HEADER HYDROLASE 17-JUL-17 5OHK TITLE CRYSTAL STRUCTURE OF USP30 IN COVALENT COMPLEX WITH UBIQUITIN TITLE 2 PROPARGYLAMIDE (HIGH RESOLUTION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 30,UBIQUITIN COMPND 3 CARBOXYL-TERMINAL HYDROLASE 30,UBIQUITIN CARBOXYL-TERMINAL HYDROLASE COMPND 4 30; COMPND 5 CHAIN: A; COMPND 6 FRAGMENT: UNP RESIDUES 64-178,UNP RESIDUES 217-357,UNP RESIDUES 432- COMPND 7 502; COMPND 8 SYNONYM: DEUBIQUITINATING ENZYME 30,UBIQUITIN THIOESTERASE 30, COMPND 9 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 30,UB-SPECIFIC PROTEASE 30, COMPND 10 DEUBIQUITINATING ENZYME 30,UBIQUITIN THIOESTERASE 30,UBIQUITIN- COMPND 11 SPECIFIC-PROCESSING PROTEASE 30,UB-SPECIFIC PROTEASE 30, COMPND 12 DEUBIQUITINATING ENZYME 30,UBIQUITIN THIOESTERASE 30,UBIQUITIN- COMPND 13 SPECIFIC-PROCESSING PROTEASE 30,UB-SPECIFIC PROTEASE 30; COMPND 14 EC: 3.4.19.12,3.4.19.12,3.4.19.12; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES; COMPND 17 MOL_ID: 2; COMPND 18 MOLECULE: POLYUBIQUITIN-B; COMPND 19 CHAIN: B; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3), ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008, 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) PLACI; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 PLACI; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: POPIN-3C-K; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MG-26-82; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: UBB; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) PLACI; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PTXB1 KEYWDS DEUBIQUITINASE, DUB, UBIQUITIN, USP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GERSCH,D.KOMANDER REVDAT 4 07-FEB-24 5OHK 1 LINK REVDAT 3 15-NOV-17 5OHK 1 JRNL REVDAT 2 04-OCT-17 5OHK 1 JRNL REVDAT 1 20-SEP-17 5OHK 0 JRNL AUTH M.GERSCH,C.GLADKOVA,A.F.SCHUBERT,M.A.MICHEL,S.MASLEN, JRNL AUTH 2 D.KOMANDER JRNL TITL MECHANISM AND REGULATION OF THE LYS6-SELECTIVE JRNL TITL 2 DEUBIQUITINASE USP30. JRNL REF NAT. STRUCT. MOL. BIOL. V. 24 920 2017 JRNL REFN ESSN 1545-9985 JRNL PMID 28945249 JRNL DOI 10.1038/NSMB.3475 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 20054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.3520 - 4.4761 1.00 2889 166 0.2228 0.2592 REMARK 3 2 4.4761 - 3.5529 0.99 2776 122 0.2003 0.2328 REMARK 3 3 3.5529 - 3.1038 0.99 2709 143 0.2318 0.2535 REMARK 3 4 3.1038 - 2.8200 0.99 2683 130 0.2456 0.2451 REMARK 3 5 2.8200 - 2.6178 0.99 2667 154 0.2544 0.2947 REMARK 3 6 2.6178 - 2.4635 0.99 2672 154 0.2590 0.3197 REMARK 3 7 2.4635 - 2.3401 0.99 2679 110 0.2650 0.2833 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3004 REMARK 3 ANGLE : 0.525 4085 REMARK 3 CHIRALITY : 0.040 467 REMARK 3 PLANARITY : 0.003 521 REMARK 3 DIHEDRAL : 24.367 