HEADER TRANSCRIPTION 05-JUL-17 5ODG TITLE CRYSTAL STRUCTURE OF SMAD3-MH1 BOUND TO THE GGCT SITE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MH1 DOMAIN, UNP RESIDUES 11-135; COMPND 5 SYNONYM: HMAD-3,JV15-2,SMAD FAMILY MEMBER 3,HSMAD3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*CP*AP*GP*GP*CP*TP*AP*GP*CP*CP*TP*GP*CP*A)-3'); COMPND 9 CHAIN: D, E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMAD3, MADH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS SMADS, TRANSCRIPTION FACTOR, DNA COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.KACZMARSKA,J.A.MARQUEZ,M.J.MACIAS REVDAT 2 27-DEC-17 5ODG 1 JRNL REVDAT 1 15-NOV-17 5ODG 0 JRNL AUTH P.MARTIN-MALPARTIDA,M.BATET,Z.KACZMARSKA,R.FREIER,T.GOMES, JRNL AUTH 2 E.ARAGON,Y.ZOU,Q.WANG,Q.XI,L.RUIZ,A.VEA,J.A.MARQUEZ, JRNL AUTH 3 J.MASSAGUE,M.J.MACIAS JRNL TITL STRUCTURAL BASIS FOR GENOME WIDE RECOGNITION OF 5-BP GC JRNL TITL 2 MOTIFS BY SMAD TRANSCRIPTION FACTORS. JRNL REF NAT COMMUN V. 8 2070 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29234012 JRNL DOI 10.1038/S41467-017-02054-6 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 22057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1075 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.22 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.42 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2904 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2303 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2776 REMARK 3 BIN R VALUE (WORKING SET) : 0.2288 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.41 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 128 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2026 REMARK 3 NUCLEIC ACID ATOMS : 533 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.63490 REMARK 3 B22 (A**2) : -5.63490 REMARK 3 B33 (A**2) : 11.26970 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.320 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.201 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.176 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.202 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.177 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2668 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3712 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 875 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 49 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 319 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2668 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 339 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2750 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.17 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.37 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 7.1307 30.8741 -8.8997 REMARK 3 T TENSOR REMARK 3 T11: -0.0139 T22: -0.0264 REMARK 3 T33: -0.1390 T12: -0.0127 REMARK 3 T13: -0.0413 T23: -0.0707 REMARK 3 L TENSOR REMARK 3 L11: 1.8577 L22: 2.6262 REMARK 3 L33: 2.4706 L12: -0.1622 REMARK 3 L13: -0.4836 L23: -0.7025 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.0482 S13: -0.1209 REMARK 3 S21: -0.0062 S22: -0.0377 S23: 0.0051 REMARK 3 S31: 0.2778 S32: -0.4276 S33: 0.0424 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 22.5315 56.4412 -21.3275 REMARK 3 T TENSOR REMARK 3 T11: -0.1100 T22: -0.1218 REMARK 3 T33: -0.1891 T12: 0.0263 REMARK 3 T13: -0.0758 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 4.9206 L22: 3.9036 REMARK 3 L33: 6.3902 L12: -1.1159 REMARK 3 L13: -1.3451 L23: -0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.0064 S13: 0.2739 REMARK 3 S21: -0.2504 S22: -0.0897 S23: -0.1620 REMARK 3 S31: -0.2742 S32: 0.4081 S33: 0.0706 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.0267 