 LINK ATOM REVDAT 3 11-MAR-20 5OCY 1 JRNL SEQRES REVDAT 2 07-AUG-19 5OCY 1 JRNL REVDAT 1 04-JUL-18 5OCY 0 JRNL AUTH C.GE,B.XU,B.LIANG,E.LONNBLOM,S.L.LUNDSTROM,R.A.ZUBAREV, JRNL AUTH 2 B.AYOGLU,P.NILSSON,T.SKOGH,A.KASTBOM,V.MALMSTROM, JRNL AUTH 3 L.KLARESKOG,R.E.M.TOES,T.RISPENS,D.DOBRITZSCH,R.HOLMDAHL JRNL TITL STRUCTURAL BASIS OF CROSS-REACTIVITY OF ANTI-CITRULLINATED JRNL TITL 2 PROTEIN ANTIBODIES. JRNL REF ARTHRITIS RHEUMATOL V. 71 210 2019 JRNL REFN ISSN 2326-5191 JRNL PMID 30152126 JRNL DOI 10.1002/ART.40698 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 759 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3273 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.22000 REMARK 3 B22 (A**2) : 3.64000 REMARK 3 B33 (A**2) : -1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.473 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.242 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.408 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3362 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3004 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4592 ; 1.409 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7009 ; 1.794 ; 2.999 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 6.893 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;35.169 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;13.342 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.545 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3697 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 663 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1731 ; 2.023 ; 3.704 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1730 ; 2.011 ; 3.703 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2155 ; 3.363 ; 5.535 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2156 ; 3.365 ; 5.536 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1631 ; 2.014 ; 3.867 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1632 ; 2.013 ; 3.868 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2438 ; 3.201 ; 5.722 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3457 ; 5.305 ;41.521 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3447 ; 5.292 ;41.535 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14679 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OCX (EARLY MODEL) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 6000, 0.1 M TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.06500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.16500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.52400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.16500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.06500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.52400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 134 REMARK 465 CYS H 135 REMARK 465 GLY H 136 REMARK 465 ASP H 137 REMARK 465 THR H 138 REMARK 465 GLY H 164 REMARK 465 SER H 165 REMARK 465 LEU H 166 REMARK 465 SER H 167 REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 465 CYS C 0 REMARK 465 GLU C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 465 HIS C 13 REMARK 465 ARG C 14 REMARK 465 GLY C 15 REMARK 465 CYS C 16 REMARK 465 ALA C 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CIR C 8 C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -16.92 82.66 REMARK 500 ASP H 108 123.12 -170.22 REMARK 500 SER H 197 -73.43 -43.83 REMARK 500 ASP L 26 -113.89 43.71 REMARK 500 ASP L 52 -51.47 71.36 REMARK 500 ASN L 174 1.86 81.