HEADER SIGNALING PROTEIN 18-JUL-17 5OHV TITLE K33-SPECIFIC AFFIMER BOUND TO K33 DIUB COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: K33-SPECIFIC AFFIMER; COMPND 7 CHAIN: D, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN, CYSTATIN, SIGNALING PROTEIN, AFFIMER EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MICHEL,D.KOMANDER REVDAT 3 17-JAN-24 5OHV 1 REMARK REVDAT 2 18-OCT-17 5OHV 1 JRNL REVDAT 1 04-OCT-17 5OHV 0 JRNL AUTH M.A.MICHEL,K.N.SWATEK,M.K.HOSPENTHAL,D.KOMANDER JRNL TITL UBIQUITIN LINKAGE-SPECIFIC AFFIMERS REVEAL INSIGHTS INTO JRNL TITL 2 K6-LINKED UBIQUITIN SIGNALING. JRNL REF MOL. CELL V. 68 233 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 28943312 JRNL DOI 10.1016/J.MOLCEL.2017.08.020 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.1578 - 4.0389 1.00 2970 123 0.1470 0.1852 REMARK 3 2 4.0389 - 3.2058 1.00 2970 137 0.1802 0.2424 REMARK 3 3 3.2058 - 2.8006 1.00 2989 102 0.2525 0.3123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2657 REMARK 3 ANGLE : 0.776 3581 REMARK 3 CHIRALITY : 0.031 407 REMARK 3 PLANARITY : 0.003 451 REMARK 3 DIHEDRAL : 15.440 983 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3762 10.9155 -45.1609 REMARK 3 T TENSOR REMARK 3 T11: 0.3513 T22: 0.5426 REMARK 3 T33: 0.3273 T12: -0.0596 REMARK 3 T13: -0.0310 T23: 0.1139 REMARK 3 L TENSOR REMARK 3 L11: 6.8242 L22: 6.0735 REMARK 3 L33: 5.6277 L12: 2.3481 REMARK 3 L13: -1.4846 L23: 4.2815 REMARK 3 S TENSOR REMARK 3 S11: 0.1764 S12: -0.9239 S13: -0.6448 REMARK 3 S21: 0.0526 S22: -0.1386 S23: 0.2912 REMARK 3 S31: 0.9344 S32: -0.3332 S33: -0.0025 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6582 11.0275 -34.1249 REMARK 3 T TENSOR REMARK 3 T11: 0.6898 T22: 0.6148 REMARK 3 T33: 0.5480 T12: -0.0193 REMARK 3 T13: -0.2199 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 2.0023 L22: 5.0826 REMARK 3 L33: 5.0155 L12: -1.6996 REMARK 3 L13: 1.1482 L23: 4.6515 REMARK 3 S TENSOR REMARK 3 S11: -0.1649 S12: 0.9956 S13: -0.1598 REMARK 3 S21: -0.3567 S22: 0.4843 S23: 1.0782 REMARK 3 S31: 2.7973 S32: 2.0471 S33: -0.4518 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0337 9.9144 -45.5670 REMARK 3 T TENSOR REMARK 3 T11: 0.4962 T22: 0.4807 REMARK 3 T33: 0.5992 T12: 0.0871 REMARK 3 T13: 0.0048 T23: 0.1560 REMARK 3 L TENSOR REMARK 3 L11: 8.8745 L22: 9.6740 REMARK 3 L33: 3.8026 L12: 2.3150 REMARK 3 L13: -5.2925 L23: 1.0259 REMARK 3 S TENSOR REMARK 3 S11: -0.8892 S12: -0.8095 S13: -1.3012 REMARK 3 S21: 0.6238 S22: 0.2177 S23: -0.5584 REMARK 3 S31: 0.7169 S32: 0.7609 S33: 0.3105 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6385 19.6668 -45.7445 REMARK 3 T TENSOR REMARK 3 T11: 0.4005 T22: 0.3745 REMARK 3 T33: 0.7305 T12: -0.0355 REMARK 3 T13: -0.0214 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 7.2467 L22: 7.6452 REMARK 3 L33: 5.4527 L12: -5.3290 REMARK 3 L13: -1.6729 L23: 0.4431 REMARK 3 S TENSOR REMARK 3 S11: 0.2923 S12: -0.4949 S13: 0.6405 REMARK 3 S21: -0.0146 S22: 0.0941 S23: -1.6066 REMARK 3 S31: -0.1589 S32: 0.7531 S33: -0.2971 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9461 17.2127 -34.1291 REMARK 3 T TENSOR REMARK 3 T11: 0.4611 T22: 0.6768 REMARK 3 T33: 0.5539 T12: 0.0222 REMARK 3 T13: -0.0430 T23: 0.0796 REMARK 3 L TENSOR