HEADER ANTIBIOTIC 20-JUL-17 5OJ0 TITLE PENICILLIN-BINDING PROTEIN 2X (PBP2X) FROM STREPTOCOCCUS PNEUMONIAE IN TITLE 2 COMPLEX WITH CEFEPIME COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 2X; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PBP2X; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: PBPX, SPR0304; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PENICILLIN, B-LACTAM, CELL-WALL, TRANSPEPTIDASE, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR N.BERNARDO-GARCIA,J.A.HERMOSO REVDAT 2 17-JAN-24 5OJ0 1 REMARK REVDAT 1 30-MAY-18 5OJ0 0 JRNL AUTH N.BERNARDO-GARCIA,K.V.MAHASENAN,M.T.BATUECAS,M.LEE,D.HESEK, JRNL AUTH 2 D.PETRACKOVA,L.DOUBRAVOVA,P.BRANNY,S.MOBASHERY,J.A.HERMOSO JRNL TITL ALLOSTERY, RECOGNITION OF NASCENT PEPTIDOGLYCAN, AND JRNL TITL 2 CROSS-LINKING OF THE CELL WALL BY THE ESSENTIAL JRNL TITL 3 PENICILLIN-BINDING PROTEIN 2X OF STREPTOCOCCUS PNEUMONIAE. JRNL REF ACS CHEM. BIOL. V. 13 694 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 29357220 JRNL DOI 10.1021/ACSCHEMBIO.7B00817 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1621 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2192 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1110 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.1910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.354 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.188 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5179 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4721 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7020 ; 2.013 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11026 ; 1.189 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 655 ; 8.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;41.387 ;25.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 897 ;19.850 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.192 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 796 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5775 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 957 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2629 ; 6.611 ; 6.318 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2628 ; 6.606 ; 6.317 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3281 ; 9.637 ; 9.467 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3282 ; 9.636 ; 9.468 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2550 ; 7.003 ; 6.939 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2551 ; 7.002 ; 6.941 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3738 ;10.205 ;10.200 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5677 ;13.935 ;75.507 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5678 ;13.936 ;75.533 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31872 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 39.