HEADER HYDROLASE 18-JUL-17 5OI1 TITLE CRYSTAL STRUCTURE OF MYCOLICIBACTERIUM HASSIACUM GLUCOSYLGLYCERATE TITLE 2 HYDROLASE (MHGGH) D182A VARIANT IN COMPLEX WITH SERINE AND GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM HASSIACUM (STRAIN DSM 44199 / CIP SOURCE 3 105218 / JCM 12690 / 3849); SOURCE 4 ORGANISM_TAXID: 1122247; SOURCE 5 GENE: C731_0006; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYCOBACTERIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.B.CEREIJA,S.MACEDO-RIBEIRO,P.J.B.PEREIRA REVDAT 4 17-JAN-24 5OI1 1 REMARK REVDAT 3 31-JUL-19 5OI1 1 JRNL REVDAT 2 15-MAY-19 5OI1 1 TITLE JRNL REVDAT 1 08-AUG-18 5OI1 0 JRNL AUTH T.B.CEREIJA,S.ALARICO,E.C.LOURENCO,J.A.MANSO,M.R.VENTURA, JRNL AUTH 2 N.EMPADINHAS,S.MACEDO-RIBEIRO,P.J.B.PEREIRA JRNL TITL THE STRUCTURAL CHARACTERIZATION OF A GLUCOSYLGLYCERATE JRNL TITL 2 HYDROLASE PROVIDES INSIGHTS INTO THE MOLECULAR MECHANISM OF JRNL TITL 3 MYCOBACTERIAL RECOVERY FROM NITROGEN STARVATION. JRNL REF IUCRJ V. 6 572 2019 JRNL REFN ESSN 2052-2525 JRNL PMID 31316802 JRNL DOI 10.1107/S2052252519005372 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 119673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 5953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0176 - 5.4333 0.98 4062 205 0.1706 0.1671 REMARK 3 2 5.4333 - 4.3142 0.99 3935 202 0.1288 0.1456 REMARK 3 3 4.3142 - 3.7693 0.99 3891 203 0.1142 0.1298 REMARK 3 4 3.7693 - 3.4249 0.99 3877 196 0.1233 0.1504 REMARK 3 5 3.4249 - 3.1795 0.99 3809 244 0.1341 0.1585 REMARK 3 6 3.1795 - 2.9921 0.99 3847 215 0.1340 0.1562 REMARK 3 7 2.9921 - 2.8423 1.00 3803 232 0.1395 0.1836 REMARK 3 8 2.8423 - 2.7186 0.99 3802 195 0.1441 0.1781 REMARK 3 9 2.7186 - 2.6140 0.88 3398 132 0.1407 0.2083 REMARK 3 10 2.6140 - 2.5238 0.90 3497 175 0.1471 0.1639 REMARK 3 11 2.5238 - 2.4449 0.98 3758 188 0.1429 0.1659 REMARK 3 12 2.4449 - 2.3750 0.99 3784 194 0.1428 0.1989 REMARK 3 13 2.3750 - 2.3125 0.99 3820 183 0.1390 0.1629 REMARK 3 14 2.3125 - 2.2561 1.00 3860 159 0.1384 0.1701 REMARK 3 15 2.2561 - 2.2048 1.00 3808 170 0.1379 0.1588 REMARK 3 16 2.2048 - 2.1579 1.00 3791 222 0.1394 0.1645 REMARK 3 17 2.1579 - 2.1147 1.00 3793 228 0.1513 0.1964 REMARK 3 18 2.1147 - 2.0748 1.00 3792 208 0.1538 0.1867 REMARK 3 19 2.0748 - 2.0378 1.00 3814 193 0.1577 0.1944 REMARK 3 20 2.0378 - 2.0032 1.00 3788 197 0.1582 0.2277 REMARK 3 21 2.0032 - 1.9709 1.00 3846 188 0.1696 0.1884 REMARK 3 22 1.9709 - 1.9406 1.00 3759 225 0.1773 0.2154 REMARK 