30.5975 12.2141 REMARK 3 T TENSOR REMARK 3 T11: -0.1162 T22: 0.1565 REMARK 3 T33: -0.3283 T12: -0.0861 REMARK 3 T13: -0.0370 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 4.0945 L22: 6.0982 REMARK 3 L33: 8.2465 L12: 1.2005 REMARK 3 L13: -1.5414 L23: -1.0156 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: -0.0680 S13: 0.3461 REMARK 3 S21: 0.5145 S22: -0.2963 S23: 0.1677 REMARK 3 S31: 0.0092 S32: -0.4935 S33: 0.2563 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { E|* } REMARK 3 ORIGIN FOR THE GROUP (A): -0.1323 31.1615 10.2496 REMARK 3 T TENSOR REMARK 3 T11: -0.2550 T22: 0.1564 REMARK 3 T33: -0.3128 T12: 0.0652 REMARK 3 T13: 0.0108 T23: -0.0680 REMARK 3 L TENSOR REMARK 3 L11: 4.5545 L22: 8.0763 REMARK 3 L33: 10.4808 L12: 2.0354 REMARK 3 L13: 2.0332 L23: -2.0543 REMARK 3 S TENSOR REMARK 3 S11: 0.0783 S12: 0.2482 S13: 0.2182 REMARK 3 S21: -0.1597 S22: -0.3628 S23: -0.1876 REMARK 3 S31: -0.2050 S32: -0.8735 S33: 0.2844 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ODG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22058 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.770 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.64 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M SODIUM POTASSIUM PHOSPHATE, 0.1 REMARK 280 M BISTRIS PROPANE PH 6.5, 20% PEG 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.49500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.49500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.24500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.12250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.49500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.36750 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.49500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.49500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.24500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 52.49500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 54.36750 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 52.49500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 18.12250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 52.49500 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 54.36750 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 52.49500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -54.36750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 GLY B 8 REMARK 465 ALA B 9 REMARK 465 LEU B 135 REMARK 465 DT D 1 REMARK 465 DG D 2 REMARK 465 DC D 3 REMARK 465 DG E 14 REMARK 465 DC E 15 REMARK 465 DA E 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 LEU A 108 CG CD1 CD2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 GLN B 26 CG CD OE1 NE2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 108 CG CD1 CD2 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 VAL B 134 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 5 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT E 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC E 11 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 78 57.79 35.87 REMARK 500 ARG A 93 -52.59 -131.03 REMARK 500 ASN B 61 55.19 -90.50 REMARK 500 SER B 78 -112.44 58.60 REMARK 500 ARG B 93 -53.55 -128.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 64 SG REMARK 620 2 CYS A 109 SG 108.8 REMARK 620 3 CYS A 121 SG 106.9 114.3 REMARK 620 4 HIS A 126 ND1 104.0 113.2 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 64 SG REMARK 620 2 CYS B 109 SG 107.4 REMARK 620 3 CYS B 121 SG 107.3 113.9 REMARK 620 4 HIS B 126 ND1 104.4 114.4 108.