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1K25 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3-3.0 M NACL, 0.1 M SODIUM ACETATE REMARK 280 PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.22000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.44000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 126.44000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 49 REMARK 465 THR A 50 REMARK 465 GLY A 51 REMARK 465 THR A 52 REMARK 465 ARG A 53 REMARK 465 PHE A 54 REMARK 465 GLY A 55 REMARK 465 THR A 56 REMARK 465 ASP A 57 REMARK 465 LEU A 58 REMARK 465 ALA A 59 REMARK 465 LYS A 60 REMARK 465 GLU A 61 REMARK 465 ALA A 62 REMARK 465 LYS A 63 REMARK 465 LYS A 64 REMARK 465 VAL A 65 REMARK 465 HIS A 66 REMARK 465 ILE A 233 REMARK 465 ILE A 234 REMARK 465 THR A 235 REMARK 465 TYR A 236 REMARK 465 GLU A 237 REMARK 465 LYS A 238 REMARK 465 ASP A 239 REMARK 465 ARG A 240 REMARK 465 LEU A 241 REMARK 465 GLY A 242 REMARK 465 ASN A 243 REMARK 465 ILE A 244 REMARK 465 VAL A 245 REMARK 465 PRO A 246 REMARK 465 GLY A 247 REMARK 465 THR A 248 REMARK 465 GLU A 249 REMARK 465 GLU A 556 REMARK 465 LYS A 557 REMARK 465 ASN A 558 REMARK 465 GLY A 559 REMARK 465 GLY A 560 REMARK 465 TYR A 561 REMARK 465 LEU A 562 REMARK 465 VAL A 563 REMARK 465 GLY A 564 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 81 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 70 152.75 -33.60 REMARK 500 ASP A 101 123.03 -179.06 REMARK 500 ASN A 103 -66.52 57.86 REMARK 500 LYS A 105 86.59 -164.87 REMARK 500 ALA A 107 85.88 -170.29 REMARK 500 THR A 108 -21.93 89.53 REMARK 500 ASP A 179 -153.90 -146.92 REMARK 500 PHE A 193 94.35 177.66 REMARK 500 ASN A 206 -156.17 -83.31 REMARK 500 VAL A 251 64.71 -7.50 REMARK 500 GLN A 253 88.50 120.09 REMARK 500 ALA A 312 -62.06 79.51 REMARK 500 ASP A 313 -85.63 -69.41 REMARK 500 LYS A 315 98.00 -56.45 REMARK 500 ILE A 318 -82.63 -91.35 REMARK 500 ASP A 321 55.80 71.23 REMARK 500 ASN A 351 58.15 24.42 REMARK 500 THR A 352 37.34 -141.15 REMARK 500 SER A 361 33.88 -75.18 REMARK 500 ALA A 367 -103.66 36.68 REMARK 500 ASP A 368 -71.43 -89.34 REMARK 500 LYS A 420 25.46 92.12 REMARK 500 ASN A 470 41.49 -103.32 REMARK 500 LYS A 496 133.76 -30.21 REMARK 500 SER A 531 -19.04 76.35 REMARK 500 PRO A 540 119.41 -39.66 REMARK 500 LYS A 547 89.63 -172.52 REMARK 500 ALA A 551 127.95 -176.76 REMARK 500 THR A 566 -154.47 -153.88 REMARK 500 GLU A 593 -27.98 132.34 REMARK 500 ILE A 598 68.14 16.84 REMARK 500 LYS A 615 -50.15 -12.81 REMARK 500 ASN A 735 -1.96 73.76 REMARK 500 LYS A 739 -36.50 -33.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9WT A 801 DBREF 5OJ0 A 49 750 UNP P59676 PBPX_STRR6 49 750 SEQRES 1 A 702 GLY THR GLY THR ARG PHE GLY THR ASP LEU ALA LYS GLU SEQRES 2 A 702 ALA LYS LYS VAL HIS GLN THR THR ARG THR VAL PRO ALA SEQRES 3 A 702 LYS ARG GLY THR ILE TYR ASP ARG ASN GLY VAL PRO ILE SEQRES 4 A 702 ALA GLU ASP ALA THR SER TYR ASN VAL TYR ALA VAL ILE SEQRES 5 A 702 ASP GLU ASN TYR LYS SER ALA THR GLY LYS ILE LEU TYR SEQRES 