3 23 1.9406 - 1.9120 1.00 3768 220 0.1834 0.2065 REMARK 3 24 1.9120 - 1.8851 1.00 3785 193 0.1973 0.2262 REMARK 3 25 1.8851 - 1.8596 1.00 3774 200 0.2009 0.2423 REMARK 3 26 1.8596 - 1.8355 0.99 3768 194 0.2175 0.2629 REMARK 3 27 1.8355 - 1.8125 0.99 3796 198 0.2256 0.2655 REMARK 3 28 1.8125 - 1.7907 0.99 3763 193 0.2471 0.2577 REMARK 3 29 1.7907 - 1.7699 0.99 3777 212 0.2496 0.2995 REMARK 3 30 1.7699 - 1.7500 0.99 3755 189 0.2590 0.2802 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7896 REMARK 3 ANGLE : 1.019 10794 REMARK 3 CHIRALITY : 0.065 1093 REMARK 3 PLANARITY : 0.007 1433 REMARK 3 DIHEDRAL : 18.959 4657 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.2850 9.3142 -37.4446 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.1072 REMARK 3 T33: 0.1726 T12: -0.0165 REMARK 3 T13: -0.0041 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.9753 L22: 4.3110 REMARK 3 L33: 3.6117 L12: -0.5957 REMARK 3 L13: 0.2561 L23: 1.4205 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: -0.0447 S13: -0.0834 REMARK 3 S21: 0.2254 S22: 0.0291 S23: -0.1505 REMARK 3 S31: 0.0765 S32: 0.0921 S33: -0.0251 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.7561 23.6426 -22.2478 REMARK 3 T TENSOR REMARK 3 T11: 0.4118 T22: 0.2029 REMARK 3 T33: 0.1777 T12: -0.0463 REMARK 3 T13: -0.0083 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 6.0903 L22: 2.7952 REMARK 3 L33: 5.3154 L12: -0.3432 REMARK 3 L13: 0.6697 L23: 0.5758 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.7356 S13: -0.1029 REMARK 3 S21: 0.7904 S22: 0.0160 S23: -0.0206 REMARK 3 S31: 0.1420 S32: 0.0019 S33: -0.0111 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.8181 30.1741 -39.7763 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.1269 REMARK 3 T33: 0.2079 T12: -0.0121 REMARK 3 T13: -0.0058 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.1570 L22: 1.2006 REMARK 3 L33: 1.1186 L12: 0.1129 REMARK 3 L13: -0.0271 L23: 0.0731 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: -0.0569 S13: 0.1610 REMARK 3 S21: 0.1244 S22: 0.0057 S23: -0.1075 REMARK 3 S31: -0.2248 S32: 0.0444 S33: -0.0115 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 366 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.3981 17.4708 -48.3931 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.1224 REMARK 3 T33: 0.2113 T12: -0.0166 REMARK 3 T13: 0.0161 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.5199 L22: 1.1955 REMARK 3 L33: 1.6026 L12: -0.1879 