HEADER IMMUNE SYSTEM 04-JUL-17 5OD0 TITLE CRYSTAL STRUCTURE OF ACPA E4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB FRAGMENT OF ACPA E4 - LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE FAB FRAGMENT WAS PREPARED FROM A CHIMERIC ANTIBODY COMPND 6 CONTAINING THE VARIABLE DOMAIN OF HUMAN ACPA E4 AND CONSTANT DOMAINS COMPND 7 OF MOUSE IGG2B THE N-TERMINAL GLN IS POSTTRANSLATIONALLY MODIFIED TO COMPND 8 PYROGLUTAMIC ACID 2 C-TERMINAL RESIDUES NOT VISIBLE IN ELECTRON COMPND 9 DENSITY AND THEREFORE NOT MODELLED; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: FAB FRAGMENT OF ACPA E4 - HEAVY CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: THE FAB FRAGMENT WAS PREPARED FROM A CHIMERIC ANTIBODY COMPND 15 CONTAINING THE VARIABLE DOMAIN OF HUMAN ACPA E4 AND CONSTANT DOMAINS COMPND 16 OF MOUSE IGG2B THE N-TERMINAL GLN IS POSTTRANSLATIONALLY MODIFIED TO COMPND 17 PYROGLUTAMIC ACID RESIDUES NOT MODELED ARE NOT VISIBLE IN THE COMPND 18 ELECTRON DENSITY MAP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: B CELLS; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F (TM); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: MAMMALIAN EXPRESSION VECTOR; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCEP4; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 CELL_LINE: B CELLS; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F (TM); SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: MAMMALIAN EXPRESSION VECTOR; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PCEP4 KEYWDS ANTI-CITRULLINATED PROTEIN ANTIBODY FAB FRAGMENT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.DOBRITZSCH,C.GE,R.HOLMDAHL REVDAT 5 16-OCT-24 5OD0 1 REMARK REVDAT 4 17-JAN-24 5OD0 1 REMARK REVDAT 3 11-MAR-20 5OD0 1 JRNL SEQRES REVDAT 2 07-AUG-19 5OD0 1 JRNL REVDAT 1 04-JUL-18 5OD0 0 JRNL AUTH C.GE,B.XU,B.LIANG,E.LONNBLOM,S.L.LUNDSTROM,R.A.ZUBAREV, JRNL AUTH 2 B.AYOGLU,P.NILSSON,T.SKOGH,A.KASTBOM,V.MALMSTROM, JRNL AUTH 3 L.KLARESKOG,R.E.M.TOES,T.RISPENS,D.DOBRITZSCH,R.HOLMDAHL JRNL TITL STRUCTURAL BASIS OF CROSS-REACTIVITY OF ANTI-CITRULLINATED JRNL TITL 2 PROTEIN ANTIBODIES. JRNL REF ARTHRITIS RHEUMATOL V. 71 210 2019 JRNL REFN ISSN 2326-5191 JRNL PMID 30152126 JRNL DOI 10.1002/ART.40698 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1977 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2735 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3234 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3453 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3081 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4743 ; 1.459 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7220 ; 0.936 ; 2.997 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 6.592 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;31.749 ;22.893 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 526 ;11.127 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.723 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3836 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 685 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1768 ; 0.632 ; 1.212 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1767 ; 0.632 ; 1.211 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2215 ; 1.136 ; 1.809 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2216 ; 1.136 ; 1.810 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1685 ; 0.646 ; 1.253 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1685 ; 0.646 ; 1.253 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2512 ; 1.052 ; 1.845 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3791 ; 4.994 ;15.655 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3671 ; 4.686 ;14.503 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 63 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1150 -3.2670 -18.8120 REMARK 3 T TENSOR REMARK 3 T11: 0.0547 T22: 0.0843 REMARK 3 T33: 0.0538 T12: -0.0153 REMARK 3 T13: 0.0284 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.5545 L22: 1.4198 REMARK 3 L33: 1.5177 L12: 0.0652 REMARK 3 L13: -0.0768 L23: -1.3800 REMARK 3 S TENSOR REMARK 3 S11: 0.1279 S12: 0.1861 S13: 0.0582 REMARK 3 S21: 0.1255 S22: -0.1984 S23: 0.0073 REMARK 3 S31: -0.0525 S32: 0.1719 S33: 0.0705 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 64 H 143 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5890 4.1150 -18.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.0805 REMARK 3 T33: 0.0707 T12: -0.0161 REMARK 3 T13: 0.0307 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 0.8142 L22: 0.6515 REMARK 3 L33: 0.3826 L12: -0.7081 REMARK 3 L13: 0.1915 L23: -0.1274 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.1648 S13: 0.1097 REMARK 3 S21: 0.0785 S22: -0.1278 S23: -0.0605 REMARK 3 S31: -0.0155 S32: 0.1249 S33: 0.1494 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 144 H 220 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5330 25.3230 -10.5550 REMARK 3 T TENSOR REMARK 3 T11: 0.1872 T22: 0.0099 REMARK 3 T33: 0.0571 T12: 0.0113 REMARK 3 T13: -0.0599 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.6468 L22: 0.8650 REMARK 3 L33: 2.6392 L12: -0.3502 REMARK 3 L13: -0.2262 L23: -0.3977 REMARK 3 S TENSOR REMARK 3 S11: -0.3392 S12: 0.0703 S13: 0.0907 REMARK 3 S21: 0.1993 S22: 0.0411 S23: -0.1309 REMARK 3 S31: -0.4183 S32: -0.1076 S33: 0.2981 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 110 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1140 -13.3850 -9.5610 REMARK 3 T TENSOR REMARK 3 T11: 0.0642 T22: 0.0546 REMARK 3 T33: 0.0398 T12: -0.0145 REMARK 3 T13: -0.0089 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.9525 L22: 0.1699 REMARK 3 L33: 1.2053 L12: -0.2751 REMARK 3 L13: -0.4561 L23: -0.1613 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: -0.0198 S13: -0.0209 REMARK 3 S21: -0.0203 S22: 0.0287 S23: 0.0208 REMARK 3 S31: 0.0116 S32: -0.0219 S33: -0.0570 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 111 L 206 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7110 12.8700 -16.