data_5ODG # _entry.id 5ODG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5ODG WWPDB D_1200005612 # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'contains the same protein complexed with GGCGC site' _pdbx_database_related.db_id 5OD6 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5ODG _pdbx_database_status.recvd_initial_deposition_date 2017-07-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kaczmarska, Z.' 1 0000-0002-7668-1442 'Marquez, J.A.' 2 ? 'Macias, M.J.' 3 0000-0002-6915-963X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 2070 _citation.page_last 2070 _citation.title 'Structural basis for genome wide recognition of 5-bp GC motifs by SMAD transcription factors.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-017-02054-6 _citation.pdbx_database_id_PubMed 29234012 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Martin-Malpartida, P.' 1 primary 'Batet, M.' 2 primary 'Kaczmarska, Z.' 3 primary 'Freier, R.' 4 primary 'Gomes, T.' 5 primary 'Aragon, E.' 6 primary 'Zou, Y.' 7 primary 'Wang, Q.' 8 primary 'Xi, Q.' 9 primary 'Ruiz, L.' 10 primary 'Vea, A.' 11 primary 'Marquez, J.A.' 12 primary 'Massague, J.' 13 primary 'Macias, M.J.' 14 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5ODG _cell.details ? _cell.formula_units_Z ? _cell.length_a 104.990 _cell.length_a_esd ? _cell.length_b 104.990 _cell.length_b_esd ? _cell.length_c 72.490 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ODG _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Mothers against decapentaplegic homolog 3' 15036.612 2 ? ? 'MH1 domain, UNP residues 11-135' ? 2 polymer syn ;DNA (5'-D(P*CP*AP*GP*GP*CP*TP*AP*GP*CP*CP*TP*GP*CP*A)-3') ; 4899.179 2 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 non-polymer nat 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hMAD-3,JV15-2,SMAD family member 3,hSMAD3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GAMIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPHVI YCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVETPVL ; ;GAMIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPHVI YCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVETPVL ; A,B ? 2 polydeoxyribonucleotide no no '(DT)(DG)(DC)(DA)(DG)(DG)(DC)(DT)(DA)(DG)(DC)(DC)(DT)(DG)(DC)(DA)' TGCAGGCTAGCCTGCA D,E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ILE n 1 5 VAL n 1 6 LYS n 1 7 ARG n 1 8 LEU n 1 9 LEU n 1 10 GLY n 1 11 TRP n 1 12 LYS n 1 13 LYS n 1 14 GLY n 1 15 GLU n 1 16 GLN n 1 17 ASN n 1 18 GLY n 1 19 GLN n 1 20 GLU n 1 21 GLU n 1 22 LYS n 1 23 TRP n 1 24 CYS n 1 25 GLU n 1 26 LYS n 1 27 ALA n 1 28 VAL n 1 29 LYS n 1 30 SER n 1 31 LEU n 1 32 VAL n 1 33 LYS n 1 34 LYS n 1 35 LEU n 1 36 LYS n 1 37 LYS n 1 38 THR n 1 39 GLY n 1 40 GLN n 1 41 LEU n 1 42 ASP n 1 43 GLU n 1 44 LEU n 1 45 GLU n 1 46 LYS n 1 47 ALA n 1 48 ILE n 1 49 THR n 1 50 THR n 1 51 GLN n 1 52 ASN n 1 53 VAL n 1 54 ASN n 1 55 THR n 1 56 LYS n 1 57 CYS n 1 58 ILE n 1 59 THR n 1 60 ILE n 1 61 PRO n 1 62 ARG n 1 63 SER n 1 64 LEU n 1 65 ASP n 1 66 GLY n 1 67 ARG n 1 68 LEU n 1 69 GLN n 1 70 VAL n 1 71 SER n 1 72 HIS n 1 73 ARG n 1 74 LYS n 1 75 GLY n 1 76 LEU n 1 77 PRO n 1 78 HIS n 1 79 VAL n 1 80 ILE n 1 81 TYR n 1 82 CYS n 1 83 ARG n 1 84 LEU n 1 85 TRP n 1 86 ARG n 1 87 TRP n 1 88 PRO n 1 89 ASP n 1 90 LEU n 1 91 HIS n 1 92 SER n 1 93 HIS n 1 94 HIS n 1 95 GLU n 1 96 LEU n 1 97 ARG n 1 98 ALA n 1 99 MET n 1 100 GLU n 1 101 LEU n 1 102 CYS n 1 103 GLU n 1 104 PHE n 1 105 ALA n 1 106 PHE n 1 107 ASN n 1 108 MET n 1 109 LYS n 1 110 LYS n 1 111 ASP n 1 112 GLU n 1 113 VAL n 1 114 CYS n 1 115 VAL n 1 116 ASN n 1 117 PRO n 1 118 TYR n 1 119 HIS n 1 120 TYR n 1 121 GLN n 1 122 ARG n 1 123 VAL n 1 124 GLU n 1 125 THR n 1 126 PRO n 1 127 VAL n 1 128 LEU n 2 1 DT n 2 2 DG n 2 3 DC n 2 4 DA n 2 5 DG n 2 6 DG n 2 7 DC n 2 8 DT n 2 9 DA n 2 10 DG n 2 11 DC n 2 12 DC n 2 13 DT n 2 14 DG n 2 15 DC n 2 16 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 128 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SMAD3, MADH3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SMAD3_HUMAN P84022 ? 1 ;IVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPHVIYCR LWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVETPVL ; 11 2 PDB 5ODG 5ODG ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5ODG A 4 ? 128 ? P84022 11 ? 135 ? 11 135 2 1 5ODG B 4 ? 128 ? P84022 11 ? 135 ? 11 135 3 2 5ODG D 1 ? 16 ? 5ODG 1 ? 16 ? 1 16 4 2 5ODG E 1 ? 16 ? 5ODG 1 ? 16 ? 1 16 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5ODG GLY A 1 ? UNP P84022 ? ? 'expression tag' 8 1 1 5ODG ALA A 2 ? UNP P84022 ? ? 'expression tag' 9 2 1 5ODG MET A 3 ? UNP P84022 ? ? 'expression tag' 10 3 2 5ODG GLY B 1 ? UNP P84022 ? ? 