HEADER LIGASE 10-JUL-17 5OET TITLE THE STRUCTURE OF A GLUTATHIONE SYNTHETASE LIKE-EFFECTOR (GSS30) FROM TITLE 2 GLOBODERA PALLIDA IN APOFORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE SYNTHETASE-LIKE EFFECTOR 30 (GPA-GSS30-APO); COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: GSH-S; COMPND 5 EC: 6.3.2.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLOBODERA PALLIDA; SOURCE 3 ORGANISM_COMMON: POTATO CYST NEMATODE; SOURCE 4 ORGANISM_TAXID: 36090; SOURCE 5 CELL: DORSAL GLAND CELL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SHUFFLE; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPINS3C KEYWDS PLANT-PARASITIC NEMATODE, EFFECTOR, GLUTATHIONE SYNTHETASE-LIKE, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.LILLEY,A.MAQBOOL,D.WU,H.B.YUSUP,L.M.JONES,P.R.J.BIRCH, AUTHOR 2 M.J.BANFIELD,P.E.URWIN,S.EVES-VAN DEN AKKER REVDAT 2 17-JAN-24 5OET 1 LINK REVDAT 1 25-APR-18 5OET 0 JRNL AUTH C.J.LILLEY,A.MAQBOOL,D.WU,H.B.YUSUP,L.M.JONES,P.R.J.BIRCH, JRNL AUTH 2 M.J.BANFIELD,P.E.URWIN,S.EVES-VAN DEN AKKER JRNL TITL EFFECTOR GENE BIRTH IN PLANT PARASITIC NEMATODES: JRNL TITL 2 NEOFUNCTIONALIZATION OF A HOUSEKEEPING GLUTATHIONE JRNL TITL 3 SYNTHETASE GENE. JRNL REF PLOS GENET. V. 14 07310 2018 JRNL REFN ESSN 1553-7404 JRNL PMID 29641602 JRNL DOI 10.1371/JOURNAL.PGEN.1007310 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 32399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1661 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2361 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.4830 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.5190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.78000 REMARK 3 B22 (A**2) : 4.67000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.90000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.721 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.321 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.947 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6833 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6427 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9199 ; 1.482 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14899 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 811 ; 6.932 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 317 ;40.976 ;23.754 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1234 ;17.791 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;18.581 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1019 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7376 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1408 