REMARK 3 L13: 0.5380 L23: 0.0854 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.0425 S13: 0.0120 REMARK 3 S21: -0.0035 S22: 0.0276 S23: -0.2585 REMARK 3 S31: -0.0564 S32: 0.1627 S33: -0.0446 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.3649 6.8755 -80.1118 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.2349 REMARK 3 T33: 0.1677 T12: 0.0653 REMARK 3 T13: 0.0101 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 1.3693 L22: 4.0764 REMARK 3 L33: 3.9172 L12: -1.7889 REMARK 3 L13: 1.6526 L23: -1.2754 REMARK 3 S TENSOR REMARK 3 S11: 0.1723 S12: 0.1798 S13: -0.1468 REMARK 3 S21: -0.2974 S22: -0.1487 S23: 0.0575 REMARK 3 S31: 0.1320 S32: -0.0950 S33: -0.0282 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.9470 19.3539 -89.4078 REMARK 3 T TENSOR REMARK 3 T11: 0.3394 T22: 0.3914 REMARK 3 T33: 0.1971 T12: 0.1532 REMARK 3 T13: 0.0162 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 2.4729 L22: 0.9471 REMARK 3 L33: 5.0455 L12: -0.0482 REMARK 3 L13: 1.9998 L23: 0.0236 REMARK 3 S TENSOR REMARK 3 S11: 0.2568 S12: 0.6772 S13: -0.0365 REMARK 3 S21: -0.4073 S22: -0.2234 S23: 0.0088 REMARK 3 S31: -0.0161 S32: 0.0797 S33: -0.0728 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.7749 19.9315 -75.8147 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.2534 REMARK 3 T33: 0.1992 T12: 0.0800 REMARK 3 T13: -0.0341 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.0879 L22: 1.2415 REMARK 3 L33: 1.3879 L12: -0.2512 REMARK 3 L13: -0.0944 L23: 0.0412 REMARK 3 S TENSOR REMARK 3 S11: 0.1037 S12: 0.2362 S13: -0.0184 REMARK 3 S21: -0.1910 S22: -0.1268 S23: 0.2153 REMARK 3 S31: -0.1426 S32: -0.2199 S33: 0.0099 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 42.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.98700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-BICINE PH 8.5, AMINO ACIDS, PEG REMARK 280 4000, GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.14300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.02300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.14300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.02300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -86.28600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 615 O HOH A 957 2.04 REMARK 500 O HOH B 788 O HOH B 947 2.09 REMARK 500 O HOH A 772 O HOH A 826 2.19 REMARK 500 O HOH A 946 O HOH A 991 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 37 35.14 -86.53 REMARK 500 SER A 55 105.22 -162.43 REMARK 500 THR A 114 -167.93 -112.61 REMARK 500 GLU A 319 72.33 -109.23 REMARK 500 GLU A 319 68.39 -113.63 REMARK 500 PHE A 349 -109.29 -131.88 REMARK 500 TYR A 375 -107.41 63.47 REMARK 500 PRO B 37 35.45 -84.32 REMARK 500 SER B 55 108.66 -162.73 REMARK 500 ASN B 107 50.62 -117.38 REMARK 500 THR B 114 -168.39 -111.18 REMARK 500 GLU B 319 72.85 -113.67 REMARK 500 PHE B 349 -111.37 -132.63 REMARK 500 GLU B 374 68.64 -100.95 REMARK 500 TYR B 375 -107.52 64.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SER A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SER B 504 DBREF 5OI1 A 1 446 UNP K5BDL0 K5BDL0_MYCHD 1 446 DBREF 5OI1 B 1 446 UNP K5BDL0 K5BDL0_MYCHD 1 446 SEQADV 5OI1 GLY A -1 UNP K5BDL0 EXPRESSION TAG SEQADV 5OI1 ALA A 0 UNP K5BDL0 EXPRESSION TAG SEQADV 5OI1 ALA A 182 UNP K5BDL0 ASP 182 ENGINEERED MUTATION SEQADV 5OI1 GLY B -1 UNP K5BDL0 EXPRESSION TAG SEQADV 5OI1 ALA B 0 UNP K5BDL0 EXPRESSION TAG SEQADV 5OI1 ALA B 182 UNP K5BDL0 ASP 182 ENGINEERED MUTATION SEQRES 1 A 448 GLY ALA MET PRO HIS ASP PRO SER PHE THR PRO THR GLN SEQRES 2 A 448 LEU ALA ALA ARG ALA ALA TYR LEU LEU ARG GLY ASN ASP SEQRES 3 A 448 LEU GLY THR MET THR THR ALA ALA PRO LEU LEU TYR PRO SEQRES 4 A 448 HIS MET TRP SER TRP ASP ALA ALA PHE VAL ALA ILE GLY SEQRES 5 A 448 LEU ALA PRO LEU SER VAL GLU ARG ALA VAL VAL GLU LEU SEQRES 6 A 448 ASP THR LEU LEU SER ALA GLN TRP ARG ASN GLY MET ILE SEQRES 7 A 448 PRO HIS ILE VAL PHE ALA ASN GLY VAL ASP GLY TYR PHE SEQRES 8 A 448 PRO GLY PRO ALA ARG TRP ALA THR ALA THR LEU ALA ASP SEQRES 9 A 448 ASN ALA PRO ARG ASN ARG LEU THR SER GLY ILE THR GLN SEQRES 10 A 448 PRO PRO VAL HIS ALA ILE ALA VAL GLN ARG ILE LEU GLU SEQRES 11 A 448 HIS ALA ARG THR ARG GLY ARG SER THR ARG ALA VAL ALA SEQRES 12 A 448 GLU ALA PHE LEU ASP ARG ARG TRP GLY ASP LEU MET ARG SEQRES 13 A 448 TRP HIS ARG TRP LEU ALA GLU CYS ARG ASP ARG ASN GLU SEQRES 14 A 448 ARG GLY ARG ILE THR LEU TYR HIS GLY TRP GLU SER GLY SEQRES 15 A 448 MET ALA ASN SER PRO ARG TRP ASP SER ALA TYR ALA ASN SEQRES 16 A 448 VAL VAL PRO GLY LYS LEU PRO GLU TYR GLN ARG ALA ASP SEQRES 17 A 448 ASN VAL ILE ILE THR ASP PRO SER GLN ARG PRO SER ASP SEQRES 18 A 448 GLY GLU TYR ASP ARG TYR LEU TRP LEU LEU GLU GLU MET SEQRES 19 A 448 LYS ALA VAL ARG TYR ASP ASP GLU ARG LEU PRO SER VAL SEQRES 20 A 448 MET SER PHE GLN VAL GLU ASP VAL PHE PHE SER ALA ILE SEQRES 21 A 448 PHE SER VAL ALA CYS GLN VAL LEU ALA GLU ILE GLY GLU SEQRES 22 A 448 ASP TYR LYS ARG PRO HIS ALA ASP