REMARK 3 L11: 3.4064 L22: 9.2589 REMARK 3 L33: 3.2984 L12: -2.9361 REMARK 3 L13: -2.6468 L23: -0.5875 REMARK 3 S TENSOR REMARK 3 S11: -0.3744 S12: 0.2239 S13: -0.3952 REMARK 3 S21: 0.2589 S22: 0.3928 S23: 0.3919 REMARK 3 S31: -0.5104 S32: -0.5490 S33: -0.0405 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3713 19.5442 -51.4335 REMARK 3 T TENSOR REMARK 3 T11: 0.6917 T22: 0.3091 REMARK 3 T33: 0.5819 T12: 0.0124 REMARK 3 T13: 0.0523 T23: 0.0546 REMARK 3 L TENSOR REMARK 3 L11: 2.0798 L22: 5.1546 REMARK 3 L33: 1.5331 L12: 2.2676 REMARK 3 L13: -0.3355 L23: -2.3306 REMARK 3 S TENSOR REMARK 3 S11: 0.7146 S12: -0.1231 S13: 0.8578 REMARK 3 S21: -0.0641 S22: -0.0596 S23: -0.5366 REMARK 3 S31: -1.9344 S32: 0.0780 S33: 0.3969 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0520 22.6368 -67.1611 REMARK 3 T TENSOR REMARK 3 T11: 0.5918 T22: 0.4306 REMARK 3 T33: 0.3190 T12: -0.0164 REMARK 3 T13: 0.1424 T23: 0.0911 REMARK 3 L TENSOR REMARK 3 L11: 3.4444 L22: 4.0733 REMARK 3 L33: 7.9256 L12: 0.7260 REMARK 3 L13: -0.1467 L23: 2.2826 REMARK 3 S TENSOR REMARK 3 S11: -0.2393 S12: -0.1262 S13: -0.5340 REMARK 3 S21: -0.9948 S22: -0.0599 S23: -0.4381 REMARK 3 S31: -1.1298 S32: 1.0391 S33: 0.1752 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 12 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5297 15.9800 -74.4599 REMARK 3 T TENSOR REMARK 3 T11: 0.8283 T22: 0.6674 REMARK 3 T33: 0.7302 T12: -0.0783 REMARK 3 T13: 0.3074 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 3.8876 L22: 7.4580 REMARK 3 L33: 7.6337 L12: 0.6229 REMARK 3 L13: 0.1300 L23: 3.6927 REMARK 3 S TENSOR REMARK 3 S11: -0.1529 S12: 0.4694 S13: -0.1438 REMARK 3 S21: -1.4533 S22: 0.3551 S23: -0.7754 REMARK 3 S31: -0.2664 S32: 0.9901 S33: -0.1415 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 23 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8183 10.8584 -67.2442 REMARK 3 T TENSOR REMARK 3 T11: 0.5299 T22: 0.5617 REMARK 3 T33: 0.8808 T12: 0.1455 REMARK 3 T13: 0.1429 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 4.5448 L22: 9.2112 REMARK 3 L33: 9.3581 L12: 4.0676 REMARK 3 L13: 6.3258 L23: 4.0477 REMARK 3 S TENSOR REMARK 3 S11: 0.7254 S12: 0.9326 S13: -0.7551 REMARK 3 S21: 0.2216 S22: 0.5182 S23: -1.5220 REMARK 3 S31: 0.5880 S32: 1.1144 S33: -1.2991 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 35 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5016 12.7333 -71.7457 REMARK 3 T TENSOR REMARK 3 T11: 0.6573 T22: 0.4161 REMARK 3 T33: 0.4650 T12: 0.1610 REMARK 3 T13: -0.0308 T23: -0.0748 REMARK 3 L TENSOR REMARK 3 L11: 8.5088 L22: 3.3778 REMARK 3 L33: 7.6840 L12: 0.7792 REMARK 3 L13: 0.7444 L23: 2.3118 REMARK 3 S TENSOR REMARK 3 S11: 0.3407 S12: 0.7116 S13: -0.6651 REMARK 3 S21: -1.0504 S22: -0.0015 S23: 0.3418 REMARK 3 S31: 0.4015 S32: -0.0313 S33: -0.3194 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 66 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4411 13.7048 -61.6100 REMARK 3 T TENSOR REMARK 3 T11: 0.3795 T22: 0.3917 REMARK 3 T33: 0.4985 T12: -0.0027 REMARK 3 T13: 0.0266 T23: 0.0798 REMARK 3 L TENSOR REMARK 3 L11: 7.5316 L22: 7.7024 REMARK 3 L33: 8.0685 L12: -1.4037 REMARK 3 L13: 3.0282 L23: 2.0416 REMARK 3 S TENSOR REMARK 3 S11: 0.5993 S12: -0.6455 S13: -0.6576 