HEADER METAL BINDING PROTEIN 11-JUL-17 5OFS TITLE X-RAY STRUCTURE OF A ZINC BINDING GB1 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN G; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: IGG-BINDING PROTEIN G; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP. GROUP G; SOURCE 3 ORGANISM_TAXID: 1320; SOURCE 4 GENE: SPG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNOGLOBULIN BINDI, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.ROTHLISBERGER,E.BOZKURT,R.HOVIUS,M.A.S.PEREZ,N.J.BROWNING REVDAT 3 17-JAN-24 5OFS 1 COMPND HETNAM LINK REVDAT 2 11-APR-18 5OFS 1 COMPND JRNL HETNAM REVDAT 1 04-APR-18 5OFS 0 JRNL AUTH E.BOZKURT,M.A.S.PEREZ,R.HOVIUS,N.J.BROWNING,U.ROTHLISBERGER JRNL TITL GENETIC ALGORITHM BASED DESIGN AND EXPERIMENTAL JRNL TITL 2 CHARACTERIZATION OF A HIGHLY THERMOSTABLE METALLOPROTEIN. JRNL REF J. AM. CHEM. SOC. V. 140 4517 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 29336153 JRNL DOI 10.1021/JACS.7B10660 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 106704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5615 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5372 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 283 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.13000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.023 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.921 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1994 ; 0.034 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1833 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2720 ; 1.389 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4272 ; 0.702 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 6.527 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;41.094 ;26.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;12.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2214 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 390 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 931 ; 2.003 ; 1.348 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 927 ; 1.933 ; 1.339 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1162 ; 2.552 ; 2.029 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1163 ; 2.551 ; 2.028 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1063 ; 3.033 ; 1.744 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1063 ; 3.031 ; 1.744 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1541 ; 3.394 ; 2.495 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2340 ; 4.053 ;18.585 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2341 ; 4.053 ;18.597 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3827 ; 6.610 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 125 ;30.902 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3884 ;15.671 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 61 B 6 61 3654 0.12 0.05 REMARK 3 2 A 6 61 C 6 61 3516 0.15 0.05 REMARK 3 3 A 6 61 D 6 61 3546 0.16 0.05 REMARK 3 4 B 6 61 C 6 61 3430 0.14 0.05 REMARK 3 5 B 6 61 D 6 61 3412 0.15 0.05 REMARK 3 6 C 6 61 D 6 61 3572 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADDREF REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 739647 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.470 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.28 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1IGD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70% MPD, 100 MM ZNSO4, 100 MM NACI, PH REMARK 280 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.22600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.81050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.22600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.81050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 223 O HOH D 254 1.37 REMARK 500 O HOH A 227 O HOH A 237 1.40 REMARK 500 O HOH D 240 O HOH D 252 1.66 REMARK 500 ND2 ASN D 42 O HOH D 201 1.68 REMARK 500 O HOH C 239 O HOH C 246 1.74 REMARK 500 O HOH C 234 O HOH C 248 1.75 REMARK 500 O HOH C 205 O HOH C 246 1.76 REMARK 500 O HOH D 267 O HOH D 268 1.78 REMARK 500 O HOH D 269 O HOH D 270 1.79 REMARK 500 O HOH A 226 O HOH A 233 1.81 REMARK 500 O HOH D 263 O HOH D 265 1.82 REMARK 500 O HOH D 268 O HOH D 269 1.83 REMARK 500 CB GLN B 7 O HOH B 202 1.87 REMARK 500 O1 EDO C 103 O HOH C 201 1.87 REMARK 500 O GLY C 14 NZ LYS C 18 1.91 REMARK 500 O HOH D 252 O HOH D 265 1.93 REMARK 500 CB GLU A 30 O HOH A 236 1.95 REMARK 500 O HOH D 207 O HOH D 246 1.96 REMARK 500 O2 EDO C 103 O HOH C 202 1.97 REMARK 500 O HOH C 242 O HOH C 246 1.99 REMARK 500 O HOH C 205 O HOH C 242 2.00 REMARK 500 O HOH A 241 O HOH A 248 2.00 REMARK 500 C1 EDO C 103 O HOH C 201 2.00 REMARK 500 O HOH C 226 O HOH C 244 2.03 REMARK 500 O HOH C 239 O HOH C 242 2.04 REMARK 500 O HOH A 236 O HOH A 243 2.05 REMARK 500 OD1 ASN C 42 O HOH C 203 2.09 REMARK 500 CD GLU D 61 O HOH D 203 2.10 REMARK 500 O HOH B 241 O HOH C 209 2.11 REMARK 500 O HOH D 267 O HOH D 269 2.15 REMARK 500 OD2 ASP D 45 O HOH D 202 2.15 REMARK 500 O HOH C 233 O HOH C 238 2.17 REMARK 500 C2 EDO C 103 O HOH C 202 2.18 REMARK 500 O HOH A 215 O HOH A 234 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU D 32 O HOH A 237 3444 1.72 REMARK 500 CB ASN B 42 O HOH C 203 4455 1.96 REMARK 500 O HOH B 237 O HOH D 239 3455 2.03 REMARK 500 O HOH A 239 O HOH D 207 3454 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 30 CG GLU A 30 CD 0.093 REMARK 500 GLU A 30 CD GLU A 30 OE1 0.066 REMARK 500 ASN A 42 N ASN A 42 CA 0.130 REMARK 500 ASN A 42 CA ASN A 42 CB 0.217 REMARK 500 GLU B 47 CB GLU B 47 CG -0.192 REMARK 500 THR C 16 N THR C 16 CA 0.126 REMARK 500 THR C 22 CB THR C 22 CG2 -0.202 REMARK 500 GLU C 24 CB GLU C 24 CG -0.138 REMARK 500 GLU C 24 CD GLU C 24 OE1 0.158 REMARK 500 GLU C 24 CD GLU C 24 OE2 -0.145 REMARK 500 GLU C 30 CG GLU C 30 CD 0.215 REMARK 500 GLU C 30 CD GLU C 30 OE1 0.207 REMARK 500 LYS C 33 CE LYS C 33 NZ -0.176 REMARK 500 LYS D 18 CG LYS D 18 CD -0.235 REMARK 500 LYS D 18 CD LYS D 18 CE 0.180 REMARK 500 GLU D 24 CD GLU D 24 OE1 0.067 REMARK 500 GLU D 32 CD GLU D 32 OE2 -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 79.07 -111.44 REMARK 500 ASN C 13 76.04 -117.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 270 DISTANCE = 5.