VAL LYS ASP LEU TYR SEQRES 23 A 448 LEU TRP ALA GLU ARG PHE ARG ALA GLY VAL VAL GLU THR SEQRES 24 A 448 THR ASP GLN ARG THR GLY ALA ALA ARG ASP PHE ASP VAL SEQRES 25 A 448 LEU ALA GLU LYS TRP LEU VAL THR GLU THR ALA ALA GLN SEQRES 26 A 448 PHE ALA PRO LEU LEU CYS GLY GLY LEU PRO HIS ASP ARG SEQRES 27 A 448 GLU ARG ALA LEU LEU LYS LEU LEU GLU GLY PRO ARG PHE SEQRES 28 A 448 CYS GLY HIS PRO ASP LEU LYS TYR GLY LEU ILE PRO SER SEQRES 29 A 448 THR SER PRO VAL SER ARG ASP PHE ARG PRO ARG GLU TYR SEQRES 30 A 448 TRP ARG GLY PRO VAL TRP PRO VAL LEU THR TRP LEU PHE SEQRES 31 A 448 SER TRP CYS PHE ALA ARG ARG GLY TRP ALA GLU ARG ALA SEQRES 32 A 448 ARG LEU LEU ARG GLN GLU GLY LEU ARG GLN ALA SER ASP SEQRES 33 A 448 GLY SER PHE ALA GLU TYR TYR GLU PRO PHE THR GLY GLU SEQRES 34 A 448 PRO LEU GLY SER MET GLN GLN SER TRP THR ALA ALA ALA SEQRES 35 A 448 VAL LEU ASP TRP LEU GLY SEQRES 1 B 448 GLY ALA MET PRO HIS ASP PRO SER PHE THR PRO THR GLN SEQRES 2 B 448 LEU ALA ALA ARG ALA ALA TYR LEU LEU ARG GLY ASN ASP SEQRES 3 B 448 LEU GLY THR MET THR THR ALA ALA PRO LEU LEU TYR PRO SEQRES 4 B 448 HIS MET TRP SER TRP ASP ALA ALA PHE VAL ALA ILE GLY SEQRES 5 B 448 LEU ALA PRO LEU SER VAL GLU ARG ALA VAL VAL GLU LEU SEQRES 6 B 448 ASP THR LEU LEU SER ALA GLN TRP ARG ASN GLY MET ILE SEQRES 7 B 448 PRO HIS ILE VAL PHE ALA ASN GLY VAL ASP GLY TYR PHE SEQRES 8 B 448 PRO GLY PRO ALA ARG TRP ALA THR ALA THR LEU ALA ASP SEQRES 9 B 448 ASN ALA PRO ARG ASN ARG LEU THR SER GLY ILE THR GLN SEQRES 10 B 448 PRO PRO VAL HIS ALA ILE ALA VAL GLN ARG ILE LEU GLU SEQRES 11 B 448 HIS ALA ARG THR ARG GLY ARG SER THR ARG ALA VAL ALA SEQRES 12 B 448 GLU ALA PHE LEU ASP ARG ARG TRP GLY ASP LEU MET ARG SEQRES 13 B 448 TRP HIS ARG TRP LEU ALA GLU CYS ARG ASP ARG ASN GLU SEQRES 14 B 448 ARG GLY ARG ILE THR LEU TYR HIS GLY TRP GLU SER GLY SEQRES 15 B 448 MET ALA ASN SER PRO ARG TRP ASP SER ALA TYR ALA ASN SEQRES 16 B 448 VAL VAL PRO GLY LYS LEU PRO GLU TYR GLN ARG ALA ASP SEQRES 17 B 448 ASN VAL ILE ILE THR ASP PRO SER GLN ARG PRO SER ASP SEQRES 18 B 448 GLY GLU TYR ASP ARG TYR LEU TRP LEU LEU GLU GLU MET SEQRES 19 B 448 LYS ALA VAL ARG TYR ASP ASP GLU ARG LEU PRO SER VAL SEQRES 20 B 448 MET SER PHE GLN VAL GLU ASP VAL PHE PHE SER ALA ILE SEQRES 21 B 448 PHE SER VAL ALA CYS GLN VAL LEU ALA GLU ILE GLY GLU SEQRES 22 B 448 ASP TYR LYS ARG PRO HIS ALA ASP VAL LYS ASP LEU TYR SEQRES 23 B 448 LEU TRP ALA GLU ARG PHE ARG ALA GLY VAL VAL GLU THR SEQRES 24 B 448 THR ASP GLN