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 34 525 A 34 525 26190 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 525 REMARK 3 ORIGIN FOR THE GROUP (A): 68.3096 81.5528 40.7749 REMARK 3 T TENSOR REMARK 3 T11: 0.0991 T22: 0.1027 REMARK 3 T33: 0.1305 T12: -0.0067 REMARK 3 T13: 0.0477 T23: -0.0683 REMARK 3 L TENSOR REMARK 3 L11: 1.8509 L22: 0.3088 REMARK 3 L33: 1.6382 L12: 0.1677 REMARK 3 L13: 0.6625 L23: -0.0772 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: -0.3239 S13: 0.0368 REMARK 3 S21: 0.1332 S22: 0.0127 S23: -0.0134 REMARK 3 S31: 0.0775 S32: 0.0448 S33: -0.1034 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 525 REMARK 3 ORIGIN FOR THE GROUP (A): 53.6271 82.2090 -2.3629 REMARK 3 T TENSOR REMARK 3 T11: 0.1017 T22: 0.1812 REMARK 3 T33: 0.1238 T12: 0.0153 REMARK 3 T13: 0.0420 T23: 0.0979 REMARK 3 L TENSOR REMARK 3 L11: 1.6517 L22: 0.2147 REMARK 3 L33: 1.5472 L12: -0.0411 REMARK 3 L13: 0.2014 L23: 0.1175 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: 0.4292 S13: 0.0534 REMARK 3 S21: -0.1144 S22: 0.0433 S23: 0.0339 REMARK 3 S31: -0.0054 S32: -0.0962 S33: -0.0995 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5OET COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32990 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.99700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5OEV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM FORMATE DI-HYDRATE AND REMARK 280 20 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.80950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 ILE B 4 REMARK 465 PHE B 5 REMARK 465 LEU B 6 REMARK 465 ILE B 7 REMARK 465 LEU B 8 REMARK 465 PHE B 9 REMARK 465 LEU B 10 REMARK 465 PHE B 11 REMARK 465 CYS B 12 REMARK 465 PHE B 13 REMARK 465 ILE B 14 REMARK 465 ASN B 15 REMARK 465 PHE B 16 REMARK 465 GLY B 17 REMARK 465 ASN B 18 REMARK 465 ALA B 19 REMARK 465 THR B 20 REMARK 465 PRO B 21 REMARK 465 THR B 22 REMARK 465 THR B 23 REMARK 465 HIS B 24 REMARK 465 ASN B 25 REMARK 465 GLN B 26 REMARK 465 ASP B 27 REMARK 465 LYS B 28 REMARK 465 THR B 29 REMARK 465 ASP B 30 REMARK 465 LYS B 31 REMARK 465 GLU B 32 REMARK 465 GLU B 33 REMARK 465 VAL B 69 REMARK 465 PRO B 70 REMARK 465 THR B 71 REMARK 465 CYS B 72 REMARK 465 PRO B 73 REMARK 465 GLU B 74 REMARK 465 CYS B 75 REMARK 465 GLY B 76 REMARK 465 LYS B 77 REMARK 465 LYS B 78 REMARK 465 THR B 79 REMARK 465 LYS B 80 REMARK 465 LYS B 81 REMARK 465 ARG B 130 REMARK 465 GLU B 131 REMARK 465 VAL B 132 REMARK 465 LEU B 133 REMARK 465 ASN B 134 REMARK 465 SER B 135 REMARK 465 GLU B 136 REMARK 465 