HEADER TRANSPORT PROTEIN 07-JUL-17 5OEI TITLE R. PALUSTRIS RPA4515 WITH OXOADIPATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN FAMILY UPF0065:TAT PATHWAY SIGNAL; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 258594; SOURCE 4 STRAIN: ATCC BAA-98 / CGA009; SOURCE 5 ATCC: BAA-98; SOURCE 6 GENE: RPA4515; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TOP10 (DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBAD-HISB KEYWDS TRIPARTITE TRICARBOXYLATE TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.ROSA,J.RAFFERTY,D.KELLY,S.R.DIX REVDAT 4 17-JAN-24 5OEI 1 REMARK REVDAT 3 14-MAR-18 5OEI 1 SOURCE REVDAT 2 27-DEC-17 5OEI 1 JRNL REVDAT 1 08-NOV-17 5OEI 0 JRNL AUTH L.T.ROSA,S.R.DIX,J.B.RAFFERTY,D.J.KELLY JRNL TITL STRUCTURAL BASIS FOR HIGH-AFFINITY ADIPATE BINDING TO ADPC JRNL TITL 2 (RPA4515), AN ORPHAN PERIPLASMIC-BINDING PROTEIN FROM THE JRNL TITL 3 TRIPARTITE TRICARBOXYLATE TRANSPORTER (TTT) FAMILY IN JRNL TITL 4 RHODOPSEUDOMONAS PALUSTRIS. JRNL REF FEBS J. V. 284 4262 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 29082669 JRNL DOI 10.1111/FEBS.14304 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1671 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2253 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2242 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : 1.39000 REMARK 3 B33 (A**2) : -0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2330 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2187 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3185 ; 1.961 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5056 ; 1.050 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 6.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;32.123 ;22.317 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;12.987 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.312 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2563 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 459 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1196 ; 1.512 ; 1.688 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1195 ; 1.512 ; 1.687 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1492 ; 2.075 ; 2.520 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1493 ; 2.074 ; 2.522 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1132 ; 2.648 ; 2.056 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1132 ; 2.642 ; 2.056 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1694 ; 3.908 ; 2.960 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2412 ; 5.443 ;20.712 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2412 ; 5.438 ;20.713 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OEI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 59.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMMONIUM SULPHATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 5, VAPOR DIFFUSION, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.26850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.26850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.65700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 84.23400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.65700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 84.23400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.26850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.65700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.23400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.26850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.65700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 84.23400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 GLY A 11 REMARK 465 MET A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 MET A 15 REMARK 465 THR A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 GLN A 19 REMARK 465 GLN A 20 REMARK 465 MET A 21 REMARK 465 GLY A 22 REMARK 465 ARG A 23 REMARK 465 ASP A 24 REMARK 465 LEU A 25 REMARK 465 TYR A 26 REMARK 465 ASP A 27 REMARK 465 ASP A 28 REMARK 465 ASP A 29 REMARK 465 ASP A 30 REMARK 465 LYS A 31 REMARK 465 ASP A 32 REMARK 465 PRO A 33 REMARK 465 SER A 34 REMARK 465 SER A 35 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 36 CG OD1 OD2 REMARK 470 LEU A 334 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 309 O HOH A 501 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 516 O HOH A 516 3657 0.69 REMARK 500 O HOH A 602 O HOH A 602 3557 1.38 REMARK 500 O HOH A 501 O HOH A 501 3657 1.68 REMARK 500 OE1 GLU A 67 OE1 GLU A 67 4577 1.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 81 CD GLU A 81 OE1 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 230 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 109 -38.86 -142.