1050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979490 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20131 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 67.352 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.17010 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.71450 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2HD5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 20000, 0.1 M SODIUM REMARK 280 CITRATE PH 5.4, 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 25.45850 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.05750 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 25.45850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.05750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 62 REMARK 465 PRO A 63 REMARK 465 ASP A 106 REMARK 465 GLN A 107 REMARK 465 LYS A 108 REMARK 465 GLU A 109 REMARK 465 PRO A 110 REMARK 465 PRO A 111 REMARK 465 SER A 112 REMARK 465 HIS A 113 REMARK 465 ILE A 290 REMARK 465 GLU A 291 REMARK 465 ALA A 292 REMARK 465 LYS A 293 REMARK 465 GLY A 294 REMARK 465 THR A 295 REMARK 465 LEU A 296 REMARK 465 ASN A 297 REMARK 465 GLY A 298 REMARK 465 GLU A 299 REMARK 465 LYS A 300 REMARK 465 VAL A 301 REMARK 465 GLU A 302 REMARK 465 HIS A 303 REMARK 465 GLN A 304 REMARK 465 ALA A 463 REMARK 465 ARG A 464 REMARK 465 ASN A 465 REMARK 465 PRO A 466 REMARK 465 LEU A 467 REMARK 465 SER A 468 REMARK 465 THR A 469 REMARK 465 AYE B 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 64 CD CE NZ REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 130 CG CD OE1 NE2 REMARK 470 ASP A 134 CG OD1 OD2 REMARK 470 SER A 156 OG REMARK 470 PHE A 157 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 HIS A 236 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 HIS A 239 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 241 OG REMARK 470 VAL A 282 CG1 CG2 REMARK 470 VAL A 283 CG1 CG2 REMARK 470 ASP A 285 CG OD1 OD2 REMARK 470 ASN A 286 CG OD1 ND2 REMARK 470 THR A 288 OG1 CG2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 VAL A 309 CG1 CG2 REMARK 470 LYS A 313 CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 LEU A 337 CG CD1 CD2 REMARK 470 GLN A 344 CG CD OE1 NE2 REMARK 470 SER A 350 OG REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 LYS A 355 CE NZ REMARK 470 HIS A 357 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 358 OG REMARK 470 ASN A 359 CG OD1 ND2 REMARK 470 SER A 432 OG REMARK 470 HIS A 449 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 483 CG CD CE NZ REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 61 CG1 CG2 CD1 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 763 O HOH A 766 0.55 REMARK 500 O CYS A 287 N LYS A 289 2.09 REMARK 500 OE1 GLU A 98 O HOH A 701 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 73 40.22 -98.84 REMARK 500 CYS A 287 0.47 -67.25 REMARK 500 THR A 288 -44.56 53.03 REMARK 500 ASP A 447 -154.59 -96.20 REMARK 500 ASP A 478 -110.11 51.