'expression tag' 8 4 2 5ODG ALA B 2 ? UNP P84022 ? ? 'expression tag' 9 5 2 5ODG MET B 3 ? UNP P84022 ? ? 'expression tag' 10 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5ODG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.02 M sodium potassium phosphate, 0.1 M BisTris propane pH 6.5, 20% PEG 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-12-04 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9700 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9700 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 52.23 _reflns.entry_id 5ODG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.12 _reflns.d_resolution_low 30.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22058 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.77 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.84 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.049 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.12 _reflns_shell.d_res_low 2.13 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.70 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 292 _reflns_shell.percent_possible_all 98.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.64 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.6635 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -5.63490 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][2] -5.63490 _refine.aniso_B[2][3] 0.00000 _refine.aniso_B[3][3] 11.26970 _refine.B_iso_max ? _refine.B_iso_mean 66.48 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5ODG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.12 _refine.ls_d_res_low 29.83 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22057 _refine.ls_number_reflns_R_free 1075 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.5 _refine.ls_percent_reflns_R_free 4.870 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_R_free 0.242 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.199 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.177 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.176 _refine.pdbx_overall_SU_R_Blow_DPI 0.201 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.202 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5ODG _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 2026 _refine_hist.pdbx_number_atoms_nucleic_acid 533 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 2643 _refine_hist.d_res_high 2.12 _refine_hist.d_res_low 29.83 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 2668 ? t_bond_d 2.00 HARMONIC 'X-RAY DIFFRACTION' ? 1.06 ? 3712 ? t_angle_deg 2.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 875 ? t_dihedral_angle_d 2.00 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_incorr_chiral_ct ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 49 ? t_trig_c_planes 2.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 319 ? t_gen_planes 5.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 2668 ? t_it 20.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 0 ? t_nbd 5.00 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 3.17 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 19.37 ? ? ? t_other_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 339 ? t_chiral_improper_torsion 5.00 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 2750 ? t_ideal_dist_contact 4.00 SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.12 _refine_ls_shell.d_res_low 2.22 _refine_ls_shell.number_reflns_all 2904 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 128 _refine_ls_shell.number_reflns_R_work 2776 _refine_ls_shell.percent_reflns_obs 99.42 _refine_ls_shell.percent_reflns_R_free 4.41 _refine_ls_shell.R_factor_all 0.2303 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2630 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2288 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 11 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5ODG _struct.title 'Crystal structure of Smad3-MH1 bound to the GGCT site.' _struct.pdbx_descriptor 'Mothers against decapentaplegic homolog 4/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5ODG _struct_keywords.text 'Smads, transcription factor, DNA complex, transcription' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 MET A 3 ? GLY A 10 ? MET A 10 GLY A 17 1 ? 8 HELX_P HELX_P2 AA2 ASN A 17 ? THR A 38 ? ASN A 24 THR A 45 1 ? 22 HELX_P HELX_P3 AA3 GLN A 40 ? GLN A 51 ? GLN A 47 GLN A 58 1 ? 12 HELX_P HELX_P4 AA4 LEU A 76 ? ARG A 86 ? LEU A 83 ARG A 93 1 ? 11 HELX_P HELX_P5 AA5 SER A 92 ? HIS A 94 ? SER A 99 HIS A 101 5 ? 3 HELX_P HELX_P6 AA6 ALA A 105 ? LYS A 109 ? ALA A 112 LYS A 116 5 ? 5 HELX_P HELX_P7 AA7 ASN A 116 ? TYR A 118 ? ASN A 123 TYR A 125 5 ? 