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 27 OD1 REMARK 620 2 GLU B 47 OE1 96.0 REMARK 620 3 GLU C 47 OE1 97.9 93.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 28 NE2 REMARK 620 2 GLU A 52 OE2 120.0 REMARK 620 3 HIS A 55 NE2 107.0 109.0 REMARK 620 4 GLU B 61 OXT 105.1 111.7 102.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 47 OE1 REMARK 620 2 ASP B 27 OD1 56.1 REMARK 620 3 GLU D 47 OE1 23.5 60.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 61 OXT REMARK 620 2 HIS C 28 NE2 29.8 REMARK 620 3 GLU C 52 OE2 26.5 3.6 REMARK 620 4 HIS C 55 NE2 27.2 3.5 3.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 28 NE2 REMARK 620 2 GLU B 52 OE2 120.5 REMARK 620 3 HIS B 55 NE2 108.8 109.2 REMARK 620 4 GLU D 61 OXT 44.7 90.3 92.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 61 OXT REMARK 620 2 HIS D 28 NE2 125.1 REMARK 620 3 GLU D 52 OE2 124.3 3.9 REMARK 620 4 HIS D 55 NE2 126.7 3.6 2.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT D 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5O94 RELATED DB: PDB DBREF 5OFS A 6 61 PDB 5OFS 5OFS 6 61 DBREF 5OFS B 6 61 PDB 5OFS 5OFS 6 61 DBREF 5OFS C 6 61 PDB 5OFS 5OFS 6 61 DBREF 5OFS D 6 61 PDB 5OFS 5OFS 6 61 SEQRES 1 A 56 MET GLN PHE LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 A 56 GLY VAL ILE THR ILE GLU ALA VAL ASP HIS ALA GLU ALA SEQRES 3 A 56 GLU LYS PHE PHE LYS GLN TYR ALA ASN ASP ASN GLY VAL SEQRES 4 A 56 ASP GLY GLU TRP THR TYR ASP GLU ALA THR HIS THR PHE SEQRES 5 A 56 THR VAL THR GLU SEQRES 1 B 56 MET GLN PHE LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 B 56 GLY VAL ILE THR ILE GLU ALA VAL ASP HIS ALA GLU ALA SEQRES 3 B 56 GLU LYS PHE PHE LYS GLN TYR ALA ASN ASP ASN GLY VAL SEQRES 4 B 56 ASP GLY GLU TRP THR TYR ASP GLU ALA THR HIS THR PHE SEQRES 5 B 56 THR VAL THR GLU SEQRES 1 C 56 MET GLN PHE LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 C 56 GLY VAL ILE THR ILE GLU ALA VAL ASP HIS ALA GLU ALA SEQRES 3 C 56 GLU LYS PHE PHE LYS GLN TYR ALA ASN ASP ASN GLY VAL SEQRES 4 C 56 ASP GLY GLU TRP THR TYR ASP GLU ALA THR HIS THR PHE SEQRES 5 C 56 THR VAL THR GLU SEQRES 1 D 56 MET GLN PHE LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 D 56 GLY VAL ILE THR ILE GLU ALA VAL ASP HIS ALA GLU ALA SEQRES 3 D 56 GLU LYS PHE PHE LYS GLN TYR ALA ASN ASP ASN GLY VAL SEQRES 4 D 56 ASP GLY GLU TRP THR TYR ASP GLU ALA THR HIS THR PHE SEQRES 5 D 56 THR VAL THR GLU HET ZN A 101 1 HET ZN A 102 1 HET ACT A 103 4 HET ACT A 104 4 HET EDO A 105 4 HET ZN B 101 1 HET MPD B 102 16 HET ZN C 101 1 HET MPD C 102 8 HET EDO C 103 4 HET ZN D 101 1 HET ZN D 102 1 HET MRD D 103 8 HET CL D 104 1 HET CL D 105 1 HET SO4 D 106 5 HET ACT D 107 4 HET EDO D 108 4 HET EDO D 109 4 HET EDO D 110 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 ZN 6(ZN 2+) FORMUL 7 ACT 3(C2 H3 O2 1-) FORMUL 9 EDO 5(C2 H6 O2) FORMUL 11 MPD 2(C6 H14 O2) FORMUL 17 MRD C6 H14 O2 FORMUL 18 CL 2(CL 1-) FORMUL 20 SO4 O4 S 2- FORMUL 25 HOH *215(H2 O) HELIX 1 AA1 ASP A 27 ASN A 42 1 16 HELIX 2 AA2 GLU A 52 THR A 54 5 3 HELIX 3 AA3 ASP B 27 GLY B 43 1 17 HELIX 4 AA4 GLU B 52 THR B 54 5 3 HELIX 5 AA5 ASP C 27 ASN