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 776 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 777 DISTANCE = 8.68 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 CYS A 237 SG 108.0 REMARK 620 3 CYS A 284 SG 110.0 109.7 REMARK 620 4 CYS A 287 SG 112.6 107.7 108.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AYE A 602 DBREF 5OHK A 64 178 UNP Q70CQ3 UBP30_HUMAN 64 178 DBREF 5OHK A 217 357 UNP Q70CQ3 UBP30_HUMAN 217 357 DBREF 5OHK A 432 502 UNP Q70CQ3 UBP30_HUMAN 432 502 DBREF 5OHK B 1 76 UNP P0CG47 UBB_HUMAN 1 76 SEQADV 5OHK GLY A 62 UNP Q70CQ3 EXPRESSION TAG SEQADV 5OHK PRO A 63 UNP Q70CQ3 EXPRESSION TAG SEQADV 5OHK GLY A 179 UNP Q70CQ3 LINKER SEQADV 5OHK SER A 180 UNP Q70CQ3 LINKER SEQADV 5OHK GLY A 181 UNP Q70CQ3 LINKER SEQADV 5OHK SER A 182 UNP Q70CQ3 LINKER SEQADV 5OHK ASP A 348 UNP Q70CQ3 PHE 348 ENGINEERED MUTATION SEQADV 5OHK SER A 350 UNP Q70CQ3 MET 350 ENGINEERED MUTATION SEQADV 5OHK GLU A 353 UNP Q70CQ3 ILE 353 ENGINEERED MUTATION SEQADV 5OHK SER A 358 UNP Q70CQ3 LINKER SEQADV 5OHK ASN A 359 UNP Q70CQ3 LINKER SEQADV 5OHK ALA A 360 UNP Q70CQ3 LINKER SEQADV 5OHK AYE B 76 UNP P0CG47 GLY 76 ENGINEERED MUTATION SEQRES 1 A 336 GLY PRO LYS GLY LEU VAL PRO GLY LEU VAL ASN LEU GLY SEQRES 2 A 336 ASN THR CYS PHE MET ASN SER LEU LEU GLN GLY LEU SER SEQRES 3 A 336 ALA CYS PRO ALA PHE ILE ARG TRP LEU GLU GLU PHE THR SEQRES 4 A 336 SER GLN TYR SER ARG ASP GLN LYS GLU PRO PRO SER HIS SEQRES 5 A 336 GLN TYR LEU SER LEU THR LEU LEU HIS LEU LEU LYS ALA SEQRES 6 A 336 LEU SER CYS GLN GLU VAL THR ASP ASP GLU VAL LEU ASP SEQRES 7 A 336 ALA SER CYS LEU LEU ASP VAL LEU ARG MET TYR ARG TRP SEQRES 8 A 336 GLN ILE SER SER PHE GLU GLU GLN ASP ALA HIS GLU LEU SEQRES 9 A 336 PHE HIS VAL ILE THR SER SER LEU GLU ASP GLU ARG ASP SEQRES 10 A 336 GLY SER GLY SER HIS TRP LYS SER GLN HIS PRO PHE HIS SEQRES 11 A 336 GLY ARG LEU THR SER ASN MET VAL CYS LYS HIS CYS GLU SEQRES 12 A 336 HIS GLN SER PRO VAL ARG PHE ASP THR PHE ASP SER LEU SEQRES 13 A 336 SER LEU SER ILE PRO ALA ALA THR TRP GLY HIS PRO LEU SEQRES 14 A 336 THR LEU ASP HIS CYS LEU HIS HIS PHE ILE SER SER GLU SEQRES 15 A 336 SER VAL ARG ASP VAL VAL CYS ASP ASN CYS THR LYS ILE SEQRES 16 A 336 GLU ALA LYS GLY THR LEU ASN GLY GLU LYS VAL GLU HIS SEQRES 17 A 336 GLN ARG THR THR PHE VAL LYS GLN LEU LYS LEU GLY LYS SEQRES 18 A 336 LEU PRO GLN CYS LEU CYS ILE HIS LEU GLN ARG LEU SER SEQRES 19 A 336 TRP SER SER HIS GLY THR PRO LEU LYS ARG HIS GLU HIS SEQRES 20 A 336 VAL GLN PHE ASN GLU ASP LEU SER MET ASP GLU TYR LYS SEQRES 21 A 336 TYR HIS SER ASN ALA SER THR TYR LEU PHE ARG LEU MET SEQRES 22 A 336 ALA VAL VAL VAL HIS HIS GLY ASP MET HIS SER GLY HIS SEQRES 23 A 336 PHE VAL