3 HELX_P HELX_P8 AA8 ILE B 4 ? GLY B 10 ? ILE B 11 GLY B 17 1 ? 7 HELX_P HELX_P9 AA9 ASN B 17 ? GLY B 39 ? ASN B 24 GLY B 46 1 ? 23 HELX_P HELX_P10 AB1 GLN B 40 ? GLN B 51 ? GLN B 47 GLN B 58 1 ? 12 HELX_P HELX_P11 AB2 LEU B 76 ? ARG B 86 ? LEU B 83 ARG B 93 1 ? 11 HELX_P HELX_P12 AB3 SER B 92 ? HIS B 94 ? SER B 99 HIS B 101 5 ? 3 HELX_P HELX_P13 AB4 ALA B 105 ? LYS B 109 ? ALA B 112 LYS B 116 5 ? 5 HELX_P HELX_P14 AB5 ASN B 116 ? TYR B 118 ? ASN B 123 TYR B 125 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A CYS 57 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 64 A ZN 201 1_555 ? ? ? ? ? ? ? 2.444 ? metalc2 metalc ? ? A CYS 102 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 109 A ZN 201 1_555 ? ? ? ? ? ? ? 2.234 ? metalc3 metalc ? ? A CYS 114 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 121 A ZN 201 1_555 ? ? ? ? ? ? ? 2.370 ? metalc4 metalc ? ? A HIS 119 ND1 ? ? ? 1_555 E ZN . ZN ? ? A HIS 126 A ZN 201 1_555 ? ? ? ? ? ? ? 2.051 ? metalc5 metalc ? ? B CYS 57 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 64 B ZN 201 1_555 ? ? ? ? ? ? ? 2.449 ? metalc6 metalc ? ? B CYS 102 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 109 B ZN 201 1_555 ? ? ? ? ? ? ? 2.296 ? metalc7 metalc ? ? B CYS 114 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 121 B ZN 201 1_555 ? ? ? ? ? ? ? 2.347 ? metalc8 metalc ? ? B HIS 119 ND1 ? ? ? 1_555 G ZN . ZN ? ? B HIS 126 B ZN 201 1_555 ? ? ? ? ? ? ? 1.988 ? hydrog1 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 13 N3 ? ? D DA 4 E DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 13 O4 ? ? D DA 4 E DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 12 N3 ? ? D DG 5 E DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 12 O2 ? ? D DG 5 E DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 12 N4 ? ? D DG 5 E DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 11 N3 ? ? D DG 6 E DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 11 O2 ? ? D DG 6 E DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 11 N4 ? ? D DG 6 E DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 10 N1 ? ? D DC 7 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 10 O6 ? ? D DC 7 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 10 N2 ? ? D DC 7 E DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 9 N1 ? ? D DT 8 E DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 9 N6 ? ? D DT 8 E DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 8 N3 ? ? D DA 9 E DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 8 O4 ? ? D DA 9 E DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 7 N3 ? ? D DG 10 E DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 7 O2 ? ? D DG 10 E DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 7 N4 ? ? D DG 10 E DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 6 N1 ? ? D DC 11 E DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 6 O6 ? ? D DC 11 E DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 6 N2 ? ? D DC 11 E DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C DC 12 N3 ? ? ? 1_555 D DG 5 N1 ? ? D DC 12 E DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 5 O6 ? ? D DC 12 E DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 5 N2 ? ? D DC 12 E DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C DT 13 N3 ? ? ? 1_555 D DA 4 N1 ? ? D DT 13 E DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C DT 13 O4 ? ? ? 1_555 D DA 4 N6 ? ? D DT 13 E DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? C DG 14 N1 ? ? ? 1_555 D DC 3 N3 ? ? D DG 14 E DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C DG 14 N2 ? ? ? 1_555 D DC 3 O2 ? ? D DG 14 E DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C DG 14 O6 ? ? ? 1_555 D DC 3 N4 ? ? D DG 14 E DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C DC 15 N3 ? ? ? 1_555 D DG 2 N1 ? ? D DC 15 E DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C DC 15 N4 ? ? ? 1_555 D DG 2 O6 ? ? D DC 15 E DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C DC 15 O2 ? ? ? 1_555 D DG 2 N2 ? ? D DC 15 E DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C DA 16 N1 ? ? ? 1_555 D DT 1 N3 ? ? D DA 16 E DT 1 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 59 ? PRO A 61 ? THR A 66 PRO A 68 AA1 2 GLU A 112 ? CYS A 114 ? GLU A 119 CYS A 121 AA2 1 LEU A 68 ? VAL A 70 ? LEU A 75 VAL A 77 AA2 2 ARG A 73 ? GLY A 75 ? ARG A 80 GLY A 82 AA3 1 LEU A 96 ? ALA A 98 ? LEU A 103 ALA A 105 AA3 2 TYR A 120 ? ARG A 122 ? TYR A 127 ARG A 129 AA4 1 THR B 59 ? PRO B 61 ? THR B 66 PRO B 68 AA4 2 GLU B 112 ? CYS B 114 ? GLU B 119 CYS B 121 AA5 1 LEU B 68 ? VAL B 70 ? LEU B 75 VAL B 77 AA5 2 ARG B 73 ? GLY B 75 ? ARG B 80 GLY B 82 AA6 1 LEU B 96 ? ALA B 98 ? LEU B 103 ALA B 105 AA6 2 TYR B 120 ? ARG B 122 ? TYR B 127 ARG B 129 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 60 ? N ILE A 67 O VAL A 113 ? O VAL A 120 AA2 1 2 N LEU A 68 ? N LEU A 75 O GLY A 75 ? O GLY A 82 AA3 1 2 N ARG A 97 ? N ARG A 104 O GLN A 121 ? O GLN A 128 AA4 1 2 N ILE B 60 ? N ILE B 67 O VAL B 113 ? O VAL B 120 AA5 1 2 N LEU B 68 ? N LEU B 75 O GLY B 75 ? O GLY B 82 AA6 1 2 N ARG B 97 ? N ARG B 104 O GLN B 121 ? O GLN B 128 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 201 ? 