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.0556 REMARK 3 T33: 0.0167 T12: 0.0130 REMARK 3 T13: -0.0002 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.7445 L22: 1.4905 REMARK 3 L33: 3.2882 L12: -0.5017 REMARK 3 L13: 1.1339 L23: -1.8551 REMARK 3 S TENSOR REMARK 3 S11: -0.0814 S12: 0.0280 S13: -0.0011 REMARK 3 S21: 0.0101 S22: 0.0485 S23: -0.0319 REMARK 3 S31: -0.0633 S32: -0.0428 S33: 0.0330 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 207 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4700 19.1690 -20.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1628 REMARK 3 T33: 0.1623 T12: 0.0570 REMARK 3 T13: -0.0808 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 3.2891 L22: 12.5143 REMARK 3 L33: 18.5020 L12: -2.8889 REMARK 3 L13: 0.9981 L23: -14.3231 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: -0.1301 S13: 0.0589 REMARK 3 S21: 0.2086 S22: 0.2955 S23: 0.2749 REMARK 3 S31: -0.3951 S32: -0.3758 S33: -0.3387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40031 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 34.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.21800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OCX (EARLY MODEL) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 6000, 0.1 M MES PH 6.0, REMARK 280 0.2 M AMMONIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.45500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.01000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.01000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.45500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 465 GLY H 136 REMARK 465 ASP H 137 REMARK 465 THR H 138 REMARK 465 THR H 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER L 68 O ASP H 214 1545 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 55 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 26 -122.15 40.75 REMARK 500 ASP L 52 -42.63 71.10 REMARK 500 SER H 15 -25.35 84.19 REMARK 500 ASP H 108 130.59 -174.33 REMARK 500 THR H 194 -71.08 -93.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 633 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH H 603 DISTANCE = 6.11 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 302 DBREF 5OD0 L 1 216 PDB 5OD0 5OD0 1 216 DBREF 5OD0 H 1 220 PDB 5OD0 5OD0 1 220 SEQRES 1 L 216 PCA SER VAL TRP THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 L 216 PRO GLY GLN LYS VAL THR ILE SER CYS SER GLY ASP ASP SEQRES 3 L 216 SER ILE LEU ARG SER ALA PHE VAL SER TRP TYR GLN GLN SEQRES 4 L 216 VAL PRO GLY SER ALA PRO LYS LEU VAL ILE PHE ASP ASP SEQRES 5 L 216 ARG GLN ARG PRO SER GLY ILE PRO ALA ARG PHE SER GLY SEQRES 6 L 216 SER ASN SER GLY THR THR ALA THR LEU ASP ILE ALA GLY SEQRES 7 L 216 LEU GLN ARG GLY ASP GLU ALA ASP TYR TYR CYS ALA ALA SEQRES 8 L 216 TRP ASN GLY ARG LEU SER ALA PHE VAL PHE GLY SER GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU SEQRES 11 L 216 THR ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE SEQRES 12 L 216 TYR PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY SEQRES 13 L 216 THR PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU SEQRES 15 L 216 THR LEU THR ALA ARG ALA TRP GLU ARG HIS SER SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SEQRES 