THR TYR ARG ARG SER PRO PRO SER ALA ARG ASN SEQRES 24 A 336 PRO LEU SER THR SER ASN GLN TRP LEU TRP VAL SER ASP SEQRES 25 A 336 ASP THR VAL ARG LYS ALA SER LEU GLN GLU VAL LEU SER SEQRES 26 A 336 SER SER ALA TYR LEU LEU PHE TYR GLU ARG VAL SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY AYE HET ZN A 601 1 HET AYE A 602 4 HETNAM ZN ZINC ION HETNAM AYE PROP-2-EN-1-AMINE HETSYN AYE ALLYLAMINE FORMUL 3 ZN ZN 2+ FORMUL 4 AYE C3 H7 N FORMUL 5 HOH *82(H2 O) HELIX 1 AA1 THR A 76 ALA A 88 1 13 HELIX 2 AA2 CYS A 89 SER A 101 1 13 HELIX 3 AA3 GLN A 102 ARG A 105 5 4 HELIX 4 AA4 TYR A 115 SER A 128 1 14 HELIX 5 AA5 ALA A 140 ARG A 151 1 12 HELIX 6 AA6 ASP A 161 GLY A 179 1 19 HELIX 7 AA7 THR A 265 SER A 275 1 11 HELIX 8 AA8 ASP A 352 LYS A 355 5 4 HELIX 9 AA9 SER A 485 SER A 492 1 8 HELIX 10 AB1 THR B 22 GLY B 35 1 14 HELIX 11 AB2 PRO B 37 GLN B 41 5 5 SHEET 1 AA1 2 GLY A 69 LEU A 70 0 SHEET 2 AA1 2 VAL A 137 LEU A 138 1 O LEU A 138 N GLY A 69 SHEET 1 AA2 4 GLN A 240 PHE A 248 0 SHEET 2 AA2 4 GLY A 226 CYS A 234 -1 N GLY A 226 O PHE A 248 SHEET 3 AA2 4 THR A 306 LYS A 316 -1 O VAL A 309 N VAL A 233 SHEET 4 AA2 4 GLU A 277 VAL A 282 -1 N VAL A 279 O PHE A 308 SHEET 1 AA3 5 LEU A 251 SER A 254 0 SHEET 2 AA3 5 CYS A 320 GLN A 326 1 O HIS A 324 N LEU A 251 SHEET 3 AA3 5 ALA A 494 VAL A 502 -1 O TYR A 499 N LEU A 321 SHEET 4 AA3 5 LEU A 435 HIS A 445 -1 N MET A 439 O PHE A 498 SHEET 5 AA3 5 ASP A 348 SER A 350 -1 N LEU A 349 O PHE A 436 SHEET 1 AA4 7 LEU A 251 SER A 254 0 SHEET 2 AA4 7 CYS A 320 GLN A 326 1 O HIS A 324 N LEU A 251 SHEET 3 AA4 7 ALA A 494 VAL A 502 -1 O TYR A 499 N LEU A 321 SHEET 4 AA4 7 LEU A 435 HIS A 445 -1 N MET A 439 O PHE A 498 SHEET 5 AA4 7 HIS A 452 ARG A 458 -1 O VAL A 454 N VAL A 443 SHEET 6 AA4 7 TRP A 473 SER A 477 -1 O VAL A 476 N THR A 455 SHEET 7 AA4 7 THR A 480 ALA A 484 -1 O ARG A 482 N TRP A 475 SHEET 1 AA5 2 LEU A 328 TRP A 330 0 SHEET 2 AA5 2 PRO A 336 LYS A 338 -1 O LEU A 337 N SER A 329 SHEET 1 AA6 5 THR B 12 GLU B 16 0 SHEET 2 AA6 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 AA6 5 THR B 66 VAL B 70 1 O LEU B 67 N LYS B 6 SHEET 4 AA6 5 ARG B 42 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA6 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK SG CYS A 77 C2 AYE A 602 1555 1555 1.79 LINK N1 AYE A 602 C GLY B 75 1555 1555 1.32 LINK SG CYS A 234 ZN ZN A 601 1555 1555 2.38 LINK SG CYS A 237 ZN ZN A 601 1555 1555 2.34 LINK SG CYS A 284 ZN ZN A 601 1555 1555 2.36 LINK SG CYS A 287 ZN ZN A 601 1555 1555 2.37 SITE 1 AC1 4 CYS A 234 CYS A 237 CYS A 284 CYS A 287 SITE 1 AC2 7 ASN A 72 ASN A 75 CYS A 77 GLU A 159 SITE 2 AC2 7 GLY A 451 HIS A 452 GLY B 75 CRYST1 50.917 94.408 96.115 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019640 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010404 0.00000