4 'binding site for residue ZN A 201' AC2 Software A CL 202 ? 3 'binding site for residue CL A 202' AC3 Software B ZN 201 ? 4 'binding site for residue ZN B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 57 ? CYS A 64 . ? 1_555 ? 2 AC1 4 CYS A 102 ? CYS A 109 . ? 1_555 ? 3 AC1 4 CYS A 114 ? CYS A 121 . ? 1_555 ? 4 AC1 4 HIS A 119 ? HIS A 126 . ? 1_555 ? 5 AC2 3 CYS A 57 ? CYS A 64 . ? 1_555 ? 6 AC2 3 HOH H . ? HOH A 322 . ? 1_555 ? 7 AC2 3 HOH H . ? HOH A 336 . ? 1_555 ? 8 AC3 4 CYS B 57 ? CYS B 64 . ? 1_555 ? 9 AC3 4 CYS B 102 ? CYS B 109 . ? 1_555 ? 10 AC3 4 CYS B 114 ? CYS B 121 . ? 1_555 ? 11 AC3 4 HIS B 119 ? HIS B 126 . ? 1_555 ? # _atom_sites.entry_id 5ODG _atom_sites.fract_transf_matrix[1][1] 0.009525 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009525 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013795 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 8 ? ? ? A . n A 1 2 ALA 2 9 ? ? ? A . n A 1 3 MET 3 10 10 MET MET A . n A 1 4 ILE 4 11 11 ILE ILE A . n A 1 5 VAL 5 12 12 VAL VAL A . n A 1 6 LYS 6 13 13 LYS LYS A . n A 1 7 ARG 7 14 14 ARG ARG A . n A 1 8 LEU 8 15 15 LEU LEU A . n A 1 9 LEU 9 16 16 LEU LEU A . n A 1 10 GLY 10 17 17 GLY GLY A . n A 1 11 TRP 11 18 18 TRP TRP A . n A 1 12 LYS 12 19 19 LYS LYS A . n A 1 13 LYS 13 20 20 LYS LYS A . n A 1 14 GLY 14 21 21 GLY GLY A . n A 1 15 GLU 15 22 22 GLU GLU A . n A 1 16 GLN 16 23 23 GLN GLN A . n A 1 17 ASN 17 24 24 ASN ASN A . n A 1 18 GLY 18 25 25 GLY GLY A . n A 1 19 GLN 19 26 26 GLN GLN A . n A 1 20 GLU 20 27 27 GLU GLU A . n A 1 21 GLU 21 28 28 GLU GLU A . n A 1 22 LYS 22 29 29 LYS LYS A . n A 1 23 TRP 23 30 30 TRP TRP A . n A 1 24 CYS 24 31 31 CYS CYS A . n A 1 25 GLU 25 32 32 GLU GLU A . n A 1 26 LYS 26 33 33 LYS LYS A . n A 1 27 ALA 27 34 34 ALA ALA A . n A 1 28 VAL 28 35 35 VAL VAL A . n A 1 29 LYS 29 36 36 LYS LYS A . n A 1 30 SER 30 37 37 SER SER A . n A 1 31 LEU 31 38 38 LEU LEU A . n A 1 32 VAL 32 39 39 VAL VAL A . n A 1 33 LYS 33 40 40 LYS LYS A . n A 1 34 LYS 34 41 41 LYS LYS A . n A 1 35 LEU 35 42 42 LEU LEU A . n A 1 36 LYS 36 43 43 LYS LYS A . n A 1 37 LYS 37 44 44 LYS LYS A . n A 1 38 THR 38 45 45 THR THR A . n A 1 39 GLY 39 46 46 GLY GLY A . n A 1 40 GLN 40 47 47 GLN GLN A . n A 1 41 LEU 41 48 48 LEU LEU A . n A 1 42 ASP 42 49 49 ASP ASP A . n A 1 43 GLU 43 50 50 GLU GLU A . n A 1 44 LEU 44 51 51 LEU LEU A . n A 1 45 GLU 45 52 52 GLU GLU A . n A 1 46 LYS 46 53 53 LYS LYS A . n A 1 47 ALA 47 54 54 ALA ALA A . n A 1 48 ILE 48 55 55 ILE ILE A . n A 1 49 THR 49 56 56 THR THR A . n A 1 50 THR 50 57 57 THR THR A . n A 1 51 GLN 51 58 58 GLN GLN A . n A 1 52 ASN 52 59 59 ASN ASN A . n A 1 53 VAL 53 60 60 VAL VAL A . n A 1 54 ASN 54 61 61 ASN ASN A . n A 1 55 THR 55 62 62 THR THR A . n A 1 56 LYS 56 63 63 LYS LYS A . n A 1 57 CYS 57 64 64 CYS CYS A . n A 1 58 ILE 58 65 65 ILE ILE A . n A 1 59 THR 59 66 66 THR THR A . n A 1 60 ILE 60 67 67 ILE ILE A . n A 1 61 PRO 61 68 68 PRO PRO A . n A 1 62 ARG 62 69 69 ARG ARG A . n A 1 63 SER 63 70 70 SER SER A . n A 1 64 LEU 64 71 71 LEU LEU A . n A 1 65 ASP 65 72 72 ASP ASP A . n A 1 66 GLY 66 73 73 GLY GLY A . n A 1 67 ARG 67 74 74 ARG ARG A . n A 1 68 LEU 68 75 75 LEU LEU A . n A 1 69 GLN 69 76 76 GLN GLN A . n A 1 70 VAL 70 77 77 VAL VAL A . n A 1 71 SER 71 78 78 SER SER A . n A 1 72 HIS 72 79 79 HIS HIS A . n A 1 73 ARG 73 80 80 ARG ARG A . n A 1 74 LYS 74 81 81 LYS LYS A . n A 1 75 GLY 75 82 82 GLY GLY A . n A 1 76 LEU 76 83 83 LEU LEU A . n A 1 77 PRO 77 84 84 PRO PRO A . n A 1 78 HIS 78 85 85 HIS HIS A . n A 1 79 VAL 79 86 86 VAL VAL A . n A 1 80 ILE 80 87 87 ILE ILE A . n A 1 81 TYR 81 88 88 TYR TYR A . n A 1 82 CYS 82 89 89 CYS CYS A . n A 1 83 ARG 83 90 90 ARG ARG A . n A 1 84 LEU 84 91 91 LEU LEU A . n A 1 85 TRP 85 92 92 TRP TRP A . n A 1 86 ARG 86 93 93 ARG ARG A . n A 1 87 TRP 87 94 94 TRP TRP A . n A 1 88 PRO 88 95 95 PRO PRO A . n A 1 89 ASP 89 96 96 ASP ASP A . n A 1 90 LEU 90 97 97 LEU LEU A . n A 1 91 HIS 91 98 98 HIS HIS A . n A 1 92 SER 92 99 99 SER SER A . n A 1 93 HIS 93 100 100 HIS HIS A . n A 1 94 HIS 94 101 101 HIS HIS A . n A 1 95 GLU 95 102 102 GLU GLU A . n A 1 96 LEU 96 103 103 LEU LEU A . n A 1 97 ARG 97 104 104 ARG ARG A . n A 1 98 ALA 