LEU B 137 REMARK 465 ASP B 138 REMARK 465 ASN B 139 REMARK 465 LEU B 152 REMARK 465 SER B 153 REMARK 465 ASP B 154 REMARK 465 ALA B 215 REMARK 465 SER B 216 REMARK 465 GLU B 217 REMARK 465 GLY B 316 REMARK 465 GLY B 317 REMARK 465 ALA B 318 REMARK 465 VAL B 319 REMARK 465 THR B 320 REMARK 465 LYS B 321 REMARK 465 GLU B 322 REMARK 465 GLU B 323 REMARK 465 ASN B 366 REMARK 465 ASN B 367 REMARK 465 PRO B 368 REMARK 465 GLU B 369 REMARK 465 GLU B 370 REMARK 465 GLU B 371 REMARK 465 GLY B 388 REMARK 465 LYS B 389 REMARK 465 ASP B 390 REMARK 465 GLU B 391 REMARK 465 ASP B 392 REMARK 465 LEU B 393 REMARK 465 THR B 394 REMARK 465 GLU B 395 REMARK 465 ASP B 396 REMARK 465 ILE B 397 REMARK 465 ILE B 398 REMARK 465 LYS B 399 REMARK 465 LYS B 400 REMARK 465 CYS B 415 REMARK 465 SER B 416 REMARK 465 SER B 417 REMARK 465 ASN B 418 REMARK 465 ALA B 419 REMARK 465 ALA B 420 REMARK 465 ASN B 506 REMARK 465 VAL B 507 REMARK 465 ASP B 508 REMARK 465 GLU B 509 REMARK 465 GLY B 510 REMARK 465 GLY B 511 REMARK 465 VAL B 512 REMARK 465 TRP B 513 REMARK 465 LYS B 514 REMARK 465 GLY B 515 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 ILE A 4 REMARK 465 PHE A 5 REMARK 465 LEU A 6 REMARK 465 ILE A 7 REMARK 465 LEU A 8 REMARK 465 PHE A 9 REMARK 465 LEU A 10 REMARK 465 PHE A 11 REMARK 465 CYS A 12 REMARK 465 PHE A 13 REMARK 465 ILE A 14 REMARK 465 ASN A 15 REMARK 465 PHE A 16 REMARK 465 GLY A 17 REMARK 465 ASN A 18 REMARK 465 ALA A 19 REMARK 465 THR A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 THR A 23 REMARK 465 HIS A 24 REMARK 465 ASN A 25 REMARK 465 GLN A 26 REMARK 465 ASP A 27 REMARK 465 LYS A 28 REMARK 465 THR A 29 REMARK 465 ASP A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 GLU A 33 REMARK 465 VAL A 69 REMARK 465 PRO A 70 REMARK 465 THR A 71 REMARK 465 CYS A 72 REMARK 465 PRO A 73 REMARK 465 GLU A 74 REMARK 465 CYS A 75 REMARK 465 GLY A 76 REMARK 465 LYS A 77 REMARK 465 LYS A 78 REMARK 465 THR A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 ARG A 130 REMARK 465 GLU A 131 REMARK 465 VAL A 132 REMARK 465 LEU A 133 REMARK 465 ASN A 134 REMARK 465 SER A 135 REMARK 465 GLU A 136 REMARK 465 LEU A 137 REMARK 465 ASP A 138 REMARK 465 ASN A 139 REMARK 465 GLY A 140 REMARK 465 ILE A 141 REMARK 465 ASP A 149 REMARK 465 GLY A 150 REMARK 465 MET A 151 REMARK 465 LEU A 152 REMARK 465 SER A 153 REMARK 465 ASP A 154 REMARK 465 ALA A 215 REMARK 465 SER A 216 REMARK 465 GLU A 217 REMARK 465 GLY A 316 REMARK 465 GLY A 317 REMARK 465 ALA A 318 REMARK 465 VAL A 319 REMARK 465 THR A 320 REMARK 465 LYS A 321 REMARK 465 GLU A 322 REMARK 465 GLU A 323 