17 L 216 SER LEU SER ARG ALA ASP CYS SER SEQRES 1 H 220 PCA VAL GLN LEU GLU GLU SER GLY PRO GLY LEU VAL ARG SEQRES 2 H 220 PRO SER GLU THR LEU SER LEU SER CYS THR VAL SER GLY SEQRES 3 H 220 PHE PRO MET SER GLU SER TYR PHE TRP GLY TRP ILE ARG SEQRES 4 H 220 GLN SER PRO GLY LYS GLY LEU GLU TRP LEU GLY SER VAL SEQRES 5 H 220 ILE HIS THR GLY THR THR TYR TYR ARG PRO SER LEU GLU SEQRES 6 H 220 SER ARG LEU THR ILE ALA MET ASP PRO SER LYS ASN GLN SEQRES 7 H 220 VAL SER LEU SER LEU THR SER VAL THR VAL ALA ASP SER SEQRES 8 H 220 ALA MET TYR TYR CYS VAL ARG ILE ARG GLY GLY SER SER SEQRES 9 H 220 ASN TRP LEU ASP PRO TRP GLY PRO GLY ILE VAL VAL THR SEQRES 10 H 220 ALA SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO SEQRES 11 H 220 LEU ALA PRO GLY CYS GLY ASP THR THR GLY SER SER VAL SEQRES 12 H 220 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SER SEQRES 13 H 220 VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER SER SEQRES 14 H 220 VAL HIS THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR SEQRES 15 H 220 THR MET SER SER SER VAL THR VAL PRO SER SER THR TRP SEQRES 16 H 220 PRO SER GLN THR VAL THR CYS SER VAL ALA HIS PRO ALA SEQRES 17 H 220 SER SER THR THR VAL ASP LYS LYS ILE GLU PRO ARG HET PCA L 1 8 HET PCA H 1 8 HET GOL L 301 6 HET GOL L 302 6 HET GOL H 301 6 HET GOL H 302 6 HETNAM PCA PYROGLUTAMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 HOH *436(H2 O) HELIX 1 AA1 SER L 27 ALA L 32 5 6 HELIX 2 AA2 GLN L 80 GLU L 84 5 5 HELIX 3 AA3 SER L 125 GLU L 130 1 6 HELIX 4 AA4 ALA L 186 ARG L 191 1 6 HELIX 5 AA5 PRO H 62 SER H 66 5 5 HELIX 6 AA6 PRO H 74 LYS H 76 5 3 HELIX 7 AA7 THR H 87 SER H 91 5 5 HELIX 8 AA8 PRO H 207 SER H 210 5 4 SHEET 1 AA1 5 SER L 9 ALA L 12 0 SHEET 2 AA1 5 THR L 105 VAL L 109 1 O LYS L 106 N VAL L 10 SHEET 3 AA1 5 ALA L 85 ASN L 93 -1 N ALA L 85 O LEU L 107 SHEET 4 AA1 5 SER L 35 GLN L 39 -1 N GLN L 39 O ASP L 86 SHEET 5 AA1 5 LYS L 46 ILE L 49 -1 O LYS L 46 N GLN L 38 SHEET 1 AA2 4 SER L 9 ALA L 12 0 SHEET 2 AA2 4 THR L 105 VAL L 109 1 O LYS L 106 N VAL L 10 SHEET 3 AA2 4 ALA L 85 ASN L 93 -1 N ALA L 85 O LEU L 107 SHEET 4 AA2 4 ALA L 98 PHE L 101 -1 O ALA L 98 N ASN L 93 SHEET 1 AA3 3 VAL L 18 SER L 23 0 SHEET 2 AA3 3 THR L 71 ILE L 76 -1 O ALA L 72 N CYS L 22 SHEET 3 AA3 3 PHE L 63 ASN L 67 -1 N SER L 64 O ASP L 75 SHEET 1 AA4 4 SER L 118 PHE L 122 0 SHEET 2 AA4 4 LYS L 133 PHE L 143 -1 O VAL L 137 N PHE L 122 SHEET 3 AA4 4 TYR L 176 THR L 185 -1 O LEU L 184 N ALA L 134 SHEET 4 AA4 4 MET L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AA5 4 SER L 118 PHE L 122 0 SHEET 2 AA5 4 LYS L 133 PHE L 143 -1 O VAL L 137 N PHE L 122 SHEET 3 AA5 4 TYR L 176 THR L 185 -1 O LEU L 184 N ALA L 134 SHEET 4 AA5 4 SER L 169 LYS L 170 -1 N SER L 169 O MET L 177 SHEET 1 AA6 4 THR L 157 PRO L 158 0 SHEET 2 AA6 4 THR L 149 VAL L 154 -1 N VAL L 154 O THR L 157 SHEET 3 AA6 4 SER L 194 HIS L 201 -1 O GLN L 198 N ASP L 151 SHEET 4 AA6 4 HIS L 204 SER L 211 -1 O VAL L 206 N VAL L 199 SHEET 1 AA7 4 GLN H 3 SER H 7 0 SHEET 2 AA7 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA7 4 