98 105 105 ALA ALA A . n A 1 99 MET 99 106 106 MET MET A . n A 1 100 GLU 100 107 107 GLU GLU A . n A 1 101 LEU 101 108 108 LEU LEU A . n A 1 102 CYS 102 109 109 CYS CYS A . n A 1 103 GLU 103 110 110 GLU GLU A . n A 1 104 PHE 104 111 111 PHE PHE A . n A 1 105 ALA 105 112 112 ALA ALA A . n A 1 106 PHE 106 113 113 PHE PHE A . n A 1 107 ASN 107 114 114 ASN ASN A . n A 1 108 MET 108 115 115 MET MET A . n A 1 109 LYS 109 116 116 LYS LYS A . n A 1 110 LYS 110 117 117 LYS LYS A . n A 1 111 ASP 111 118 118 ASP ASP A . n A 1 112 GLU 112 119 119 GLU GLU A . n A 1 113 VAL 113 120 120 VAL VAL A . n A 1 114 CYS 114 121 121 CYS CYS A . n A 1 115 VAL 115 122 122 VAL VAL A . n A 1 116 ASN 116 123 123 ASN ASN A . n A 1 117 PRO 117 124 124 PRO PRO A . n A 1 118 TYR 118 125 125 TYR TYR A . n A 1 119 HIS 119 126 126 HIS HIS A . n A 1 120 TYR 120 127 127 TYR TYR A . n A 1 121 GLN 121 128 128 GLN GLN A . n A 1 122 ARG 122 129 129 ARG ARG A . n A 1 123 VAL 123 130 130 VAL VAL A . n A 1 124 GLU 124 131 131 GLU GLU A . n A 1 125 THR 125 132 132 THR THR A . n A 1 126 PRO 126 133 133 PRO PRO A . n A 1 127 VAL 127 134 134 VAL VAL A . n A 1 128 LEU 128 135 135 LEU LEU A . n B 1 1 GLY 1 8 ? ? ? B . n B 1 2 ALA 2 9 ? ? ? B . n B 1 3 MET 3 10 10 MET MET B . n B 1 4 ILE 4 11 11 ILE ILE B . n B 1 5 VAL 5 12 12 VAL VAL B . n B 1 6 LYS 6 13 13 LYS LYS B . n B 1 7 ARG 7 14 14 ARG ARG B . n B 1 8 LEU 8 15 15 LEU LEU B . n B 1 9 LEU 9 16 16 LEU LEU B . n B 1 10 GLY 10 17 17 GLY GLY B . n B 1 11 TRP 11 18 18 TRP TRP B . n B 1 12 LYS 12 19 19 LYS LYS B . n B 1 13 LYS 13 20 20 LYS LYS B . n B 1 14 GLY 14 21 21 GLY GLY B . n B 1 15 GLU 15 22 22 GLU GLU B . n B 1 16 GLN 16 23 23 GLN GLN B . n B 1 17 ASN 17 24 24 ASN ASN B . n B 1 18 GLY 18 25 25 GLY GLY B . n B 1 19 GLN 19 26 26 GLN GLN B . n B 1 20 GLU 20 27 27 GLU GLU B . n B 1 21 GLU 21 28 28 GLU GLU B . n B 1 22 LYS 22 29 29 LYS LYS B . n B 1 23 TRP 23 30 30 TRP TRP B . n B 1 24 CYS 24 31 31 CYS CYS B . n B 1 25 GLU 25 32 32 GLU GLU B . n B 1 26 LYS 26 33 33 LYS LYS B . n B 1 27 ALA 27 34 34 ALA ALA B . n B 1 28 VAL 28 35 35 VAL VAL B . n B 1 29 LYS 29 36 36 LYS LYS B . n B 1 30 SER 30 37 37 SER SER B . n B 1 31 LEU 31 38 38 LEU LEU B . n B 1 32 VAL 32 39 39 VAL VAL B . n B 1 33 LYS 33 40 40 LYS LYS B . n B 1 34 LYS 34 41 41 LYS LYS B . n B 1 35 LEU 35 42 42 LEU LEU B . n B 1 36 LYS 36 43 43 LYS LYS B . n B 1 37 LYS 37 44 44 LYS LYS B . n B 1 38 THR 38 45 45 THR THR B . n B 1 39 GLY 39 46 46 GLY GLY B . n B 1 40 GLN 40 47 47 GLN GLN B . n B 1 41 LEU 41 48 48 LEU LEU B . n B 1 42 ASP 42 49 49 ASP ASP B . n B 1 43 GLU 43 50 50 GLU GLU B . n B 1 44 LEU 44 51 51 LEU LEU B . n B 1 45 GLU 45 52 52 GLU GLU B . n B 1 46 LYS 46 53 53 LYS LYS B . n B 1 47 ALA 47 54 54 ALA ALA B . n B 1 48 ILE 48 55 55 ILE ILE B . n B 1 49 THR 49 56 56 THR THR B . n B 1 50 THR 50 57 57 THR THR B . n B 1 51 GLN 51 58 58 GLN GLN B . n B 1 52 ASN 52 59 59 ASN ASN B . n B 1 53 VAL 53 60 60 VAL VAL B . n B 1 54 ASN 54 61 61 ASN ASN B . n B 1 55 THR 55 62 62 THR THR B . n B 1 56 LYS 56 63 63 LYS LYS B . n B 1 57 CYS 57 64 64 CYS CYS B . n B 1 58 ILE 58 65 65 ILE ILE B . n B 1 59 THR 59 66 66 THR THR B . n B 1 60 ILE 60 67 67 ILE ILE B . n B 1 61 PRO 61 68 68 PRO PRO B . n B 1 62 ARG 62 69 69 ARG ARG B . n B 1 63 SER 63 70 70 SER SER B . n B 1 64 LEU 64 71 71 LEU LEU B . n B 1 65 ASP 65 72 72 ASP ASP B . n B 1 66 GLY 66 73 73 GLY GLY B . n B 1 67 ARG 67 74 74 ARG ARG B . n B 1 68 LEU 68 75 75 LEU LEU B . n B 1 69 GLN 69 76 76 GLN GLN B . n B 1 70 VAL 70 77 77 VAL VAL B . n B 1 71 SER 71 78 78 SER SER B . n B 1 72 HIS 72 79 79 HIS HIS B . n B 1 73 ARG 73 80 80 ARG ARG B . n B 1 74 LYS 74 81 81 LYS LYS B . n B 1 75 GLY 75 82 82 GLY GLY B . n B 1 76 LEU 76 83 83 LEU LEU B . n B 1 77 PRO 77 84 84 PRO PRO B . n B 1 78 HIS 78 85 85 HIS HIS B . n B 1 79 VAL 79 86 86 VAL VAL B . n B 1 80 ILE 80 87 87 ILE ILE B . n B 1 81 TYR 81 88 88 TYR TYR B . n B 1 82 CYS 82 89 89 CYS CYS B . n B 1 83 ARG 83 90 90 ARG ARG B . n B 1 84 LEU 84 91 91 LEU LEU B . n B 1 85 TRP 85 92 92 TRP TRP B . n B 1 86 ARG 86 93 93 ARG ARG B . n B 1 87 TRP 87 94 94 TRP TRP B . n B 1 88 PRO 88 95 95 PRO PRO B . n B 1 89 ASP 89 96 96 ASP ASP B . n B 1 90 LEU 90 97 97 LEU LEU B . n B 1 91 HIS 91 98 98 HIS HIS B . n B 1 92 SER 92 99 99 SER SER B . n B 1 93 HIS 93 100 100 HIS HIS B . n B 1 94 HIS 94 101 101 HIS HIS B . n B 1 95 GLU 95 102 102 GLU GLU B . n B 1 96 LEU 96 103 103 LEU LEU B . n B 1 97 ARG 97 104 104 ARG ARG B . n B 1 98 ALA 98 105 105 ALA ALA B . n B 1 99 MET 99 106 106 MET MET B . n B 1 100 GLU 100 107 107 GLU GLU B . n B 1 101 LEU 101 108 108 LEU LEU B . n B 1 102 CYS 102 109 109 CYS CYS B . n B 1 103 GLU 103 110 110 GLU GLU B . n B 1 104 PHE 104 111 111 PHE