HEADER DE NOVO PROTEIN HYDROLASE 05-JUL-17 5OD9 TITLE STRUCTURE OF THE ENGINEERED METALLOESTERASE MID1SC9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MID1SC9; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIRECTED EVOLUTION, ENGINEERED METALLOENZYME, DE NOVO PROTEIN KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.STUDER,P.R.E.MITTL,D.HILVERT REVDAT 4 08-MAY-24 5OD9 1 LINK REVDAT 3 22-APR-20 5OD9 1 REMARK REVDAT 2 29-MAY-19 5OD9 1 JRNL REMARK REVDAT 1 12-DEC-18 5OD9 0 JRNL AUTH S.STUDER,D.A.HANSEN,Z.L.PIANOWSKI,P.R.E.MITTL,A.DEBON, JRNL AUTH 2 S.L.GUFFY,B.S.DER,B.KUHLMAN,D.HILVERT JRNL TITL EVOLUTION OF A HIGHLY ACTIVE AND ENANTIOSPECIFIC JRNL TITL 2 METALLOENZYME FROM SHORT PEPTIDES. JRNL REF SCIENCE V. 362 1285 2018 JRNL REFN ESSN 1095-9203 JRNL PMID 30545884 JRNL DOI 10.1126/SCIENCE.AAU3744 REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1481 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OD9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.92 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000030 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58851 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.130 REMARK 200 RESOLUTION RANGE LOW (A) : 52.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS-PROPANE PH 7.92, 30% REMARK 280 (W/V) POLYETHYLENE GLYCOL 4000, 431 MM MGCL2., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.91000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.47950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.91000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.47950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -196.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A3127 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3132 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3202 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 999 REMARK 465 SER A 1000 REMARK 465 GLY B 1999 REMARK 465 SER B 2000 REMARK 465 GLY B 2001 REMARK 465 GLY B 2047 REMARK 465 SER B 2048 REMARK 465 GLY B 2049 REMARK 465 GLY B 2050 REMARK 465 SER B 2094 REMARK 465 ASP B 2095 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1028 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A1068 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A1072 CD - NE - CZ ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG A1072 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A1072 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A1074 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP A1074 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A1077 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A1078 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 MET A1087 CA - CB - CG ANGL. DEV. = -10.4 DEGREES REMARK 500 PHE A1091 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A1095 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 PHE B2014 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B2023 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B2028 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 GLN B2056 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG B2068 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B2077 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B2077 NE - CZ - NH2 ANGL. DEV. = -8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2297 DISTANCE = 6.62 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A3006 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A1010 OD1 REMARK 620 2 HOH A3116 O 77.6 REMARK 620 3 HOH A3143 O 80.4 87.1 REMARK 620 4 HOH A3148 O 91.8 93.4 171.9 REMARK 620 5 HOH A3192 O 101.5 178.9 92.1 87.2 REMARK 620 6 HOH A3217 O 173.1 100.9 92.8 95.0 79.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A3002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1035 ND1 REMARK 620 2 HIS A1061 NE2 102.0 REMARK 620 3 HIS A1065 NE2 103.2 106.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A3012 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1035 NE2 REMARK 620 2 GLU B2032 OE1 111.7 REMARK 620 3 HIS B2035 ND1 100.5 119.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A3001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1039 NE2 REMARK 620 2 GLU A1058 OE1 102.9 REMARK 620 3 GLU A1058 OE2 109.4 59.0 REMARK 620 4 HIS A1061 ND1 102.2 101.7 145.7 REMARK 620 5 HIS B2065 NE2 99.9 147.2 91.3 96.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A3005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A1056 OE1 REMARK 620 2 GLU A1089 OE1 83.0 REMARK 620 3 GLN A1092 OE1 78.7 6.3 REMARK 620 4 HOH A3107 O 88.2 6.4 9.5 REMARK 620 5 HOH A3147 O 76.6 8.3 10.1 14.7 REMARK 620 6 HOH A3172 O 82.2 2.5 7.9 8.6 6.