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 5OCY H 1 220 PDB 5OCY 5OCY 1 220 DBREF 5OCY L 1 216 PDB 5OCY 5OCY 1 216 DBREF 5OCY C 0 17 PDB 5OCY 5OCY 0 17 SEQRES 1 H 220 GLN VAL GLN LEU GLU GLU SER GLY PRO GLY LEU VAL ARG SEQRES 2 H 220 PRO SER GLU THR LEU SER LEU SER CYS THR VAL SER GLY SEQRES 3 H 220 PHE PRO MET SER GLU SER TYR PHE TRP GLY TRP ILE ARG SEQRES 4 H 220 GLN SER PRO GLY LYS GLY LEU GLU TRP LEU GLY SER VAL SEQRES 5 H 220 ILE HIS THR GLY THR THR TYR TYR ARG PRO SER LEU GLU SEQRES 6 H 220 SER ARG LEU THR ILE ALA MET ASP PRO SER LYS ASN GLN SEQRES 7 H 220 VAL SER LEU SER LEU THR SER VAL THR VAL ALA ASP SER SEQRES 8 H 220 ALA MET TYR TYR CYS VAL ARG ILE ARG GLY GLY SER SER SEQRES 9 H 220 ASN TRP LEU ASP PRO TRP GLY PRO GLY ILE VAL VAL THR SEQRES 10 H 220 ALA SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO SEQRES 11 H 220 LEU ALA PRO GLY CYS GLY ASP THR THR GLY SER SER VAL SEQRES 12 H 220 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SER SEQRES 13 H 220 VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER SER SEQRES 14 H 220 VAL HIS THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR SEQRES 15 H 220 THR MET SER SER SER VAL THR VAL PRO SER SER THR TRP SEQRES 16 H 220 PRO SER GLN THR VAL THR CYS SER VAL ALA HIS PRO ALA SEQRES 17 H 220 SER SER THR THR VAL ASP LYS LYS ILE GLU PRO ARG SEQRES 1 L 216 PCA SER VAL TRP THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 L 216 PRO GLY GLN LYS VAL THR ILE SER CYS SER GLY ASP ASP SEQRES 3 L 216 SER ILE LEU ARG SER ALA PHE VAL SER TRP TYR GLN GLN SEQRES 4 L 216 VAL PRO GLY SER ALA PRO LYS LEU VAL ILE PHE ASP ASP SEQRES 5 L 216 ARG GLN ARG PRO SER GLY ILE PRO ALA ARG PHE SER GLY SEQRES 6 L 216 SER ASN SER GLY THR THR ALA THR LEU ASP ILE ALA GLY SEQRES 7 L 216 LEU GLN ARG GLY ASP GLU ALA ASP TYR TYR CYS ALA ALA SEQRES 8 L 216 TRP ASN GLY ARG LEU SER ALA PHE VAL PHE GLY SER GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU SEQRES 11 L 216 THR ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE SEQRES 12 L 216 TYR PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY SEQRES 13 L 216 THR PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU SEQRES 15 L 216 THR LEU THR ALA ARG ALA TRP GLU ARG HIS SER SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SEQRES 17 L 216 SER LEU SER ARG ALA ASP CYS SER SEQRES 1 C 18 CYS GLU ALA GLY GLU PRO GLY GLU CIR GLY LEU LYS GLY SEQRES 2 C 18 HIS ARG GLY CYS ALA HET PCA L 1 8 HET CIR C 8 11 HETNAM PCA PYROGLUTAMIC ACID HETNAM CIR CITRULLINE FORMUL 2 PCA C5 H7 N O3 FORMUL 3 CIR C6 H13 N3 O3 FORMUL 4 HOH *103(H2 O) HELIX 1 AA1 LEU H 64 SER H 66 5 3 HELIX 2 AA2 THR H 87 SER H 91 5 5 HELIX 3 AA3 SER L 27 ALA L 32 5 6 HELIX 4 AA4 GLN L 80 GLU L 84 5 5 HELIX 5 AA5 SER L 125 GLU L 130 1 6 HELIX 6 AA6 THR L 185 HIS L 192 1 8 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O THR H 23 N GLU H 5 SHEET 3 AA1 4 GLN