REMARK 465 ASN A 366 REMARK 465 ASN A 367 REMARK 465 PRO A 368 REMARK 465 GLU A 369 REMARK 465 GLU A 370 REMARK 465 GLU A 371 REMARK 465 GLY A 388 REMARK 465 LYS A 389 REMARK 465 ASP A 390 REMARK 465 GLU A 391 REMARK 465 ASP A 392 REMARK 465 LEU A 393 REMARK 465 THR A 394 REMARK 465 GLU A 395 REMARK 465 ASP A 396 REMARK 465 ILE A 397 REMARK 465 ILE A 398 REMARK 465 LYS A 399 REMARK 465 LYS A 400 REMARK 465 ALA A 401 REMARK 465 THR A 402 REMARK 465 GLU A 403 REMARK 465 ASN A 404 REMARK 465 CYS A 415 REMARK 465 SER A 416 REMARK 465 SER A 417 REMARK 465 ASN A 418 REMARK 465 ALA A 419 REMARK 465 ALA A 420 REMARK 465 ASN A 506 REMARK 465 VAL A 507 REMARK 465 ASP A 508 REMARK 465 GLU A 509 REMARK 465 GLY A 510 REMARK 465 GLY A 511 REMARK 465 VAL A 512 REMARK 465 TRP A 513 REMARK 465 LYS A 514 REMARK 465 GLY A 515 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 61 29.96 -142.04 REMARK 500 ARG B 276 97.59 -26.46 REMARK 500 ASP B 304 4.85 54.97 REMARK 500 THR B 402 54.85 -96.97 REMARK 500 GLU B 403 -46.80 -165.49 REMARK 500 ASN B 425 -136.90 57.61 REMARK 500 ASN A 61 29.99 -142.79 REMARK 500 ASP A 176 -41.01 105.45 REMARK 500 ASP A 304 4.92 54.84 REMARK 500 ASN A 425 -135.20 56.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 426 OE1 REMARK 620 2 GLU B 426 OE2 49.1 REMARK 620 3 GLU A 426 OE1 53.9 102.7 REMARK 620 4 GLU A 426 OE2 53.5 102.4 0.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 601 DBREF 5OET B 1 525 PDB 5OET 5OET 1 525 DBREF 5OET A 1 525 PDB 5OET 5OET 1 525 SEQRES 1 B 525 MET ALA ASN ILE PHE LEU ILE LEU PHE LEU PHE CYS PHE SEQRES 2 B 525 ILE ASN PHE GLY ASN ALA THR PRO THR THR HIS ASN GLN SEQRES 3 B 525 ASP LYS THR ASP LYS GLU GLU GLN TYR CYS VAL PRO ASN SEQRES 4 B 525 ILE GLU GLN ASP PRO GLN ILE LEU LEU GLU GLN SER LEU SEQRES 5 B 525 ASP ALA LYS ASP TRP ALA LEU SER ASN GLY LEU VAL LYS SEQRES 6 B 525 PHE VAL ASP VAL PRO THR CYS PRO GLU CYS GLY LYS LYS SEQRES 7 B 525 THR LYS LYS MET MET THR GLN PHE LEU PRO LEU SER LEU SEQRES 8 B 525 TYR PRO SER PRO PHE PRO ARG LYS LEU PHE GLN GLN ALA SEQRES 9 B 525 VAL ASP VAL GLN LYS ALA MET LEU LEU LEU TYR PHE ARG SEQRES 10 B 525 ALA SER CYS ASP TYR GLU PHE LEU LYS GLU ALA HIS ARG SEQRES 11 B 525 GLU VAL LEU ASN SER GLU LEU ASP ASN GLY ILE LYS LYS SEQRES 12 B 525 LEU VAL LYS ARG LEU ASP GLY MET LEU SER ASP GLY ILE SEQRES 13 B 525 ARG GLN PRO VAL ALA MET PHE CYS GLN ARG ALA ASP TYR SEQRES 14 B 525 MET ALA SER GLN GLU ASP ASP GLY GLN TYR VAL LEU LYS SEQRES 15 B 525 GLN VAL GLU VAL ASN THR GLY ALA ILE GLY SER PHE GLY SEQRES 16 B 525 THR THR PRO ARG PHE SER ARG LEU HIS ARG ARG MET VAL SEQRES 