HEADER TRANSCRIPTION 09-JUL-17 5OEN TITLE CRYSTAL STRUCTURE OF STAT2 IN COMPLEX WITH IRF9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON REGULATORY FACTOR 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 206-376; COMPND 5 SYNONYM: IRF-9,IFN-ALPHA-RESPONSIVE TRANSCRIPTION FACTOR SUBUNIT, COMPND 6 ISGF3 P48 SUBUNIT,INTERFERON-STIMULATED GENE FACTOR 3 GAMMA,ISGF-3 COMPND 7 GAMMA,TRANSCRIPTIONAL REGULATOR ISGF3 SUBUNIT GAMMA; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 141-315; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IRF9, ISGF3G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: STAT2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS STAT2, IRF9, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.RENGACHARI,D.PANNE REVDAT 3 17-JAN-24 5OEN 1 REMARK REVDAT 2 31-JAN-18 5OEN 1 JRNL REVDAT 1 24-JAN-18 5OEN 0 JRNL AUTH S.RENGACHARI,S.GROISS,J.M.DEVOS,E.CARON,N.GRANDVAUX,D.PANNE JRNL TITL STRUCTURAL BASIS OF STAT2 RECOGNITION BY IRF9 REVEALS JRNL TITL 2 MOLECULAR INSIGHTS INTO ISGF3 FUNCTION. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E601 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29317535 JRNL DOI 10.1073/PNAS.1718426115 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 7469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.190 REMARK 3 FREE R VALUE TEST SET COUNT : 761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1179 - 4.9545 0.95 1472 149 0.2468 0.2835 REMARK 3 2 4.9545 - 3.9348 0.96 1437 187 0.2279 0.2757 REMARK 3 3 3.9348 - 3.4381 0.93 1408 140 0.2621 0.3367 REMARK 3 4 3.4381 - 3.1240 0.85 1268 161 0.2847 0.3343 REMARK 3 5 3.1240 - 2.9003 0.74 1123 124 0.2982 0.3755 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2754 REMARK 3 ANGLE : 0.463 3725 REMARK 3 CHIRALITY : 0.035 415 REMARK 3 PLANARITY : 0.003 486 REMARK 3 DIHEDRAL : 13.020 1689 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OEN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7970 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.919 REMARK 200 RESOLUTION RANGE LOW (A) : 39.389 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.19400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.89800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BF5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM FORMATE AND 20% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 62.01850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 349 REMARK 465 PRO A 350 REMARK 465 GLY A 351 REMARK 465 SER A 352 REMARK 465 SER A 353 REMARK 465 HIS A 354 REMARK 465 LYS B 183 REMARK 465 THR B 184 REMARK 465 SER B 185 REMARK 465 SER B 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 160 O HOH B 401 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 259 -19.24 91.84 REMARK 500 ASP A 270 -103.60 62.57 REMARK 500 ASN A 278 -154.53 -130.40 REMARK 500 LYS A 312 117.65 -170.97 REMARK 500 PHE A 339 -16.90 -143.90 REMARK 500 LYS B 289 -48.01 73.82 REMARK 500 ARG B 314 69.23 -108.