ARG THR GLY ALA ALA ARG ASP PHE ASP VAL SEQRES 25 B 448 LEU ALA GLU LYS TRP LEU VAL THR GLU THR ALA ALA GLN SEQRES 26 B 448 PHE ALA PRO LEU LEU CYS GLY GLY LEU PRO HIS ASP ARG SEQRES 27 B 448 GLU ARG ALA LEU LEU LYS LEU LEU GLU GLY PRO ARG PHE SEQRES 28 B 448 CYS GLY HIS PRO ASP LEU LYS TYR GLY LEU ILE PRO SER SEQRES 29 B 448 THR SER PRO VAL SER ARG ASP PHE ARG PRO ARG GLU TYR SEQRES 30 B 448 TRP ARG GLY PRO VAL TRP PRO VAL LEU THR TRP LEU PHE SEQRES 31 B 448 SER TRP CYS PHE ALA ARG ARG GLY TRP ALA GLU ARG ALA SEQRES 32 B 448 ARG LEU LEU ARG GLN GLU GLY LEU ARG GLN ALA SER ASP SEQRES 33 B 448 GLY SER PHE ALA GLU TYR TYR GLU PRO PHE THR GLY GLU SEQRES 34 B 448 PRO LEU GLY SER MET GLN GLN SER TRP THR ALA ALA ALA SEQRES 35 B 448 VAL LEU ASP TRP LEU GLY HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET SER A 509 7 HET GOL B 501 6 HET GOL B 502 6 HET GOL B 503 6 HET SER B 504 7 HETNAM GOL GLYCEROL HETNAM SER SERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 11(C3 H8 O3) FORMUL 11 SER 2(C3 H7 N O3) FORMUL 16 HOH *776(H2 O) HELIX 1 AA1 THR A 8 ASN A 23 1 16 HELIX 2 AA2 SER A 41 ALA A 52 1 12 HELIX 3 AA3 SER A 55 SER A 68 1 14 HELIX 4 AA4 GLY A 91 ALA A 96 1 6 HELIX 5 AA5 ALA A 96 ALA A 101 1 6 HELIX 6 AA6 VAL A 118 ARG A 133 1 16 HELIX 7 AA7 GLY A 134 ARG A 163 1 30 HELIX 8 AA8 HIS A 175 GLY A 180 5 6 HELIX 9 AA9 SER A 184 ARG A 186 5 3 HELIX 10 AB1 TRP A 187 ALA A 192 1 6 HELIX 11 AB2 ALA A 205 ILE A 210 1 6 HELIX 12 AB3 ASP A 212 ARG A 216 5 5 HELIX 13 AB4 SER A 218 VAL A 235 1 18 HELIX 14 AB5 ARG A 241 MET A 246 1 6 HELIX 15 AB6 VAL A 253 TYR A 273 1 21 HELIX 16 AB7 PRO A 276 THR A 297 1 22 HELIX 17 AB8 THR A 320 GLN A 323 5 4 HELIX 18 AB9 PHE A 324 GLY A 330 1 7 HELIX 19 AC1 PRO A 333 GLY A 346 1 14 HELIX 20 AC2 TRP A 381 GLY A 396 1 16 HELIX 21 AC3 TRP A 397 SER A 413 1 17 HELIX 22 AC4 GLN A 434 GLY A 446 1 13 HELIX 23 AC5 THR B 8 ASN B 23 1 16 HELIX 24 AC6 SER B 41 ALA B 52 1 12 HELIX 25 AC7 SER B 55 ALA B 69 1 15 HELIX 26 AC8 GLY B 91 ALA B 96 1 6 HELIX 27 AC9 ALA B 96 ALA B 101 1 6 HELIX 28 AD1 VAL B 118 GLY B 134 1 17 HELIX 29 AD2 GLY B 134 ARG B 163 1 30 HELIX 30 AD3 HIS B 175 GLY B 180 5 6 HELIX 31 AD4 SER B 184 ARG B 186 5 3 HELIX 32 AD5 TRP B 187 ALA B 192 1 6 HELIX 33 AD6 ALA B 205 ILE B 210 1 6 HELIX 34 AD7 ASP B 212 ARG B 216 5 5 HELIX 35 AD8 SER B 218 VAL B 235 1 18 HELIX 36 AD9 ARG B 241 MET B 246 1 6 HELIX 37 AE1 VAL B 253 TYR B 273 1 21 HELIX 38 AE2 PRO B 276 THR B 297 1 22 HELIX 39 AE3 THR