17 B 525 SER ASN ALA GLY ILE ASP ALA SER GLU SER VAL MET PRO SEQRES 18 B 525 SER ASP GLN THR ASP THR MET ALA ALA GLU THR LEU TYR SEQRES 19 B 525 GLN ALA TRP LEU GLU PHE GLY ASN ALA GLU ALA VAL ILE SEQRES 20 B 525 LEU PHE LEU HIS GLY SER PRO ASN SER HIS LEU MET LEU SEQRES 21 B 525 GLU SER ARG GLN ILE THR HIS GLN LEU GLU SER ILE SER SEQRES 22 B 525 THR GLU ARG ILE LYS CYS ARG PHE ILE THR ILE THR GLU SEQRES 23 B 525 GLY LEU ASN ARG LEU LYS ARG ASP PRO ASN ASN PHE SER SEQRES 24 B 525 LEU ILE LEU ASP ASP LYS PHE VAL VAL ALA VAL VAL PHE SEQRES 25 B 525 ASP ARG LEU GLY GLY ALA VAL THR LYS GLU GLU MET ASP SEQRES 26 B 525 LEU ASN PHE VAL ILE ASP HIS SER THR ALA ILE LYS THR SEQRES 27 B 525 PRO PRO TYR ILE PHE ALA LEU SER HIS THR LYS ARG MET SEQRES 28 B 525 GLN GLN VAL PHE THR LYS PRO GLY MET VAL GLU LYS PHE SEQRES 29 B 525 PHE ASN ASN PRO GLU GLU GLU HIS MET ALA GLU ALA ILE SEQRES 30 B 525 ARG LYS VAL GLN THR LYS GLY TRP ALA ILE GLY LYS ASP SEQRES 31 B 525 GLU ASP LEU THR GLU ASP ILE ILE LYS LYS ALA THR GLU SEQRES 32 B 525 ASN PRO HIS ARG TYR VAL LEU LYS ASN ASN GLY CYS SER SEQRES 33 B 525 SER ASN ALA ALA ASP MET PHE PHE ASN GLU ASP ILE LEU SEQRES 34 B 525 LYS LYS LEU LYS THR MET ALA PRO ALA ASP ARG ASP PHE SEQRES 35 B 525 TYR TYR LEU THR GLU LYS LEU ARG PRO MET VAL ILE LYS SEQRES 36 B 525 ASN HIS PHE VAL ARG PRO ASN MET ALA PRO THR LEU ASN SEQRES 37 B 525 LEU ASP ALA THR PRO GLU LEU GLY ILE PHE GLY CYS LEU SEQRES 38 B 525 LEU GLY ASN MET GLU THR GLY LYS VAL SER TYR PHE SER SEQRES 39 B 525 ARG THR GLY HIS MET MET LYS SER LYS LEU ALA ASN VAL SEQRES 40 B 525 ASP GLU GLY GLY VAL TRP LYS GLY PHE SER VAL TYR ASP SEQRES 41 B 525 SER PRO TYR LEU VAL SEQRES 1 A 525 MET ALA ASN ILE PHE LEU ILE LEU PHE LEU PHE CYS PHE SEQRES 2 A 525 ILE ASN PHE GLY ASN ALA THR PRO THR THR HIS ASN GLN SEQRES 3 A 525 ASP LYS THR ASP LYS GLU GLU GLN TYR CYS VAL PRO ASN SEQRES 4 A 525 ILE GLU GLN ASP PRO GLN ILE LEU LEU GLU GLN SER LEU SEQRES 5 A 525 ASP ALA LYS ASP TRP ALA LEU SER ASN GLY LEU VAL LYS SEQRES 6 A 525 PHE VAL ASP VAL PRO THR CYS PRO GLU CYS GLY LYS LYS SEQRES 7 A 525 THR LYS LYS MET MET THR GLN PHE LEU PRO LEU SER LEU SEQRES 8 A 525 TYR PRO SER PRO PHE PRO ARG LYS LEU PHE GLN GLN ALA SEQRES 9 A 525 VAL ASP VAL GLN LYS ALA MET LEU LEU LEU TYR PHE ARG SEQRES 10 A 525 ALA SER CYS ASP TYR GLU PHE LEU LYS GLU ALA HIS ARG SEQRES 11 A 525 GLU VAL LEU ASN SER GLU LEU ASP ASN GLY ILE LYS LYS SEQRES 12 A 525 LEU VAL LYS ARG LEU ASP GLY MET LEU SER ASP GLY ILE SEQRES 13 A 525 ARG GLN PRO VAL ALA MET PHE CYS GLN ARG ALA ASP TYR SEQRES 14 A 525 MET ALA SER GLN GLU ASP ASP