REMARK 3 S21: 0.0939 S22: -0.4101 S23: -0.4599 REMARK 3 S31: 0.8096 S32: -0.3714 S33: -0.1017 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 34 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0865 21.1138 -65.1715 REMARK 3 T TENSOR REMARK 3 T11: 0.4910 T22: 0.7971 REMARK 3 T33: 0.5556 T12: 0.0416 REMARK 3 T13: -0.0141 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 2.8240 L22: 6.1716 REMARK 3 L33: 8.8291 L12: 0.0201 REMARK 3 L13: -1.5357 L23: -4.3037 REMARK 3 S TENSOR REMARK 3 S11: 0.1015 S12: 1.4199 S13: 0.1160 REMARK 3 S21: -0.2369 S22: 0.1888 S23: 0.8412 REMARK 3 S31: -0.4251 S32: -0.9467 S33: -0.0302 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 63 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2133 17.5525 -45.8072 REMARK 3 T TENSOR REMARK 3 T11: 0.3865 T22: 0.5546 REMARK 3 T33: 0.5291 T12: 0.1329 REMARK 3 T13: 0.0125 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 1.9008 L22: 4.7031 REMARK 3 L33: 6.9224 L12: 1.2143 REMARK 3 L13: -1.1312 L23: -0.8396 REMARK 3 S TENSOR REMARK 3 S11: -0.3038 S12: -1.5011 S13: -0.2595 REMARK 3 S21: 0.3159 S22: -0.0260 S23: -0.6631 REMARK 3 S31: 0.0840 S32: -0.0823 S33: 0.6078 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 74 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7727 18.4602 -57.0357 REMARK 3 T TENSOR REMARK 3 T11: 0.4757 T22: 0.4961 REMARK 3 T33: 0.3422 T12: 0.0426 REMARK 3 T13: 0.0049 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 4.9971 L22: 3.6910 REMARK 3 L33: 2.4934 L12: 1.5457 REMARK 3 L13: -1.0958 L23: 0.8590 REMARK 3 S TENSOR REMARK 3 S11: -0.3565 S12: 0.4975 S13: 0.3240 REMARK 3 S21: -0.4195 S22: 0.0117 S23: 0.3359 REMARK 3 S31: 0.1085 S32: -0.5589 S33: 0.2639 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0606 39.7794 -48.5016 REMARK 3 T TENSOR REMARK 3 T11: 0.8068 T22: 0.3858 REMARK 3 T33: 0.6790 T12: -0.1007 REMARK 3 T13: 0.0208 T23: -0.0718 REMARK 3 L TENSOR REMARK 3 L11: 9.3887 L22: 2.1749 REMARK 3 L33: 7.9338 L12: -2.1246 REMARK 3 L13: -3.7062 L23: -2.9846 REMARK 3 S TENSOR REMARK 3 S11: -0.4445 S12: -0.7518 S13: 0.5106 REMARK 3 S21: 1.2634 S22: 0.0726 S23: 0.7882 REMARK 3 S31: -0.2399 S32: -0.3647 S33: 0.3046 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4685 41.5671 -56.0996 REMARK 3 T TENSOR REMARK 3 T11: 0.4760 T22: 0.4147 REMARK 3 T33: 0.3762 T12: 0.0311 REMARK 3 T13: 0.0390 T23: 0.0463 REMARK 3 L TENSOR REMARK 3 L11: 1.3912 L22: 7.6252 REMARK 3 L33: 1.2553 L12: 0.6621 REMARK 3 L13: 1.0319 L23: -1.6443 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: -0.1420 S13: 0.1829 REMARK 3 S21: 0.4954 S22: 0.0151 S23: 0.5364 REMARK 3 S31: -0.4855 S32: -0.2254 S33: -0.0234 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4498 31.7135 -56.4887 REMARK 3 T TENSOR REMARK 3 T11: 0.3674 T22: 0.3448 REMARK 3 T33: 0.2268 T12: 0.0641 REMARK 3 T13: 0.0552 T23: 0.0484 REMARK 3 L TENSOR REMARK 3 L11: 4.1433 L22: 9.8760 REMARK 3 L33: 4.7041 L12: 3.5945 REMARK 3 L13: 2.9725 L23: 4.0738 REMARK 3 S TENSOR REMARK 3 S11: -0.1289 S12: 0.5000 S13: 0.1776 REMARK 3 S21: 0.0460 S22: 0.0223 S23: -0.0803 REMARK 3 S31: -0.1535 S32: 0.0910 S33: 0.1895 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979490 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9294 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 60.144 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.23700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.79400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UBQ, 4N6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 3350 200 MM LI2SO4 100 MM REMARK 280 NAOAC PH 5.