PHE B . n B 1 105 ALA 105 112 112 ALA ALA B . n B 1 106 PHE 106 113 113 PHE PHE B . n B 1 107 ASN 107 114 114 ASN ASN B . n B 1 108 MET 108 115 115 MET MET B . n B 1 109 LYS 109 116 116 LYS LYS B . n B 1 110 LYS 110 117 117 LYS LYS B . n B 1 111 ASP 111 118 118 ASP ASP B . n B 1 112 GLU 112 119 119 GLU GLU B . n B 1 113 VAL 113 120 120 VAL VAL B . n B 1 114 CYS 114 121 121 CYS CYS B . n B 1 115 VAL 115 122 122 VAL VAL B . n B 1 116 ASN 116 123 123 ASN ASN B . n B 1 117 PRO 117 124 124 PRO PRO B . n B 1 118 TYR 118 125 125 TYR TYR B . n B 1 119 HIS 119 126 126 HIS HIS B . n B 1 120 TYR 120 127 127 TYR TYR B . n B 1 121 GLN 121 128 128 GLN GLN B . n B 1 122 ARG 122 129 129 ARG ARG B . n B 1 123 VAL 123 130 130 VAL VAL B . n B 1 124 GLU 124 131 131 GLU GLU B . n B 1 125 THR 125 132 132 THR THR B . n B 1 126 PRO 126 133 133 PRO PRO B . n B 1 127 VAL 127 134 134 VAL VAL B . n B 1 128 LEU 128 135 ? ? ? B . n C 2 1 DT 1 1 ? ? ? D . n C 2 2 DG 2 2 ? ? ? D . n C 2 3 DC 3 3 ? ? ? D . n C 2 4 DA 4 4 4 DA DA D . n C 2 5 DG 5 5 5 DG DG D . n C 2 6 DG 6 6 6 DG DG D . n C 2 7 DC 7 7 7 DC DC D . n C 2 8 DT 8 8 8 DT DT D . n C 2 9 DA 9 9 9 DA DA D . n C 2 10 DG 10 10 10 DG DG D . n C 2 11 DC 11 11 11 DC DC D . n C 2 12 DC 12 12 12 DC DC D . n C 2 13 DT 13 13 13 DT DT D . n C 2 14 DG 14 14 14 DG DG D . n C 2 15 DC 15 15 15 DC DC D . n C 2 16 DA 16 16 16 DA DA D . n D 2 1 DT 1 1 1 DT DT E . n D 2 2 DG 2 2 2 DG DG E . n D 2 3 DC 3 3 3 DC DC E . n D 2 4 DA 4 4 4 DA DA E . n D 2 5 DG 5 5 5 DG DG E . n D 2 6 DG 6 6 6 DG DG E . n D 2 7 DC 7 7 7 DC DC E . n D 2 8 DT 8 8 8 DT DT E . n D 2 9 DA 9 9 9 DA DA E . n D 2 10 DG 10 10 10 DG DG E . n D 2 11 DC 11 11 11 DC DC E . n D 2 12 DC 12 12 12 DC DC E . n D 2 13 DT 13 13 13 DT DT E . n D 2 14 DG 14 14 ? ? ? E . n D 2 15 DC 15 15 ? ? ? E . n D 2 16 DA 16 16 ? ? ? E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN 1 201 1 ZN ZN A . F 4 CL 1 202 1 CL CL A . G 3 ZN 1 201 2 ZN ZN B . H 5 HOH 1 301 13 HOH HOH A . H 5 HOH 2 302 9 HOH HOH A . H 5 HOH 3 303 1 HOH HOH A . H 5 HOH 4 304 26 HOH HOH A . H 5 HOH 5 305 11 HOH HOH A . H 5 HOH 6 306 10 HOH HOH A . H 5 HOH 7 307 36 HOH HOH A . H 5 HOH 8 308 32 HOH HOH A . H 5 HOH 9 309 62 HOH HOH A . H 5 HOH 10 310 54 HOH HOH A . H 5 HOH 11 311 8 HOH HOH A . H 5 HOH 12 312 29 HOH HOH A . H 5 HOH 13 313 34 HOH HOH A . H 5 HOH 14 314 78 HOH HOH A . H 5 HOH 15 315 27 HOH HOH A . H 5 HOH 16 316 57 HOH HOH A . H 5 HOH 17 317 23 HOH HOH A . H 5 HOH 18 318 24 HOH HOH A . H 5 HOH 19 319 5 HOH HOH A . H 5 HOH 20 320 33 HOH HOH A . H 5 HOH 21 321 56 HOH HOH A . H 5 HOH 22 322 77 HOH HOH A . H 5 HOH 23 323 35 HOH HOH A . H 5 HOH 24 324 58 HOH HOH A . H 5 HOH 25 325 12 HOH HOH A . H 5 HOH 26 326 7 HOH HOH A . H 5 HOH 27 327 31 HOH HOH A . H 5 HOH 28 328 51 HOH HOH A . H 5 HOH 29 329 2 HOH HOH A . H 5 HOH 30 330 21 HOH HOH A . H 5 HOH 31 331 55 HOH HOH A . H 5 HOH 32 332 20 HOH HOH A . H 5 HOH 33 333 3 HOH HOH A . H 5 HOH 34 334 53 HOH HOH A . H 5 HOH 35 335 52 HOH HOH A . H 5 HOH 36 336 80 HOH HOH A . H 5 HOH 37 337 81 HOH HOH A . H 5 HOH 38 338 22 HOH HOH A . I 5 HOH 1 301 18 HOH HOH B . I 5 HOH 2 302 38 HOH HOH B . I 5 HOH 3 303 17 HOH HOH B . I 5 HOH 4 304 79 HOH HOH B . I 5 HOH 5 305 6 HOH HOH B . I 5 HOH 6 306 64 HOH HOH B . I 5 HOH 7 307 66 HOH HOH B . I 5 HOH 8 308 46 HOH HOH B . I 5 HOH 9 309 48 HOH HOH B . I 5 HOH 10 310 45 HOH HOH B . I 5 HOH 11 311 25 HOH HOH B . I 5 HOH 12 312 37 HOH HOH B . I 5 HOH 13 313 42 HOH HOH B . I 5 HOH 14 314 15 HOH HOH B . I 5 HOH 15 315 4 HOH HOH B . I 5 HOH 16 316 47 HOH HOH B . I 5 HOH 17 317 59 HOH HOH B . I 5 HOH 18 318 14 HOH HOH B . I 5 HOH 19 319 44 HOH HOH B . I 5 HOH 20 320 43 HOH HOH B . I 5 HOH 21 321 40 HOH HOH B . I 5 HOH 22 322 28 HOH HOH B . I 5 HOH 23 323 63 HOH HOH B . I 5 HOH 24 324 41 HOH HOH B . I 5 HOH 25 325 19 HOH HOH B . I 5 HOH 26 326 65 HOH HOH B . I 5 HOH 27 327 68 HOH HOH B . I 5 HOH 28 328 16 HOH HOH B . J 5 HOH 1 101 69 HOH HOH D . J 5 HOH 2 102 76 HOH HOH D . K 5 HOH 1 101 71 HOH HOH E . K 5 HOH 2 102 30 HOH HOH E . K 5 HOH 3 103 39 HOH HOH E . K 5 HOH 4 104 73 HOH HOH E . K 5 HOH 5 105 49 HOH HOH E . K 5 HOH 6 106 61 HOH HOH E . K 5 HOH 7 107 70 HOH HOH E . K 5 HOH 8 108 60 HOH HOH E . K 5 HOH 9 109 74 HOH HOH E . K 5 HOH 10 110 72 HOH HOH E . K 5 HOH 11 111 67 HOH HOH E . K 5 HOH 12 112 50 HOH HOH E . K 5 HOH 13 113 75 HOH HOH E . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,H,J,K 1 2 B,G,I 2 1 B,G,I 2 3 A,C,D,E,F,H,J,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 -y+1/2,x,z+3/4 0.0000000000 -1.0000000000 0.0000000000 52.4950000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 54.3675000000 3 'crystal symmetry operation' 8_554 y,-x+1/2,z-3/4 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 52.4950000000 0.0000000000 0.0000000000 1.0000000000 -54.3675000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 57 ? A CYS 64 ? 