B 320 GLN B 323 5 4 HELIX 40 AE4 PHE B 324 GLY B 330 1 7 HELIX 41 AE5 PRO B 333 GLY B 346 1 14 HELIX 42 AE6 TRP B 381 ARG B 395 1 15 HELIX 43 AE7 TRP B 397 SER B 413 1 17 HELIX 44 AE8 GLN B 434 GLY B 446 1 13 SHEET 1 AA1 2 MET A 39 TRP A 40 0 SHEET 2 AA1 2 ILE A 79 VAL A 80 -1 O VAL A 80 N MET A 39 SHEET 1 AA2 4 ILE A 171 LEU A 173 0 SHEET 2 AA2 4 VAL A 250 ASP A 252 -1 O ASP A 252 N ILE A 171 SHEET 3 AA2 4 ASP A 307 ASP A 309 -1 O PHE A 308 N GLU A 251 SHEET 4 AA2 4 LYS A 314 LEU A 316 -1 O LEU A 316 N ASP A 307 SHEET 1 AA3 2 TYR A 420 TYR A 421 0 SHEET 2 AA3 2 PRO A 428 LEU A 429 -1 O LEU A 429 N TYR A 420 SHEET 1 AA4 2 MET B 39 TRP B 40 0 SHEET 2 AA4 2 ILE B 79 VAL B 80 -1 O VAL B 80 N MET B 39 SHEET 1 AA5 4 ILE B 171 LEU B 173 0 SHEET 2 AA5 4 VAL B 250 ASP B 252 -1 O VAL B 250 N LEU B 173 SHEET 3 AA5 4 ASP B 307 ASP B 309 -1 O PHE B 308 N GLU B 251 SHEET 4 AA5 4 LYS B 314 LEU B 316 -1 O LEU B 316 N ASP B 307 SHEET 1 AA6 2 TYR B 420 TYR B 421 0 SHEET 2 AA6 2 PRO B 428 LEU B 429 -1 O LEU B 429 N TYR B 420 CISPEP 1 PHE A 89 PRO A 90 0 8.79 CISPEP 2 PHE B 89 PRO B 90 0 5.76 SITE 1 AC1 9 TYR A 36 TRP A 40 TRP A 42 ASP A 43 SITE 2 AC1 9 GLN A 115 TYR A 375 GLN A 434 SER A 509 SITE 3 AC1 9 HOH A 652 SITE 1 AC2 9 GLU A 399 ARG A 402 HOH A 610 HOH A 726 SITE 2 AC2 9 GLN B 11 ARG B 125 HIS B 129 GLY B 446 SITE 3 AC2 9 HOH B 758 SITE 1 AC3 9 GLN A 11 ARG A 125 HIS A 129 GLY A 446 SITE 2 AC3 9 HOH A 609 HOH A 654 HOH A 733 GLU B 399 SITE 3 AC3 9 ARG B 402 SITE 1 AC4 5 MET A 153 ARG A 154 ARG A 157 ASP A 279 SITE 2 AC4 5 HOH A 757 SITE 1 AC5 6 LEU A 25 GLY A 26 THR A 27 ALA A 82 SITE 2 AC5 6 ASN A 83 ARG A 108 SITE 1 AC6 5 GLU A 296 THR A 297 THR A 298 HOH A 681 SITE 2 AC6 5 HOH A 811 SITE 1 AC7 3 GLN A 264 TYR A 284 HIS B 334 SITE 1 AC8 3 HIS A 334 HOH A 700 GLN B 264 SITE 1 AC9 11 TRP A 40 HIS A 78 TYR A 88 ARG A 216 SITE 2 AC9 11 TYR A 222 TYR A 375 GOL A 501 HOH A 601 SITE 3 AC9 11 HOH A 640 HOH A 641 HOH A 807 SITE 1 AD1 9 TYR B 36 TRP B 40 TRP B 42 ASP B 43 SITE 2 AD1 9 GLN B 115 TYR B 375 GLN B 434 SER B 504 SITE 3 AD1 9 HOH B 645 SITE 1 AD2 3 MET B 153 ARG B 157 ASP B 279 SITE 1 AD3 8 GLU B 296 THR B 297 THR B 298 GLN B 300 SITE 2 AD3 8 ARG B 306 TRP B 315 HOH B 647 HOH B 738 SITE 1 AD4 11 TRP B 40 HIS B 78 TYR B 88 ARG B 216 SITE 2 AD4 11 TYR B 222 TYR B 375 GOL B 501 HOH B 609 SITE 3 AD4 11 HOH B 617 HOH B 654 HOH B 701 CRYST1 86.286 158.046 87.654 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011408 0.00000