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 5OEN A 206 376 UNP Q61179 IRF9_MOUSE 206 376 DBREF 5OEN B 141 315 UNP Q3UDU1 Q3UDU1_MOUSE 141 315 SEQADV 5OEN ALA A 347 UNP Q61179 GLU 347 ENGINEERED MUTATION SEQADV 5OEN ALA A 348 UNP Q61179 GLU 348 ENGINEERED MUTATION SEQADV 5OEN ALA B 242 UNP Q3UDU1 GLN 242 ENGINEERED MUTATION SEQADV 5OEN ALA B 243 UNP Q3UDU1 LYS 243 ENGINEERED MUTATION SEQRES 1 A 171 LEU PRO LEU ASN SER ASP TYR SER LEU LEU LEU THR PHE SEQRES 2 A 171 ILE TYR GLY GLY ARG VAL VAL GLY LYS THR GLN VAL HIS SEQRES 3 A 171 SER LEU ASP CYS ARG LEU VAL ALA GLU ARG SER ASP SER SEQRES 4 A 171 GLU SER SER MET GLU GLN VAL GLU PHE PRO LYS PRO ASP SEQRES 5 A 171 PRO LEU GLU PRO THR GLN HIS LEU LEU ASN GLN LEU ASP SEQRES 6 A 171 ARG GLY VAL LEU VAL ALA SER ASN SER ARG GLY LEU PHE SEQRES 7 A 171 VAL GLN ARG LEU CYS PRO ILE PRO ILE SER TRP ASN ALA SEQRES 8 A 171 PRO GLU ALA PRO PRO GLY PRO GLY PRO HIS LEU LEU PRO SEQRES 9 A 171 SER ASN LYS CYS VAL GLU LEU PHE LYS THR THR TYR PHE SEQRES 10 A 171 CYS ARG ASP LEU ALA GLN TYR PHE GLN GLY GLN GLY PRO SEQRES 11 A 171 PRO PRO LYS PHE GLN ALA THR LEU HIS PHE TRP ALA ALA SEQRES 12 A 171 SER PRO GLY SER SER HIS SER GLN GLU ASN LEU ILE THR SEQRES 13 A 171 VAL GLN MET GLU GLN ALA PHE ALA ARG HIS LEU LEU GLU SEQRES 14 A 171 LYS ILE SEQRES 1 B 175 GLN LEU GLU ILE GLU ASN ARG ILE GLN GLY LEU HIS VAL SEQRES 2 B 175 ASP ILE GLU PHE LEU VAL ARG SER ILE ARG GLN LEU LYS SEQRES 3 B 175 ASP GLU GLN ASP VAL PHE SER PHE ARG TYR THR VAL PHE SEQRES 4 B 175 SER LEU LYS LYS THR SER SER SER ASP PRO HIS GLN SER SEQRES 5 B 175 GLN GLN ALA GLN LEU VAL GLN ALA THR ALA ASN LYS VAL SEQRES 6 B 175 ASP ARG MET ARG LYS GLU VAL LEU ASP ILE SER LYS GLY SEQRES 7 B 175 LEU VAL GLY ARG LEU THR THR LEU VAL ASP LEU LEU LEU SEQRES 8 B 175 PRO LYS LEU ASP GLU TRP LYS VAL GLN GLN ALA ALA SER SEQRES 9 B 175 CYS ILE GLY ALA PRO PRO PRO GLU LEU GLN LEU GLU GLN SEQRES 10 B 175 LEU GLU GLN TRP LEU THR ALA GLY ALA LYS PHE LEU PHE SEQRES 11 B 175 HIS LEU ARG GLN LEU LEU LYS GLN LEU LYS GLU MET SER SEQRES 12 B 175 HIS MET LEU ARG TYR LYS GLY ASP MET PHE GLY GLN GLY SEQRES 13 B 175 VAL ASP LEU GLN ASN ALA GLN VAL MET GLU LEU LEU GLN SEQRES 14 B 175 ARG LEU LEU GLN ARG SER FORMUL 3 HOH *19(H2 O) HELIX 1 AA1 PRO A 261 ASN A 267 1 7 HELIX 2 AA2 THR A 319 GLY A 332 1 14 HELIX 3 AA3 ALA A 367 GLU A 374 1 8 HELIX 4 AA4 LEU B 142 LEU B 181 1 40 HELIX 5 AA5 PRO B 189 CYS B 245 1 57 HELIX 6 AA6 GLN B 254 SER B 283 1 30 HELIX 7 AA7 HIS B 284 LEU B 286 5 3 HELIX 8 AA8 GLY B 290 ARG B 314 1 25 SHEET 1 AA1 5 VAL A 224 VAL A 230 0 SHEET 2 AA1 5 LEU A 214 TYR A 220 -1 N LEU A 216 O THR A 228 SHEET 3 AA1 5 GLU A 357 GLN A 366 -1 O THR A 361 N ILE A 219 SHEET 4 AA1 5 THR A 342 ALA A 347 -1 N LEU A 343 O VAL A 362 SHEET 5 AA1 5 ILE A 292 ASN A 295 -1 N SER A 293 O HIS A 344 SHEET 1 AA2 5 GLN A 250 GLU A 252 0 SHEET 2 AA2 5 ASP A 234 VAL A 238 1 N ARG A 236 O VAL A 251 SHEET 3 AA2 5 VAL A 273 ASN A 278 -1 O VAL A 273 N LEU A 237 SHEET 4 AA2 5 GLY A 281 ARG A 286 -1 O PHE A 283 N ALA A 276 SHEET 5 AA2 5 VAL A 314 LYS A 318 -1 O VAL A 314 N VAL A 284 CISPEP 1 GLU A 260 PRO A 261 0 -4.96 CRYST1 30.602 124.037 51.029 90.00 92.10 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032678 0.000000 0.001196 0.00000 SCALE2 0.000000 0.008062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019610 0.00000