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A3011 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1065 ND1 REMARK 620 2 HIS B2035 NE2 105.1 REMARK 620 3 HIS B2039 NE2 111.5 99.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 3004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 3005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 3006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 3009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9RW A 3010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 3011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 3012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 2101 DBREF 5OD9 A 999 1095 PDB 5OD9 5OD9 999 1095 DBREF 5OD9 B 1999 2095 PDB 5OD9 5OD9 1999 2095 SEQRES 1 A 97 GLY SER GLY SER PRO LEU ALA GLN GLN ILE LYS ASN THR SEQRES 2 A 97 LEU THR PHE ILE GLY GLN ALA ASN ALA ALA GLY ARG MET SEQRES 3 A 97 ASP GLU VAL ARG THR LEU GLN GLU ASN LEU HIS PRO LEU SEQRES 4 A 97 TRP HIS GLU TYR PHE GLN GLN THR GLU GLY SER GLY GLY SEQRES 5 A 97 SER PRO LEU ALA GLN GLN ILE GLU TYR GLY HIS VAL LEU SEQRES 6 A 97 ILE HIS GLN ALA ARG ALA ALA GLY ARG MET ASP GLU VAL SEQRES 7 A 97 ARG ARG LEU SER GLU ASN THR LEU GLN LEU MET LYS GLU SEQRES 8 A 97 TYR PHE GLN GLN SER ASP SEQRES 1 B 97 GLY SER GLY SER PRO LEU ALA GLN GLN ILE LYS ASN THR SEQRES 2 B 97 LEU THR PHE ILE GLY GLN ALA ASN ALA ALA GLY ARG MET SEQRES 3 B 97 ASP GLU VAL ARG THR LEU GLN GLU ASN LEU HIS PRO LEU SEQRES 4 B 97 TRP HIS GLU TYR PHE GLN GLN THR GLU GLY SER GLY GLY SEQRES 5 B 97 SER PRO LEU ALA GLN GLN ILE GLU TYR GLY HIS VAL LEU SEQRES 6 B 97 ILE HIS GLN ALA ARG ALA ALA GLY ARG MET ASP GLU VAL SEQRES 7 B 97 ARG ARG LEU SER GLU ASN THR LEU GLN LEU MET LYS GLU SEQRES 8 B 97 TYR PHE GLN GLN SER ASP HET ZN A3001 1 HET ZN A3002 1 HET CL A3003 1 HET CL A3004 1 HET MG A3005 1 HET MG A3006 1 HET EDO A3007 4 HET EDO A3008 4 HET IMD A3009 5 HET 9RW A3010 11 HET ZN A3011 1 HET ZN A3012 1 HET CL B2101 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM IMD IMIDAZOLE HETNAM 9RW (2~{S})-2-PHENYLPROPANOIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CL 3(CL 1-) FORMUL 7 MG 2(MG 2+) FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 IMD C3 H5 N2 1+ FORMUL 12 9RW C9 H10 O2 FORMUL 16 HOH *223(H2 O) HELIX 1 AA1 SER A 1002 GLY A 1022 1 21 HELIX 2 AA2 ARG A 1023 GLU A 1046 1 24 HELIX 3 AA3 SER A 1051 GLY A 1071 1 21 HELIX 4 AA4 ARG A 1072 PHE A 1091 1 20 HELIX 5 AA5 PRO B 2003 GLY B 2022 1 20 HELIX 6 AA6 ARG B 2023 GLU B 2046 1 24 HELIX 7 AA7 PRO B 2052 GLY B 2071 1 20 HELIX 8 AA8 ARG B 2072 GLN B 2093 1 22 LINK OD1 ASN A1010 MG MG A3006 1555 1555 1.95 LINK ND1 HIS A1035 ZN ZN A3002 1555 1555 2.01 LINK NE2 HIS A1035 ZN ZN A3012 1555 1555 1.99 LINK NE2 HIS A1039 ZN ZN A3001 1555 1555 2.00 LINK OE1 GLN A1056 MG MG A3005 1555 2575 1.95 LINK OE1 GLU A1058 ZN ZN A3001 1555 1555 2.25 LINK OE2 GLU A1058 ZN ZN A3001 1555 1555 2.11 LINK ND1 HIS A1061 ZN ZN A3001 1555 1555 1.99 LINK NE2 HIS A1061 ZN ZN A3002 1555 1555 2.02 LINK NE2 HIS A1065 ZN ZN A3002 1555 1555 2.02 LINK ND1 HIS A1065 ZN ZN A3011 1555 1555 2.02 LINK OE1 GLU A1089 MG MG A3005 1555 1555 1.99 LINK OE1 GLN A1092 MG MG A3005 1555 1555 1.99 LINK ZN ZN A3001 NE2 HIS B2065 1555 1555 2.07 LINK MG MG A3005 O HOH A3107 1555 1555 2.13 LINK MG MG A3005 O HOH A3147 1555 1555 2.11 LINK MG MG A3005 O HOH A3172 1555 1555 2.06 LINK MG MG A3006 O HOH A3116 1555 1555 2.12 LINK MG MG A3006 O HOH A3143 1555 1555 2.33 LINK MG MG A3006 O HOH A3148 1555 1555 1.98 LINK MG MG A3006 O HOH A3192 1555 1555 2.20 LINK MG MG A3006 O HOH A3217 1555 1555 2.12 LINK ZN ZN A3011 NE2 HIS B2035 1555 1555 2.01 LINK ZN ZN A3011 NE2 HIS B2039 1555 1555 2.01 LINK ZN ZN A3012 OE1 GLU B2032 1555 1555 1.95 LINK ZN ZN A3012 ND1 HIS B2035 1555 1555 2.01 SITE 1 AC1 4 HIS A1039 GLU A1058 HIS A1061 HIS B2065 SITE 1 AC2 4 HIS A1035 HIS A1061 HIS A1065 CL A3003 SITE 1 AC3 7 GLN A1031 GLU A1032 HIS A1035 HIS A1061 SITE 2 AC3 7 HIS A1065 ARG A1068 ZN A3002 SITE 1 AC4 6 HIS A1065 ZN A3011 HIS B2035 HIS B2039 SITE 2 AC4 6 VAL B2062 HIS B2065 SITE 1 AC5 6 GLN A1056 GLU A1089 GLN A1092 HOH A3107 SITE 2 AC5 6 HOH A3147 HOH A3172 SITE 1 AC6 6 ASN A1010 HOH A3116 HOH A3143 HOH A3148 SITE 2 AC6 6 HOH A3192 HOH A3217 SITE 1 AC7 6 GLN A1031 ILE A1064 SER A1080 THR A1083 SITE 2 AC7 6 MET A1087 HOH A3178 SITE 1 AC8 4 GLU A1040 HOH A3101 HOH A3102 HOH A3105 SITE 1 AC9 4 PRO A1036 HOH A3125 HOH A3152 HOH B2243 SITE 1 AD1 5 GLY A1060 ARG A1078 LEU A1079 ASN A1082 SITE 2 AD1 5 HOH A3168 SITE 1 AD2 4 HIS A1065 CL A3004 HIS B2035 HIS B2039 SITE 1 AD3 4 HIS A1035 GLU B2032 HIS B2035 CL B2101 SITE 1 AD4 7 HIS A1035 HIS A1039 ZN A3012 GLU B2032 SITE 2 AD4 7 HIS B2035 HIS B2065 ARG B2068 CRYST1 43.820 104.959 33.604 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022821 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029758 0.00000