GLY GLN TYR VAL LEU LYS SEQRES 15 A 525 GLN VAL GLU VAL ASN THR GLY ALA ILE GLY SER PHE GLY SEQRES 16 A 525 THR THR PRO ARG PHE SER ARG LEU HIS ARG ARG MET VAL SEQRES 17 A 525 SER ASN ALA GLY ILE ASP ALA SER GLU SER VAL MET PRO SEQRES 18 A 525 SER ASP GLN THR ASP THR MET ALA ALA GLU THR LEU TYR SEQRES 19 A 525 GLN ALA TRP LEU GLU PHE GLY ASN ALA GLU ALA VAL ILE SEQRES 20 A 525 LEU PHE LEU HIS GLY SER PRO ASN SER HIS LEU MET LEU SEQRES 21 A 525 GLU SER ARG GLN ILE THR HIS GLN LEU GLU SER ILE SER SEQRES 22 A 525 THR GLU ARG ILE LYS CYS ARG PHE ILE THR ILE THR GLU SEQRES 23 A 525 GLY LEU ASN ARG LEU LYS ARG ASP PRO ASN ASN PHE SER SEQRES 24 A 525 LEU ILE LEU ASP ASP LYS PHE VAL VAL ALA VAL VAL PHE SEQRES 25 A 525 ASP ARG LEU GLY GLY ALA VAL THR LYS GLU GLU MET ASP SEQRES 26 A 525 LEU ASN PHE VAL ILE ASP HIS SER THR ALA ILE LYS THR SEQRES 27 A 525 PRO PRO TYR ILE PHE ALA LEU SER HIS THR LYS ARG MET SEQRES 28 A 525 GLN GLN VAL PHE THR LYS PRO GLY MET VAL GLU LYS PHE SEQRES 29 A 525 PHE ASN ASN PRO GLU GLU GLU HIS MET ALA GLU ALA ILE SEQRES 30 A 525 ARG LYS VAL GLN THR LYS GLY TRP ALA ILE GLY LYS ASP SEQRES 31 A 525 GLU ASP LEU THR GLU ASP ILE ILE LYS LYS ALA THR GLU SEQRES 32 A 525 ASN PRO HIS ARG TYR VAL LEU LYS ASN ASN GLY CYS SER SEQRES 33 A 525 SER ASN ALA ALA ASP MET PHE PHE ASN GLU ASP ILE LEU SEQRES 34 A 525 LYS LYS LEU LYS THR MET ALA PRO ALA ASP ARG ASP PHE SEQRES 35 A 525 TYR TYR LEU THR GLU LYS LEU ARG PRO MET VAL ILE LYS SEQRES 36 A 525 ASN HIS PHE VAL ARG PRO ASN MET ALA PRO THR LEU ASN SEQRES 37 A 525 LEU ASP ALA THR PRO GLU LEU GLY ILE PHE GLY CYS LEU SEQRES 38 A 525 LEU GLY ASN MET GLU THR GLY LYS VAL SER TYR PHE SER SEQRES 39 A 525 ARG THR GLY HIS MET MET LYS SER LYS LEU ALA ASN VAL SEQRES 40 A 525 ASP GLU GLY GLY VAL TRP LYS GLY PHE SER VAL TYR ASP SEQRES 41 A 525 SER PRO TYR LEU VAL HET MG B 601 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *11(H2 O) HELIX 1 AA1 ASP B 43 SER B 60 1 18 HELIX 2 AA2 ARG B 98 CYS B 120 1 23 HELIX 3 AA3 ASP B 121 ALA B 128 1 8 HELIX 4 AA4 ILE B 141 MET B 151 1 11 HELIX 5 AA5 GLY B 195 ALA B 211 1 17 HELIX 6 AA6 GLN B 224 GLY B 241 1 18 HELIX 7 AA7 LEU B 258 SER B 271 1 14 HELIX 8 AA8 GLU B 286 ARG B 290 1 5 HELIX 9 AA9 ASP B 325 HIS B 332 1 8 HELIX 10 AB1 TYR B 341 SER B 346 1 6 HELIX 11 AB2 THR B 348 PHE B 355 1 8 HELIX 12 AB3 VAL B 361 PHE B 365 5 5 HELIX 13 AB4 MET B 373 GLN B 381 1 9 HELIX 14 AB5 ASN B 404 HIS B 406 5 3 HELIX 15 AB6 GLU B 426 MET B 435 1 10 HELIX 16 AB7 ALA B 436 ASP B 441 1 6 HELIX 17 AB8 ASP A 43 SER A 60 1 18 HELIX 18 AB9 ARG A 98 CYS A 120 1 23 HELIX 19 AC1 ASP A 