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.14400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.72415 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.32433 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 60.14400 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 34.72415 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.32433 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 60.14400 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 34.72415 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.32433 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.44831 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 46.64867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 69.44831 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 46.64867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 69.44831 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 46.64867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 GLY C 75 REMARK 465 GLY C 76 REMARK 465 MET D 19 REMARK 465 SER D 20 REMARK 465 ALA D 21 REMARK 465 ALA D 22 REMARK 465 THR D 23 REMARK 465 GLY D 24 REMARK 465 VAL D 25 REMARK 465 ARG D 26 REMARK 465 ALA D 27 REMARK 465 VAL D 28 REMARK 465 PRO D 29 REMARK 465 GLY D 30 REMARK 465 ASN D 31 REMARK 465 GLY D 122 REMARK 465 ASP D 123 REMARK 465 ALA D 124 REMARK 465 ALA D 125 REMARK 465 ALA D 126 REMARK 465 ALA D 127 REMARK 465 HIS D 128 REMARK 465 HIS D 129 REMARK 465 HIS D 130 REMARK 465 HIS D 131 REMARK 465 HIS D 132 REMARK 465 HIS D 133 REMARK 465 GLY D 134 REMARK 465 MET B 19 REMARK 465 SER B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 THR B 23 REMARK 465 GLY B 24 REMARK 465 VAL B 25 REMARK 465 ARG B 26 REMARK 465 ALA B 27 REMARK 465 VAL B 28 REMARK 465 PRO B 29 REMARK 465 GLY B 30 REMARK 465 ASN B 31 REMARK 465 GLU B 32 REMARK 465 GLY B 122 REMARK 465 ASP B 123 REMARK 465 ALA B 124 REMARK 465 ALA B 125 REMARK 465 ALA B 126 REMARK 465 ALA B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 GLY B 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 GLN A 49 CG CD OE1 NE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 LYS C 33 NZ REMARK 470 ARG C 42 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 49 CG CD OE1 NE2 REMARK 470 LYS C 63 CG CD CE NZ REMARK 470 LEU D 35 CG CD1 CD2 REMARK 470 GLU D 36 CG CD OE1 OE2 REMARK 470 GLU D 39 CG CD OE1 OE2 REMARK 470 GLU D 57 CG CD OE1 OE2 REMARK 470 LYS D 65 CG CD CE NZ REMARK 470 LYS D 75 NZ REMARK 470 LYS D 86 CG CD CE NZ REMARK 470 LYS D 90 CG CD CE NZ REMARK 470 LYS D 92 CG CD CE NZ REMARK 470 LYS D 119 CG CD CE NZ REMARK 470 LEU B 35 CG CD1 CD2 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 LYS B 65 CE NZ REMARK 470 ASP B 72 CG OD1 OD2 REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 ASP B 87 CG OD1 OD2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 LYS B 119 