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5OD6 RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEXED WITH GGCGC SITE DBREF 5ODG A 11 135 UNP P84022 SMAD3_HUMAN 11 135 DBREF 5ODG B 11 135 UNP P84022 SMAD3_HUMAN 11 135 DBREF 5ODG D 1 16 PDB 5ODG 5ODG 1 16 DBREF 5ODG E 1 16 PDB 5ODG 5ODG 1 16 SEQADV 5ODG GLY A 8 UNP P84022 EXPRESSION TAG SEQADV 5ODG ALA A 9 UNP P84022 EXPRESSION TAG SEQADV 5ODG MET A 10 UNP P84022 EXPRESSION TAG SEQADV 5ODG GLY B 8 UNP P84022 EXPRESSION TAG SEQADV 5ODG ALA B 9 UNP P84022 EXPRESSION TAG SEQADV 5ODG MET B 10 UNP P84022 EXPRESSION TAG SEQRES 1 A 128 GLY ALA MET ILE VAL LYS ARG LEU LEU GLY TRP LYS LYS SEQRES 2 A 128 GLY GLU GLN ASN GLY GLN GLU GLU LYS TRP CYS GLU LYS SEQRES 3 A 128 ALA VAL LYS SER LEU VAL LYS LYS LEU LYS LYS THR GLY SEQRES 4 A 128 GLN LEU ASP GLU LEU GLU LYS ALA ILE THR THR GLN ASN SEQRES 5 A 128 VAL ASN THR LYS CYS ILE THR ILE PRO ARG SER LEU ASP SEQRES 6 A 128 GLY ARG LEU GLN VAL SER HIS ARG LYS GLY LEU PRO HIS SEQRES 7 A 128 VAL ILE TYR CYS ARG LEU TRP ARG TRP PRO ASP LEU HIS SEQRES 8 A 128 SER HIS HIS GLU LEU ARG ALA MET GLU LEU CYS GLU PHE SEQRES 9 A 128 ALA PHE ASN MET LYS LYS ASP GLU VAL CYS VAL ASN PRO SEQRES 10 A 128 TYR HIS TYR GLN ARG VAL GLU THR PRO VAL LEU SEQRES 1 B 128 GLY ALA MET ILE VAL LYS ARG LEU LEU GLY TRP LYS LYS SEQRES 2 B 128 GLY GLU GLN ASN GLY GLN GLU GLU LYS TRP CYS GLU LYS SEQRES 3 B 128 ALA VAL LYS SER LEU VAL LYS LYS LEU LYS LYS THR GLY SEQRES 4 B 128 GLN LEU ASP GLU LEU GLU LYS ALA ILE THR THR GLN ASN SEQRES 5 B 128 VAL ASN THR LYS CYS ILE THR ILE PRO ARG SER LEU ASP SEQRES 6 B 128 GLY ARG LEU GLN VAL SER HIS ARG LYS GLY LEU PRO HIS SEQRES 7 B 128 VAL ILE TYR CYS ARG LEU TRP ARG TRP PRO ASP LEU HIS SEQRES 8 B 128 SER HIS HIS GLU LEU ARG ALA MET GLU LEU CYS GLU PHE SEQRES 9 B 128 ALA PHE ASN MET LYS LYS ASP GLU VAL CYS VAL ASN PRO SEQRES 10 B 128 TYR HIS TYR GLN ARG VAL GLU THR PRO VAL LEU SEQRES 1 D 16 DT DG DC DA DG DG DC DT DA DG DC DC DT SEQRES 2 D 16 DG DC DA SEQRES 1 E 16 DT DG DC DA DG DG DC DT DA DG DC DC DT SEQRES 2 E 16 DG DC DA HET ZN A 201 1 HET CL A 202 1 HET ZN B 201 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 5 ZN 2(ZN 2+) FORMUL 6 CL CL 1- FORMUL 8 HOH *81(H2 O) HELIX 1 AA1 MET A 10 GLY A 17 1 8 HELIX 2 AA2 ASN A 24 THR A 45 1 22 HELIX 3 AA3 GLN A 47 GLN A 58 1 12 HELIX 4 AA4 LEU A 83 ARG A 93 1 11 HELIX 5 AA5 SER A 99 HIS A 101 5 3 HELIX 6 AA6 ALA A 112 LYS A 116 5 5 HELIX 7 AA7 ASN A 123 TYR A 125 5 3 HELIX 8 AA8 ILE B 11 GLY B 17 1 7 HELIX 9 AA9 ASN B 24 GLY B 46 1 23 HELIX 10 AB1 GLN B 47 GLN B 58 1 12 HELIX 11 AB2 LEU B 83 ARG B 93 1 11 HELIX 12 AB3 SER B 99 HIS B 101 5 3 HELIX 13 AB4 ALA B 112 LYS B 116 5 5 HELIX 14 AB5 ASN B 123 TYR B 125 5 3 SHEET 1 AA1 2 THR A 66 PRO A 68 0 SHEET 2 AA1 2 GLU A 119 CYS A 121 -1 O VAL A 120 N ILE A 67 SHEET 1 AA2 2 LEU A 75 VAL A 77 0 SHEET 2 AA2 2 ARG A 80 GLY A 82 -1 O GLY A 82 N LEU A 75 SHEET 1 AA3 2 LEU A 103 ALA A 105 0 SHEET 2 AA3 2 TYR A 127 ARG A 129 -1 O GLN A 128 N ARG A 104 SHEET 1 AA4 2 THR B 66 PRO B 68 0 SHEET 2 AA4 2 GLU B 119 CYS B 121 -1 O VAL B 120 N ILE B 67 SHEET 1 AA5 2 LEU B 75 VAL B 77 0 SHEET 2 AA5 2 ARG B 80 GLY B 82 -1 O GLY B 82 N LEU B 75 SHEET 1 AA6 2 LEU B 103 ALA B 105 0 SHEET 2 AA6 2 TYR B 127 ARG B 129 -1 O GLN B 128 N ARG B 104 LINK SG CYS A 64 ZN ZN A 201 1555 1555 2.44 LINK SG CYS A 109 ZN ZN A 201 1555 1555 2.23 LINK SG CYS A 121 ZN ZN A 201 1555 1555 2.37 LINK ND1 HIS A 126 ZN ZN A 201 1555 1555 2.05 LINK SG CYS B 64 ZN ZN B 201 1555 1555 2.45 LINK SG CYS B 109 ZN ZN B 201 1555 1555 2.30 LINK SG CYS B 121 ZN ZN B 201 1555 1555 2.35 LINK ND1 HIS B 126 ZN ZN B 201 1555 1555 1.99 SITE 1 AC1 4 CYS A 64 CYS A 109 CYS A 121 HIS A 126 SITE 1 AC2 3 CYS A 64 HOH A 322 HOH A 336 SITE 1 AC3 4 CYS B 64 CYS B 109 CYS B 121 HIS B 126 CRYST1 104.990 104.990 72.490 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013795 0.00000