GLN H 78 LEU H 83 -1 O LEU H 83 N LEU H 18 SHEET 4 AA7 4 LEU H 68 ASP H 73 -1 N ALA H 71 O SER H 80 SHEET 1 AA8 6 LEU H 11 VAL H 12 0 SHEET 2 AA8 6 ILE H 114 ALA H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA8 6 ALA H 92 ARG H 100 -1 N ALA H 92 O VAL H 116 SHEET 4 AA8 6 TYR H 33 GLN H 40 -1 N ILE H 38 O TYR H 95 SHEET 5 AA8 6 LEU H 46 VAL H 52 -1 O LEU H 49 N TRP H 37 SHEET 6 AA8 6 THR H 58 TYR H 60 -1 O TYR H 59 N SER H 51 SHEET 1 AA9 4 LEU H 11 VAL H 12 0 SHEET 2 AA9 4 ILE H 114 ALA H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA9 4 ALA H 92 ARG H 100 -1 N ALA H 92 O VAL H 116 SHEET 4 AA9 4 LEU H 107 TRP H 110 -1 O ASP H 108 N ARG H 98 SHEET 1 AB1 4 SER H 127 LEU H 131 0 SHEET 2 AB1 4 SER H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 AB1 4 LEU H 181 PRO H 191 -1 O MET H 184 N VAL H 149 SHEET 4 AB1 4 SER H 169 THR H 172 -1 N HIS H 171 O SER H 187 SHEET 1 AB2 4 SER H 127 LEU H 131 0 SHEET 2 AB2 4 SER H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 AB2 4 LEU H 181 PRO H 191 -1 O MET H 184 N VAL H 149 SHEET 4 AB2 4 LEU H 176 GLN H 178 -1 N GLN H 178 O LEU H 181 SHEET 1 AB3 3 THR H 158 ASN H 162 0 SHEET 2 AB3 3 THR H 201 HIS H 206 -1 O SER H 203 N THR H 160 SHEET 3 AB3 3 THR H 211 LYS H 216 -1 O THR H 211 N HIS H 206 SSBOND 1 CYS L 22 CYS L 89 1555 1555 2.08 SSBOND 2 CYS L 138 CYS L 197 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.08 SSBOND 4 CYS H 147 CYS H 202 1555 1555 2.03 LINK C PCA L 1 N SER L 2 1555 1555 1.33 LINK C PCA H 1 N VAL H 2 1555 1555 1.33 CISPEP 1 TYR L 144 PRO L 145 0 -0.56 CISPEP 2 ASP H 108 PRO H 109 0 -6.81 CISPEP 3 PHE H 153 PRO H 154 0 -8.28 CISPEP 4 GLU H 155 SER H 156 0 6.58 CISPEP 5 TRP H 195 PRO H 196 0 13.70 SITE 1 AC1 6 SER H 197 GLN L 38 LYS L 46 PHE L 63 SITE 2 AC1 6 GLY L 82 ASP L 83 SITE 1 AC2 6 SER H 209 SER H 210 THR H 211 ARG L 30 SITE 2 AC2 6 PHE L 33 HOH L 427 SITE 1 AC3 9 PHE H 34 TRP H 48 SER H 51 ILE H 99 SITE 2 AC3 9 ASN H 105 GOL H 302 HOH H 415 HOH H 419 SITE 3 AC3 9 HOH H 477 SITE 1 AC4 6 TYR H 59 GLY H 102 SER H 103 ASN H 105 SITE 2 AC4 6 GOL H 301 HOH H 447 CRYST1 54.910 62.050 124.020 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018212 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008063 0.00000 HETATM 1 N PCA L 1 10.960 -15.376 -26.282 1.00 13.49 N ANISOU 1 N PCA L 1 1767 2114 1243 13 -216 -224 N HETATM 2 CA PCA L 1 10.820 -13.927 -26.343 1.00 13.31 C ANISOU 2 CA PCA L 1 1718 2122 1214 59 -181 -157 C HETATM 3 CB PCA L 1 9.572 -13.653 -25.472 1.00 13.22 C ANISOU 3 CB PCA L 1 1685 2119 1216 31 -184 -135 C HETATM 4 CG PCA L 1 9.522 -14.868 -24.551 1.00 13.17 C ANISOU 4 CG PCA L 1 1704 2050 1248 -32 -211 -182 C HETATM 5 CD PCA L 1 10.266 -15.941 -25.301 1.00 13.50 C ANISOU 5 CD PCA L 1 1772 2080 1275 -39 -232 -239 C HETATM 6 OE PCA L 1 10.276 -17.150 -25.043 1.00 13.86 O ANISOU 6 OE PCA L 1 1844 2083 1337 -83 -254 -289 O HETATM 7 C PCA L 1 12.072 -13.253 -25.754 1.00 12.65 C ANISOU 7 C PCA L 1 1663 1970 1171 76 -144 -125 C HETATM 8 O PCA L 1 12.843 -13.898 -25.031 1.00 12.33 O ANISOU 8 O PCA L 1 1654 1866 1165 49 -150 -150 O