C 42 1 16 HELIX 6 AA6 ASP D 27 ASN D 42 1 16 SHEET 1 AA1 8 GLU A 47 ASP A 51 0 SHEET 2 AA1 8 THR A 56 THR A 60 -1 O THR A 60 N GLU A 47 SHEET 3 AA1 8 GLN A 7 ASN A 13 1 N LYS A 9 O PHE A 57 SHEET 4 AA1 8 LYS A 18 GLU A 24 -1 O ILE A 21 N LEU A 10 SHEET 5 AA1 8 LEU D 17 GLU D 24 -1 O LYS D 18 N THR A 22 SHEET 6 AA1 8 GLN D 7 ASN D 13 -1 N LEU D 12 O GLY D 19 SHEET 7 AA1 8 THR D 56 THR D 60 1 O VAL D 59 N ASN D 13 SHEET 8 AA1 8 GLU D 47 ASP D 51 -1 N GLU D 47 O THR D 60 SHEET 1 AA2 4 LYS B 18 GLU B 24 0 SHEET 2 AA2 4 GLN B 7 ASN B 13 -1 N LEU B 12 O GLY B 19 SHEET 3 AA2 4 THR B 56 THR B 60 1 O PHE B 57 N LYS B 9 SHEET 4 AA2 4 GLU B 47 ASP B 51 -1 N ASP B 51 O THR B 56 SHEET 1 AA3 4 LYS C 18 GLU C 24 0 SHEET 2 AA3 4 GLN C 7 ASN C 13 -1 N LEU C 10 O ILE C 21 SHEET 3 AA3 4 THR C 56 THR C 60 1 O PHE C 57 N LYS C 9 SHEET 4 AA3 4 GLU C 47 ASP C 51 -1 N GLU C 47 O THR C 60 LINK OD1 ASP A 27 ZN ZN A 102 1555 1555 1.97 LINK NE2 HIS A 28 ZN ZN A 101 1555 1555 2.01 LINK OE1 GLU A 47 ZN ZN D 102 1555 3454 1.95 LINK OE2 GLU A 52 ZN ZN A 101 1555 1555 1.98 LINK NE2 HIS A 55 ZN ZN A 101 1555 1555 2.03 LINK OXT GLU A 61 ZN ZN C 101 1555 1554 1.95 LINK ZN ZN A 101 OXT GLU B 61 1555 1555 1.87 LINK ZN ZN A 102 OE1 GLU B 47 1555 1555 2.00 LINK ZN ZN A 102 OE1 GLU C 47 1555 1555 1.90 LINK OD1 ASP B 27 ZN ZN D 102 1555 3455 1.94 LINK NE2 HIS B 28 ZN ZN B 101 1555 1555 1.99 LINK OE2 GLU B 52 ZN ZN B 101 1555 1555 1.98 LINK NE2 HIS B 55 ZN ZN B 101 1555 1555 2.05 LINK ZN ZN B 101 OXT GLU D 61 3445 1555 1.92 LINK NE2 HIS C 28 ZN ZN C 101 1555 1555 2.02 LINK OE2 GLU C 52 ZN ZN C 101 1555 1555 1.96 LINK NE2 HIS C 55 ZN ZN C 101 1555 1555 2.04 LINK OXT GLU C 61 ZN ZN D 101 1555 3454 1.93 LINK NE2 HIS D 28 ZN ZN D 101 1555 1555 2.01 LINK OE1 GLU D 47 ZN ZN D 102 1555 1555 1.99 LINK OE2 GLU D 52 ZN ZN D 101 1555 1555 1.96 LINK NE2 HIS D 55 ZN ZN D 101 1555 1555 2.04 SITE 1 AC1 4 HIS A 28 GLU A 52 HIS A 55 GLU B 61 SITE 1 AC2 4 ASP A 27 GLU B 47 GLU C 47 CL D 105 SITE 1 AC3 5 ASN A 13 THR A 58 THR A 60 HOH A 206 SITE 2 AC3 5 HOH A 219 SITE 1 AC4 3 THR A 22 THR D 16 LYS D 18 SITE 1 AC5 1 GLU A 24 SITE 1 AC6 4 HIS B 28 GLU B 52 HIS B 55 GLU D 61 SITE 1 AC7 8 LYS B 36 TRP B 48 THR B 49 TYR B 50 SITE 2 AC7 8 HOH B 205 LYS C 36 TRP C 48 PHE C 57 SITE 1 AC8 4 GLU A 61 HIS C 28 GLU C 52 HIS C 55 SITE 1 AC9 5 HIS B 28 TYR B 50 HIS C 28 ALA C 29 SITE 2 AC9 5 HOH C 214 SITE 1 AD1 4 GLU B 30 THR C 16 HOH C 201 HOH C 202 SITE 1 AD2 4 GLU C 61 HIS D 28 GLU D 52 HIS D 55 SITE 1 AD3 4 GLU A 47 ASP B 27 GLU D 47 CL D 104 SITE 1 AD4 5 THR A 16 HOH A 213 GLU D 24 PHE D 34 SITE 2 AD4 5 HOH D 220 SITE 1 AD5 7 GLU A 47 ASP B 27 ALA B 29 HIS C 28 SITE 2 AD5 7 ALA C 29 GLU D 47 ZN D 102 SITE 1 AD6 6 ASP A 27 ALA A 29 ZN A 102 GLU B 47 SITE 2 AD6 6 GLU C 47 HIS D 28 SITE 1 AD7 8 ASN B 13 LYS B 18 THR B 60 GLU B 61 SITE 2 AD7 8 HOH B 201 GLU D 30 LYS D 33 HOH D 211 SITE 1 AD8 1 THR D 22 SITE 1 AD9 4 HIS B 55 LYS D 15 GLU D 61 HOH D 203 SITE 1 AE1 1 TYR D 50 CRYST1 74.452 75.621 51.153 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013431 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019549 0.00000