H 78 LEU H 83 -1 O LEU H 81 N LEU H 20 SHEET 4 AA1 4 LEU H 68 ASP H 73 -1 N ASP H 73 O GLN H 78 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 ILE H 114 ALA H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA2 6 ALA H 92 ARG H 100 -1 N TYR H 94 O ILE H 114 SHEET 4 AA2 6 PHE H 34 GLN H 40 -1 N PHE H 34 O ILE H 99 SHEET 5 AA2 6 LEU H 46 VAL H 52 -1 O VAL H 52 N TRP H 35 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O TYR H 59 N SER H 51 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 ILE H 114 ALA H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA3 4 ALA H 92 ARG H 100 -1 N TYR H 94 O ILE H 114 SHEET 4 AA3 4 TRP H 106 TRP H 110 -1 O ASP H 108 N ARG H 98 SHEET 1 AA4 4 SER H 127 LEU H 131 0 SHEET 2 AA4 4 SER H 142 TYR H 152 -1 O LEU H 148 N TYR H 129 SHEET 3 AA4 4 LEU H 181 PRO H 191 -1 O VAL H 190 N VAL H 143 SHEET 4 AA4 4 SER H 169 THR H 172 -1 N HIS H 171 O SER H 187 SHEET 1 AA5 4 SER H 127 LEU H 131 0 SHEET 2 AA5 4 SER H 142 TYR H 152 -1 O LEU H 148 N TYR H 129 SHEET 3 AA5 4 LEU H 181 PRO H 191 -1 O VAL H 190 N VAL H 143 SHEET 4 AA5 4 LEU H 176 GLN H 178 -1 N GLN H 178 O LEU H 181 SHEET 1 AA6 3 THR H 158 ASN H 162 0 SHEET 2 AA6 3 THR H 201 HIS H 206 -1 O ALA H 205 N THR H 158 SHEET 3 AA6 3 THR H 211 LYS H 216 -1 O VAL H 213 N VAL H 204 SHEET 1 AA7 5 SER L 9 ALA L 12 0 SHEET 2 AA7 5 THR L 105 VAL L 109 1 O THR L 108 N VAL L 10 SHEET 3 AA7 5 ALA L 85 ASN L 93 -1 N ALA L 85 O LEU L 107 SHEET 4 AA7 5 SER L 35 GLN L 39 -1 N GLN L 39 O ASP L 86 SHEET 5 AA7 5 LYS L 46 ILE L 49 -1 O LYS L 46 N GLN L 38 SHEET 1 AA8 4 SER L 9 ALA L 12 0 SHEET 2 AA8 4 THR L 105 VAL L 109 1 O THR L 108 N VAL L 10 SHEET 3 AA8 4 ALA L 85 ASN L 93 -1 N ALA L 85 O LEU L 107 SHEET 4 AA8 4 ALA L 98 PHE L 101 -1 O ALA L 98 N ASN L 93 SHEET 1 AA9 3 VAL L 18 SER L 23 0 SHEET 2 AA9 3 THR L 71 ILE L 76 -1 O LEU L 74 N ILE L 20 SHEET 3 AA9 3 PHE L 63 ASN L 67 -1 N SER L 64 O ASP L 75 SHEET 1 AB1 4 SER L 118 PHE L 122 0 SHEET 2 AB1 4 ALA L 134 PHE L 143 -1 O THR L 141 N SER L 118 SHEET 3 AB1 4 TYR L 176 LEU L 184 -1 O ALA L 178 N ILE L 140 SHEET 4 AB1 4 MET L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AB2 4 SER L 118 PHE L 122 0 SHEET 2 AB2 4 ALA L 134 PHE L 143 -1 O THR L 141 N SER L 118 SHEET 3 AB2 4 TYR L 176 LEU L 184 -1 O ALA L 178 N ILE L 140 SHEET 4 AB2 4 SER L 169 LYS L 170 -1 N SER L 169 O MET L 177 SHEET 1 AB3 4 THR L 157 PRO L 158 0 SHEET 2 AB3 4 THR L 149 VAL L 154 -1 N VAL L 154 O THR L 157 SHEET 3 AB3 4 SER L 194 HIS L 201 -1 O GLN L 198 N ASP L 151 SHEET 4 AB3 4 HIS L 204 SER L 211 -1 O VAL L 206 N VAL L 199 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 147 CYS H 202 1555 1555 2.05 SSBOND 3 CYS L 22 CYS L 89 1555 1555 2.06 SSBOND 4 CYS L 138 CYS L 197 1555 1555 2.02 LINK C PCA L 1 N SER L 2 1555 1555 1.33 LINK C GLU C 7 N CIR C 8 1555 1555 1.34 LINK C CIR C 8 N GLY C 9 1555 1555 1.33 CISPEP 1 ASP H 108 PRO H 109 0 1.86 CISPEP 2 PHE H 153 PRO H 154 0 -9.10 CISPEP 3 GLU H 155 SER H 156 0 0.88 CISPEP 4 TRP H 195 PRO H 196 0 11.70 CISPEP 5 TYR L 144 PRO L 145 0 -2.09 CRYST1 46.130 99.048 100.330 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021678 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009967 0.00000