1_555 ZN ? E ZN . ? A ZN 201 ? 1_555 SG ? A CYS 102 ? A CYS 109 ? 1_555 108.8 ? 2 SG ? A CYS 57 ? A CYS 64 ? 1_555 ZN ? E ZN . ? A ZN 201 ? 1_555 SG ? A CYS 114 ? A CYS 121 ? 1_555 106.9 ? 3 SG ? A CYS 102 ? A CYS 109 ? 1_555 ZN ? E ZN . ? A ZN 201 ? 1_555 SG ? A CYS 114 ? A CYS 121 ? 1_555 114.3 ? 4 SG ? A CYS 57 ? A CYS 64 ? 1_555 ZN ? E ZN . ? A ZN 201 ? 1_555 ND1 ? A HIS 119 ? A HIS 126 ? 1_555 104.0 ? 5 SG ? A CYS 102 ? A CYS 109 ? 1_555 ZN ? E ZN . ? A ZN 201 ? 1_555 ND1 ? A HIS 119 ? A HIS 126 ? 1_555 113.2 ? 6 SG ? A CYS 114 ? A CYS 121 ? 1_555 ZN ? E ZN . ? A ZN 201 ? 1_555 ND1 ? A HIS 119 ? A HIS 126 ? 1_555 108.9 ? 7 SG ? B CYS 57 ? B CYS 64 ? 1_555 ZN ? G ZN . ? B ZN 201 ? 1_555 SG ? B CYS 102 ? B CYS 109 ? 1_555 107.4 ? 8 SG ? B CYS 57 ? B CYS 64 ? 1_555 ZN ? G ZN . ? B ZN 201 ? 1_555 SG ? B CYS 114 ? B CYS 121 ? 1_555 107.3 ? 9 SG ? B CYS 102 ? B CYS 109 ? 1_555 ZN ? G ZN . ? B ZN 201 ? 1_555 SG ? B CYS 114 ? B CYS 121 ? 1_555 113.9 ? 10 SG ? B CYS 57 ? B CYS 64 ? 1_555 ZN ? G ZN . ? B ZN 201 ? 1_555 ND1 ? B HIS 119 ? B HIS 126 ? 1_555 104.4 ? 11 SG ? B CYS 102 ? B CYS 109 ? 1_555 ZN ? G ZN . ? B ZN 201 ? 1_555 ND1 ? B HIS 119 ? B HIS 126 ? 1_555 114.4 ? 12 SG ? B CYS 114 ? B CYS 121 ? 1_555 ZN ? G ZN . ? B ZN 201 ? 1_555 ND1 ? B HIS 119 ? B HIS 126 ? 1_555 108.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-11-15 2 'Structure model' 1 1 2017-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 7.1307 30.8741 -8.8997 -0.0139 -0.0264 -0.1390 -0.0127 -0.0413 -0.0707 1.8577 2.6262 2.4706 -0.1622 -0.4836 -0.7025 -0.0047 -0.0482 -0.1209 -0.0062 -0.0377 0.0051 0.2778 -0.4276 0.0424 'X-RAY DIFFRACTION' 2 ? refined 22.5315 56.4412 -21.3275 -0.1100 -0.1218 -0.1891 0.0263 -0.0758 0.0084 4.9206 3.9036 6.3902 -1.1159 -1.3451 -0.0209 0.0191 0.0064 0.2739 -0.2504 -0.0897 -0.1620 -0.2742 0.4081 0.0706 'X-RAY DIFFRACTION' 3 ? refined 1.0267 30.5975 12.2141 -0.1162 0.1565 -0.3283 -0.0861 -0.0370 -0.0278 4.0945 6.0982 8.2465 1.2005 -1.5414 -1.0156 0.0400 -0.0680 0.3461 0.5145 -0.2963 0.1677 0.0092 -0.4935 0.2563 'X-RAY DIFFRACTION' 4 ? refined -0.1323 31.1615 10.2496 -0.2550 0.1564 -0.3128 0.0652 0.0108 -0.0680 4.5545 8.0763 10.4808 2.0354 2.0332 -2.0543 0.0783 0.2482 0.2182 -0.1597 -0.3628 -0.1876 -0.2050 -0.8735 0.2844 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '{ A|* }' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '{ B|* }' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '{ D|* }' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '{ E|* }' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.3 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 111.01 108.30 2.71 0.30 N 2 1 "O4'" E DT 8 ? ? "C1'" E DT 8 ? ? N1 E DT 8 ? ? 110.79 108.30 2.49 0.30 N 3 1 "O4'" E DC 11 ? ? "C1'" E DC 11 ? ? N1 E DC 11 ? ? 110.54 108.30 2.24 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 78 ? ? 35.87 57.79 2 1 ARG A 93 ? ? -131.03 -52.59 3 1 ASN B 61 ? ? -90.50 55.19 4 1 SER B 78 ? ? 58.60 -112.44 5 1 ARG B 93 ? ? -128.81 -53.55 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 13 ? CG ? A LYS 6 CG 2 1 Y 1 A LYS 13 ? CD ? A LYS 6 CD 3 1 Y 1 A LYS 13 ? CE ? A LYS 6 CE 4 1 Y 1 A LYS 13 ? NZ ? A LYS 6 NZ 5 1 Y 1 A ARG 14 ? CG ? A ARG 7 CG 6 1 Y 1 A ARG 14 ? CD ? A ARG 7 CD 7 1 Y 1 A ARG 14 ? NE ? A ARG 7 NE 8 1 Y 1 A ARG 14 ? CZ ? A ARG 7 CZ 9 1 Y 1 A ARG 14 ? NH1 ? A ARG 7 NH1 10 1 Y 1 A ARG 14 ? NH2 ? A ARG 7 NH2 11 1 Y 1 A GLU 107 ? CG ? A GLU 100 CG 12 1 Y 1 A GLU 107 ? CD ? A GLU 100 CD 13 1 Y 1 A GLU 107 ? OE1 ? A GLU 100 OE1 14 1 Y 1 A GLU 107 ? OE2 ? A GLU 100 OE2 15 1 Y 1 A LEU 108 ? CG ? A LEU 101 CG 16 1 Y 1 A LEU 108 ? CD1 ? A LEU 101 CD1 17 1 Y 1 A LEU 108 ? CD2 ? A LEU 101 CD2 18 1 Y 1 A GLU 110 ? CG ? A GLU 103 CG 19 1 Y 1 A GLU 110 ? CD ? A GLU 103 CD 20 1 Y 1 A GLU 110 ? OE1 ? A GLU 103 OE1 21 1 Y 1 A GLU 110 ? OE2 ? A GLU 103 OE2 22 1 Y 1 A LYS 116 ? CG ? A LYS 109 CG 23 1 Y 1 A LYS 116 ? CD ? A LYS 109 CD 24 1 Y 1 A LYS 116 ? CE ? A LYS 109 CE 25 1 Y 1 A LYS 116 ? NZ ? A LYS 109 NZ 26 1 Y 1 B LYS 13 ? CG ? B LYS 6 CG 27 1 Y 1 B LYS 13 ? CD ? B LYS 6 CD 28 1 Y 1 B LYS 13 ? CE ? B LYS 6 CE 29 1 Y 1 B LYS 13 ? NZ ? B LYS 6 NZ 30 1 Y 1 B GLN 26 ? CG ? B GLN 19 CG 31 1 Y 1 B GLN 26 ? CD ? B GLN 19 CD 32 1 Y 1 B GLN 26 ? OE1 ? B GLN 19 OE1 33 1 Y 1 B GLN 26 ? NE2 ? B GLN 19 NE2 34 1 Y 1 B LYS 29 ? CG ? B LYS 22 CG 35 1 Y 1 B LYS 29 ? CD ? B LYS 22 CD 36 1 Y 1 B LYS 29 ? CE ? B LYS 22 CE 37 1 Y 1 B LYS 29 ? NZ ? B LYS 22 NZ 38 1 Y 1 B ARG 104 ? CG ? B ARG 97 CG 39 1 Y 1 B ARG 104 ? CD ? B ARG 97 CD 40 1 Y 1 B ARG 104 ? NE ? B ARG 97 NE 41 1 Y 1 B ARG 104 ? CZ ? B ARG 97 CZ 42 1 Y 1 B ARG 104 ? NH1 ? B ARG 97 NH1 43 1 Y 1 B ARG 104 ? NH2 ? B ARG 97 NH2 44 1 Y 1 B LEU 108 ? CG ? B LEU 101 CG 45 1 Y 1 B LEU 108 ? CD1 ? B LEU 101 CD1 46 1 Y 1 B LEU 108 ? CD2 ? B LEU 101 CD2 47 1 Y 1 B LYS 116 ? CG ? B LYS 109 CG 48 1 Y 1 B LYS 116 ? CD ? B LYS 109 CD 49 1 Y 1 B LYS 116 ? CE ? B LYS 109 CE 50 1 Y 1 B LYS 116 ? NZ ? B LYS 109 NZ 51 1 Y 1 B VAL 134 ? CG1 ? B VAL 127 CG1 52 1 Y 1 B VAL 134 ? CG2 ? B VAL 127 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 8 ? A GLY 1 2 1 Y 1 A ALA 9 ? A ALA 2 3 1 Y 1 B GLY 8 ? B GLY 1 4 1 Y 1 B ALA 9 ? B ALA 2 5 1 Y 1 B LEU 135 ? B LEU 128 6 1 Y 1 D DT 1 ? C DT 1 7 1 Y 1 D DG 2 ? C DG 2 8 1 Y 1 D DC 3 ? C DC 3 9 1 Y 1 E DG 14 ? D DG 14 10 1 Y 1 E DC 15 ? D DC 15 11 1 Y 1 E DA 16 ? D DA 16 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5ODG 'double helix' 5ODG 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DA 4 1_555 D DT 13 1_555 0.057 -0.033 0.063 6.241 -15.577 3.863 1 D_DA4:DT13_E D 4 ? E 13 ? 20 1 1 C DG 5 1_555 D DC 12 1_555 -0.098 -0.180 0.064 4.464 -19.596 -0.804 2 D_DG5:DC12_E D 5 ? E 12 ? 19 1 1 C DG 6 1_555 D DC 11 1_555 -0.524 -0.201 0.181 -1.693 -11.401 -2.055 3 D_DG6:DC11_E D 6 ? E 11 ? 19 1 1 C DC 7 1_555 D DG 10 1_555 0.296 -0.128 0.336 -8.068 -10.424 -2.138 4 D_DC7:DG10_E D 7 ? E 10 ? 19 1 1 C DT 8 1_555 D DA 9 1_555 -0.269 -0.169 0.206 -4.716 -13.187 -0.200 5 D_DT8:DA9_E D 8 ? E 9 ? 20 1 1 C DA 9 1_555 D DT 8 1_555 0.147 -0.188 0.230 1.000 -12.691 0.171 6 D_DA9:DT8_E D 9 ? E 8 ? 20 1 1 C DG 10 1_555 D DC 7 1_555 -0.154 -0.147 0.504 5.712 -13.096 -2.172 7 D_DG10:DC7_E D 10 ? E 7 ? 19 1 1 C DC 11 1_555 D DG 6 1_555 -0.018 -0.181 0.255 1.373 -11.955 -2.685 8 D_DC11:DG6_E D 11 ? E 6 ? 19 1 1 C DC 12 1_555 D DG 5 1_555 0.112 -0.032 0.202 -4.361 -6.450 1.041 9 D_DC12:DG5_E D 12 ? E 5 ? 19 1 1 C DT 13 1_555 D DA 4 1_555 0.258 -0.130 0.484 -2.325 -15.152 11.370 10 D_DT13:DA4_E D 13 ? E 4 ? 20 1 1 C DG 14 1_555 D DC 3 1_555 -0.293 -0.087 0.180 2.275 -17.153 3.236 11 D_DG14:DC3_E D 14 ? E 3 ? 19 1 1 C DC 15 1_555 D DG 2 1_555 0.354 -0.134 -0.089 -0.058 -16.610 3.730 12 D_DC15:DG2_E D 15 ? E 2 ? 19 1 1 C DA 16 1_555 D DT 1 1_555 0.341 0.310 0.466 2.968 -25.490 19.014 13 D_DA16:DT1_E D 16 ? E 1 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DA 4 1_555 D DT 13 1_555 C DG 5 1_555 D DC 12 1_555 0.185 -0.335 3.349 -2.877 5.715 30.782 -1.704 -0.888 3.206 10.623 5.347 31.424 1 DD_DA4DG5:DC12DT13_EE D 4 ? E 13 ? D 5 ? E 12 ? 1 C DG 5 1_555 D DC 12 1_555 C DG 6 1_555 D DC 11 1_555 -0.669 -0.606 3.257 -5.623 6.542 36.057 -1.828 0.301 3.168 10.387 8.928 37.041 2 DD_DG5DG6:DC11DC12_EE D 5 ? E 12 ? D 6 ? E 11 ? 1 C DG 6 1_555 D DC 11 1_555 C DC 7 1_555 D DG 10 1_555 -0.781 -0.341 3.498 -1.724 0.475 37.494 -0.596 0.972 3.525 0.738 2.680 37.535 3 DD_DG6DC7:DG10DC11_EE D 6 ? E 11 ? D 7 ? E 10 ? 1 C DC 7 1_555 D DG 10 1_555 C DT 8 1_555 D DA 9 1_555 -0.119 0.057 3.148 2.870 4.610 28.518 -0.863 0.845 3.093 9.252 -5.760 29.019 4 DD_DC7DT8:DA9DG10_EE D 7 ? E 10 ? D 8 ? E 9 ? 1 C DT 8 1_555 D DA 9 1_555 C DA 9 1_555 D DT 8 1_555 0.000 2.722 3.234 -2.083 -9.137 55.078 3.396 -0.111 2.784 -9.801 2.234 55.808 5 DD_DT8DA9:DT8DA9_EE D 8 ? E 9 ? D 9 ? E 8 ? 1 C DA 9 1_555 D DT 8 1_555 C DG 10 1_555 D DC 7 1_555 -0.092 0.052 3.161 -3.602 4.660 29.016 -0.855 -0.559 3.119 9.182 7.097 29.595 6 DD_DA9DG10:DC7DT8_EE D 9 ? E 8 ? D 10 ? E 7 ? 1 C DG 10 1_555 D DC 7 1_555 C DC 11 1_555 D DG 6 1_555 0.164 -0.579 3.378 0.569 2.285 32.700 -1.429 -0.190 3.333 4.052 -1.008 32.782 7 DD_DG10DC11:DG6DC7_EE D 10 ? E 7 ? D 11 ? E 6 ? 1 C DC 11 1_555 D DG 6 1_555 C DC 12 1_555 D DG 5 1_555 0.884 -0.195 3.434 3.838 7.077 38.396 -1.186 -0.832 3.415 10.618 -5.759 39.199 8 DD_DC11DC12:DG5DG6_EE D 11 ? E 6 ? D 12 ? E 5 ? 1 C DC 12 1_555 D DG 5 1_555 C DT 13 1_555 D DA 4 1_555 0.526 -0.148 3.256 -0.811 1.421 30.977 -0.548 -1.138 3.231 2.659 1.517 31.019 9 DD_DC12DT13:DA4DG5_EE D 12 ? E 5 ? D 13 ? E 4 ? 1 C DT 13 1_555 D DA 4 1_555 C DG 14 1_555 D DC 3 1_555 -0.541 0.155 3.162 1.215 8.744 33.984 -1.016 1.074 3.085 14.655 -2.036 35.079 10 DD_DT13DG14:DC3DA4_EE D 13 ? E 4 ? D 14 ? E 3 ? 1 C DG 14 1_555 D DC 3 1_555 C DC 15 1_555 D DG 2 1_555 -0.478 -0.330 3.348 -0.904 -1.286 38.841 -0.335 0.606 3.367 -1.933 1.359 38.872 11 DD_DG14DC15:DG2DC3_EE D 14 ? E 3 ? D 15 ? E 2 ? 1 C DC 15 1_555 D DG 2 1_555 C DA 16 1_555 D DT 1 1_555 0.207 1.052 3.288 -4.019 9.951 39.550 0.369 -0.755 3.408 14.387 5.811 40.923 12 DD_DC15DA16:DT1DG2_EE D 15 ? E 2 ? D 16 ? E 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 'CHLORIDE ION' CL 5 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 SAXS monomeric 2 1 'gel filtration' monomeric #