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OOG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 DBREF 5OEI A 36 334 UNP Q6N193 Q6N193_RHOPA 37 335 SEQADV 5OEI MET A 1 UNP Q6N193 INITIATING METHIONINE SEQADV 5OEI GLY A 2 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI GLY A 3 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI SER A 4 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI HIS A 5 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI HIS A 6 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI HIS A 7 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI HIS A 8 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI HIS A 9 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI HIS A 10 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI GLY A 11 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI MET A 12 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI ALA A 13 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI SER A 14 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI MET A 15 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI THR A 16 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI GLY A 17 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI GLY A 18 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI GLN A 19 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI GLN A 20 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI MET A 21 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI GLY A 22 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI ARG A 23 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI ASP A 24 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI LEU A 25 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI TYR A 26 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI ASP A 27 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI ASP A 28 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI ASP A 29 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI ASP A 30 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI LYS A 31 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI ASP A 32 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI PRO A 33 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI SER A 34 UNP Q6N193 EXPRESSION TAG SEQADV 5OEI SER A 35 UNP Q6N193 EXPRESSION TAG SEQRES 1 A 334 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 334 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 A 334 ASP ASP ASP ASP LYS ASP PRO SER SER ASP TRP PRO THR SEQRES 4 A 334 ARG GLN VAL THR LEU VAL VAL PRO PHE THR SER GLY GLY SEQRES 5 A 334 THR THR ASP MET LEU ALA ARG LEU ILE ALA ALA ARG LEU SEQRES 6 A 334 SER GLU HIS TYR GLY GLN SER PHE VAL ILE ASP ASN ARG SEQRES 7 A 334 SER GLY GLU SER GLY ASN ILE ALA ALA SER TYR VAL ALA SEQRES 8 A 334 LYS VAL PRO ALA ASP GLY TYR THR PHE ILE ILE GLY THR SEQRES 9 A 334 PRO GLY ILE HIS ALA THR ASN ARG LEU VAL TYR ARG THR SEQRES 10 A 334 MET GLY TYR ASP PRO ALA THR ASP PHE THR PRO VAL ILE SEQRES 11 A 334 VAL ILE ALA ARG VAL PRO ASN LEU LEU SER VAL THR LYS SEQRES 12 A 334 SER LEU PRO VAL THR SER VAL ALA ASP LEU ILE SER TYR SEQRES 13 A 334 ALA ARG GLN ARG PRO ARG GLU LEU PHE TYR GLY VAL SER SEQRES 14 A 334 ALA LEU GLY SER THR GLY HIS LEU SER THR GLU LEU PHE SEQRES 15 A 334 LYS THR MET THR GLY VAL GLU ILE THR ALA VAL PRO TYR SEQRES 16 A 334 LYS GLY SER ALA PRO MET LEU ARG ASP LEU ALA GLU GLY SEQRES 17 A 334 ARG VAL HIS LEU THR ILE ASP ASN LEU PRO ALA SER LYS SEQRES 18 A 334 PRO LEU LEU GLU ALA GLY GLU ILE ARG PRO LEU ALA VAL SEQRES 19 A 334 THR THR ALA LYS ARG TRP PRO PRO LEU SER HIS LEU PRO SEQRES 20 A 334 THR ILE ALA GLU ALA GLY VAL PRO GLY TYR GLU THR ALA SEQRES 21 A 334 SER TRP PHE THR VAL GLY ALA PRO ARG GLY THR PRO THR SEQRES 22 A 334 GLU ILE VAL THR SER LEU ASN THR THR VAL ALA ALA PHE SEQRES 23 A 334 LEU GLY SER ASP SER GLY THR VAL LYS LEU ARG GLU ILE SEQRES 24 A 334 GLY ALA GLU PRO GLY GLY GLY SER PRO GLN ASP MET GLN SEQRES 25 A 334 ARG HIS VAL GLU ALA GLU ILE ALA ARG TRP GLU LYS VAL SEQRES 26 A 334 ALA LYS THR ALA GLY ILE ALA PRO LEU HET OOG A 401 11 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET GOL A 407 6 HETNAM OOG 2-OXOADIPIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 OOG C6 H8 O5 FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *111(H2 O) HELIX 1 AA1 GLY A 52 GLY A 70 1 19 HELIX 2 AA2 GLY A 80 SER A 82 5 3 HELIX 3 AA3 GLY A 83 ALA A 91 1 9 HELIX 4 AA4 THR A 104 ALA A 109 1 6 HELIX 5 AA5 THR A 110 VAL A 114 5 5 HELIX 6 AA6 ASP A 121 ASP A 125 1 5 HELIX 7 AA7 SER A 149 GLN A 159 1 11 HELIX 8 AA8 SER A 173 GLY A 187 1 15 HELIX 9 AA9 GLY A 197 GLU A 207 1 11 HELIX 10 AB1 LEU A 217 ALA A 226 1 10 HELIX 11 AB2 TRP A 240 SER A 244 5 5 HELIX 12 AB3 PRO A 272 SER A 289 1 18 HELIX 13 AB4 SER A 289 ILE A 299 1 11 HELIX 14 AB5 SER A 307 GLY A 330 1 24 SHEET 1 AA1 6 PHE A 73 ASN A 77 0 SHEET 2 AA1 6 VAL A 42 VAL A 46 1 N LEU A 44 O VAL A 74 SHEET 3 AA1 6 THR A 99 GLY A 103 1 O PHE A 100 N VAL A 45 SHEET 4 AA1 6 SER A 261 PRO A 268 -1 O GLY A 266 N ILE A 101 SHEET 5 AA1 6 PHE A 126 VAL A 135 -1 N VAL A 135 O SER A 261 SHEET 6 AA1 6 GLU A 302 GLY A 305 -1 O GLU A 302 N ARG A 134 SHEET 1 AA2 5 THR A 191 PRO A 194 0 SHEET 2 AA2 5 PHE A 165 VAL A 168 1 N TYR A 166 O THR A 191 SHEET 3 AA2 5 LEU A 212 ASN A 216 1 O LEU A 212 N GLY A 167 SHEET 4 AA2 5 ASN A 137 THR A 142 -1 N LEU A 138 O ASP A 215 SHEET 5 AA2 5 ILE A 229 VAL A 234 -1 O ALA A 233 N LEU A 139 CISPEP 1 TRP A 37 PRO A 38 0 -4.80 SITE 1 AC1 13 PHE A 48 GLY A 52 THR A 53 THR A 54 SITE 2 AC1 13 SER A 169 SER A 173 THR A 174 SER A 198 SITE 3 AC1 13 ASN A 216 SER A 261 HOH A 543 HOH A 560 SITE 4 AC1 13 HOH A 580 SITE 1 AC2 6 GLY A 80 GLU A 81 ARG A 158 LYS A 196 SITE 2 AC2 6 HOH A 544 HOH A 594 SITE 1 AC3 8 THR A 127 ARG A 269 GLY A 270 SER A 307 SITE 2 AC3 8 GLN A 309 ARG A 313 HOH A 517 HOH A 587 SITE 1 AC4 7 ARG A 64 GLU A 67 HIS A 68 PHE A 286 SITE 2 AC4 7 SER A 291 GLY A 292 LYS A 295 SITE 1 AC5 2 ARG A 160 LYS A 324 SITE 1 AC6 2 LYS A 143 ARG A 230 SITE 1 AC7 7 ARG A 162 GLY A 256 TYR A 257 GLU A 258 SITE 2 AC7 7 ARG A 321 VAL A 325 HOH A 523 CRYST1 47.314 168.468 82.537 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012116 0.00000