121 ALA A 128 1 8 HELIX 20 AC2 LYS A 143 LEU A 148 1 6 HELIX 21 AC3 GLY A 195 ALA A 211 1 17 HELIX 22 AC4 GLN A 224 GLY A 241 1 18 HELIX 23 AC5 LEU A 258 ILE A 272 1 15 HELIX 24 AC6 GLU A 286 ARG A 290 1 5 HELIX 25 AC7 ASP A 325 HIS A 332 1 8 HELIX 26 AC8 TYR A 341 SER A 346 1 6 HELIX 27 AC9 THR A 348 PHE A 355 1 8 HELIX 28 AD1 VAL A 361 PHE A 365 5 5 HELIX 29 AD2 MET A 373 GLN A 381 1 9 HELIX 30 AD3 GLU A 426 MET A 435 1 10 HELIX 31 AD4 ALA A 436 ASP A 441 1 6 SHEET 1 A 2 VAL B 64 VAL B 67 0 SHEET 2 A 2 MET B 83 PHE B 86 -1 SHEET 1 B 2 SER B 94 PRO B 97 0 SHEET 2 B 2 PRO B 522 VAL B 525 1 SHEET 1 C 5 SER B 517 ASP B 520 0 SHEET 2 C 5 GLY B 497 LEU B 504 -1 SHEET 3 C 5 ALA B 471 ASN B 484 -1 SHEET 4 C 5 VAL B 160 GLN B 173 -1 SHEET 5 C 5 TYR B 179 THR B 188 -1 SHEET 1 D 3 CYS B 279 THR B 283 0 SHEET 2 D 3 VAL B 246 HIS B 251 1 SHEET 3 D 3 VAL B 308 ARG B 314 1 SHEET 1 E 2 LEU B 291 ARG B 293 0 SHEET 2 E 2 LEU B 300 LEU B 302 -1 SHEET 1 F 4 GLY B 384 ALA B 386 0 SHEET 2 F 4 TYR B 443 GLU B 447 -1 SHEET 3 F 4 TYR B 408 ASN B 412 -1 SHEET 4 F 4 MET B 422 PHE B 424 -1 SHEET 1 G 2 ILE B 454 ASN B 456 0 SHEET 2 G 2 LEU B 469 ALA B 471 -1 SHEET 1 H 2 LEU B 481 ASN B 484 0 SHEET 2 H 2 LYS B 489 PHE B 493 -1 SHEET 1 I 2 VAL A 64 VAL A 67 0 SHEET 2 I 2 MET A 83 PHE A 86 -1 SHEET 1 J 2 SER A 94 PRO A 97 0 SHEET 2 J 2 PRO A 522 VAL A 525 1 SHEET 1 K 5 SER A 517 ASP A 520 0 SHEET 2 K 5 GLY A 497 LEU A 504 -1 SHEET 3 K 5 ALA A 471 ASN A 484 -1 SHEET 4 K 5 VAL A 160 GLN A 173 -1 SHEET 5 K 5 TYR A 179 THR A 188 -1 SHEET 1 L 3 CYS A 279 THR A 283 0 SHEET 2 L 3 VAL A 246 HIS A 251 1 SHEET 3 L 3 VAL A 308 ARG A 314 1 SHEET 1 M 2 LEU A 291 ARG A 293 0 SHEET 2 M 2 LEU A 300 LEU A 302 -1 SHEET 1 N 4 GLY A 384 ALA A 386 0 SHEET 2 N 4 TYR A 443 GLU A 447 -1 SHEET 3 N 4 TYR A 408 ASN A 412 -1 SHEET 4 N 4 MET A 422 PHE A 424 -1 SHEET 1 O 2 ILE A 454 ASN A 456 0 SHEET 2 O 2 LEU A 469 ALA A 471 -1 SHEET 1 P 2 LEU A 481 ASN A 484 0 SHEET 2 P 2 LYS A 489 PHE A 493 -1 SSBOND 1 CYS B 164 CYS B 480 1555 1555 2.08 SSBOND 2 CYS A 164 CYS A 480 1555 1555 2.07 LINK OE1 GLU B 426 MG MG B 601 1555 1555 2.90 LINK OE2 GLU B 426 MG MG B 601 1555 1555 1.91 LINK MG MG B 601 OE1 GLU A 426 1554 1555 1.97 LINK MG MG B 601 OE2 GLU A 426 1554 1555 2.75 CISPEP 1 THR B 338 PRO B 339 0 -1.12 CISPEP 2 THR A 338 PRO A 339 0 -1.43 SITE 1 AC1 4 HIS A 406 GLU A 426 HIS B 406 GLU B 426 CRYST1 72.750 81.619 93.840 90.00 103.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013746 0.000000 0.003219 0.00000 SCALE2 0.000000 0.012252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010945 0.00000