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP C 39 NH1 ARG C 72 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 DBREF 5OHV A 1 76 UNP P0CG48 UBC_HUMAN 1 76 DBREF 5OHV C 1 76 UNP P0CG48 UBC_HUMAN 1 76 DBREF 5OHV D 19 134 PDB 5OHV 5OHV 19 134 DBREF 5OHV B 19 134 PDB 5OHV 5OHV 19 134 SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 D 116 MET SER ALA ALA THR GLY VAL ARG ALA VAL PRO GLY ASN SEQRES 2 D 116 GLU ASN SER LEU GLU ILE GLU GLU LEU ALA ARG PHE ALA SEQRES 3 D 116 VAL ASP GLU HIS ASN LYS LYS GLU ASN ALA LEU LEU GLU SEQRES 4 D 116 PHE VAL ARG VAL VAL LYS ALA LYS GLU GLN ILE TRP GLU SEQRES 5 D 116 MET ASP ALA SER LYS GLU THR MET TYR TYR LEU THR LEU SEQRES 6 D 116 GLU ALA LYS ASP GLY GLY LYS LYS LYS LEU TYR GLU ALA SEQRES 7 D 116 LYS VAL TRP VAL LYS MET THR HIS TRP ILE GLY ALA MET SEQRES 8 D 116 ASN ASN PHE LYS GLU LEU GLN GLU PHE LYS PRO VAL GLY SEQRES 9 D 116 ASP ALA ALA ALA ALA HIS HIS HIS HIS HIS HIS GLY SEQRES 1 B 116 MET SER ALA ALA THR GLY VAL ARG ALA VAL PRO GLY ASN SEQRES 2 B 116 GLU ASN SER LEU GLU ILE GLU GLU LEU ALA ARG PHE ALA SEQRES 3 B 116 VAL ASP GLU HIS ASN LYS LYS GLU ASN ALA LEU LEU GLU SEQRES 4 B 116 PHE VAL ARG VAL VAL LYS ALA LYS GLU GLN ILE TRP GLU SEQRES 5 B 116 MET ASP ALA SER LYS GLU THR MET TYR TYR LEU THR LEU SEQRES 6 B 116 GLU ALA LYS ASP GLY GLY LYS LYS LYS LEU TYR GLU ALA SEQRES 7 B 116 LYS VAL TRP VAL LYS MET THR HIS TRP ILE GLY ALA MET SEQRES 8 B 116 ASN ASN PHE LYS GLU LEU GLN GLU PHE LYS PRO VAL GLY SEQRES 9 B 116 ASP ALA ALA ALA ALA HIS HIS HIS HIS HIS HIS GLY HET SO4 A 101 5 HET GOL A 102 6 HET GOL A 103 6 HET SO4 C 101 5 HET GOL C 102 6 HET GOL B 201 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 GOL 4(C3 H8 O3) FORMUL 11 HOH *15(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 THR C 22 GLY C 35 1 14 HELIX 4 AA4 PRO C 37 ASP C 39 5 3 HELIX 5 AA5 LEU C 56 ASN C 60 5 5 HELIX 6 AA6 ASN D 33 ASN D 53 1 21 HELIX 7 AA7 SER B 34 ASN B 53 1 20 SHEET 1 AA1 4 THR A 12 GLU A 16 0 SHEET 2 AA1 4 GLN A 2 LYS A 6 -1 N VAL A 5 O ILE A 13 SHEET 3 AA1 4 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA1 4 GLN A 41 ILE A 44 -1 N ILE A 44 O HIS A 68 SHEET 1 AA2 4 THR C 12 GLU C 16 0 SHEET 2 AA2 4 GLN C 2 LYS C 6 -1 N VAL C 5 O ILE C 13 SHEET 3 AA2 4 THR C 66 LEU C 71 1 O LEU C 67 N PHE C 4 SHEET 4 AA2 4 GLN C 41 ILE C 44 -1 N ILE C 44 O HIS C 68 SHEET 1 AA3 8 GLU D 57 MET D 71 0 SHEET 2 AA3 8 SER D 74 LYS D 86 -1 O TYR D 80 N LYS D 65 SHEET 3 AA3 8 LYS D 91 TRP D 105 -1 O VAL D 98 N TYR D 79 SHEET 4 AA3 8 ALA D 108 PRO D 120 -1 O GLU D 114 N TRP D 99 SHEET 5 AA3 8 ALA B 108 PRO B 120 -1 O ASN B 111 N ASN D 111 SHEET 6 AA3 8 LYS B 91 TRP B 105 -1 N GLU B 95 O LYS B 119 SHEET 7 AA3 8 SER B 74 LYS B 86 -1 N TYR B 79 O VAL B 98 SHEET 8 AA3 8 GLU B 57 MET B 71 -1 N TRP B 69 O GLU B 76 SITE 1 AC1 4 ARG A 42 ARG A 72 ARG A 74 LYS C 11 SITE 1 AC2 2 LYS A 6 GLU D 76 SITE 1 AC3 3 THR A 9 LYS A 11 GLU D 114 SITE 1 AC4 4 LYS A 11 GLN C 31 ASP C 39 ARG C 72 SITE 1 AC5 3 THR C 9 GLY C 10 LYS C 11 SITE 1 AC6 4 TRP B 69 GLU B 76 TRP B 99 LYS C 6 CRYST1 120.288 120.288 69.973 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008313 0.004800 0.000000 0.00000 SCALE2 0.000000 0.009599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014291 0.00000