6 A 702 VAL GLU LYS THR GLN PHE ASN LYS VAL ALA GLU VAL PHE SEQRES 7 A 702 HIS LYS TYR LEU ASP MET GLU GLU SER TYR VAL ARG GLU SEQRES 8 A 702 GLN LEU SER GLN PRO ASN LEU LYS GLN VAL SER PHE GLY SEQRES 9 A 702 ALA LYS GLY ASN GLY ILE THR TYR ALA ASN MET MET SER SEQRES 10 A 702 ILE LYS LYS GLU LEU GLU ALA ALA GLU VAL LYS GLY ILE SEQRES 11 A 702 ASP PHE THR THR SER PRO ASN ARG SER TYR PRO ASN GLY SEQRES 12 A 702 GLN PHE ALA SER SER PHE ILE GLY LEU ALA GLN LEU HIS SEQRES 13 A 702 GLU ASN GLU ASP GLY SER LYS SER LEU LEU GLY THR SER SEQRES 14 A 702 GLY MET GLU SER SER LEU ASN SER ILE LEU ALA GLY THR SEQRES 15 A 702 ASP GLY ILE ILE THR TYR GLU LYS ASP ARG LEU GLY ASN SEQRES 16 A 702 ILE VAL PRO GLY THR GLU GLN VAL SER GLN ARG THR MET SEQRES 17 A 702 ASP GLY LYS ASP VAL TYR THR THR ILE SER SER PRO LEU SEQRES 18 A 702 GLN SER PHE MET GLU THR GLN MET ASP ALA PHE GLN GLU SEQRES 19 A 702 LYS VAL LYS GLY LYS TYR MET THR ALA THR LEU VAL SER SEQRES 20 A 702 ALA LYS THR GLY GLU ILE LEU ALA THR THR GLN ARG PRO SEQRES 21 A 702 THR PHE ASP ALA ASP THR LYS GLU GLY ILE THR GLU ASP SEQRES 22 A 702 PHE VAL TRP ARG ASP ILE LEU TYR GLN SER ASN TYR GLU SEQRES 23 A 702 PRO GLY SER THR MET LYS VAL MET MET LEU ALA ALA ALA SEQRES 24 A 702 ILE ASP ASN ASN THR PHE PRO GLY GLY GLU VAL PHE ASN SEQRES 25 A 702 SER SER GLU LEU LYS ILE ALA ASP ALA THR ILE ARG ASP SEQRES 26 A 702 TRP ASP VAL ASN GLU GLY LEU THR GLY GLY ARG MET MET SEQRES 27 A 702 THR PHE SER GLN GLY PHE ALA HIS SER SER ASN VAL GLY SEQRES 28 A 702 MET THR LEU LEU GLU GLN LYS MET GLY ASP ALA THR TRP SEQRES 29 A 702 LEU ASP TYR LEU ASN ARG PHE LYS PHE GLY VAL PRO THR SEQRES 30 A 702 ARG PHE GLY LEU THR ASP GLU TYR ALA GLY GLN LEU PRO SEQRES 31 A 702 ALA ASP ASN ILE VAL ASN ILE ALA GLN SER SER PHE GLY SEQRES 32 A 702 GLN GLY ILE SER VAL THR GLN THR GLN MET ILE ARG ALA SEQRES 33 A 702 PHE THR ALA ILE ALA ASN ASP GLY VAL MET LEU GLU PRO SEQRES 34 A 702 LYS PHE ILE SER ALA ILE TYR ASP PRO ASN ASP GLN THR SEQRES 35 A 702 ALA ARG LYS SER GLN LYS GLU ILE VAL GLY ASN PRO VAL SEQRES 36 A 702 SER LYS ASP ALA ALA SER LEU THR ARG THR ASN MET VAL SEQRES 37 A 702 LEU VAL GLY THR ASP PRO VAL TYR GLY THR MET TYR ASN SEQRES 38 A 702 HIS SER THR GLY LYS PRO THR VAL THR VAL PRO GLY GLN SEQRES 39 A 702 ASN VAL ALA LEU LYS SER GLY THR ALA GLN ILE ALA ASP SEQRES 40 A 702 GLU LYS ASN GLY GLY TYR LEU VAL GLY LEU THR ASP TYR SEQRES 41 A 702 ILE PHE SER ALA VAL SER MET SER PRO ALA GLU ASN PRO SEQRES 42 A 702 ASP PHE ILE LEU TYR VAL THR VAL GLN GLN PRO GLU HIS SEQRES 43 A 702 TYR SER GLY ILE GLN LEU GLY GLU PHE ALA ASN PRO ILE SEQRES 44 A 702 LEU GLU ARG ALA SER ALA MET LYS ASP SER LEU ASN LEU SEQRES 45 A 702 GLN THR THR ALA LYS ALA LEU GLU GLN VAL SER GLN GLN SEQRES 46 A 702 SER PRO TYR PRO MET PRO SER VAL LYS ASP ILE SER PRO SEQRES 47 A 702 GLY ASP LEU ALA GLU GLU LEU ARG ARG ASN LEU VAL GLN SEQRES 48 A 702 PRO ILE VAL VAL GLY THR GLY THR LYS ILE LYS ASN SER SEQRES 49 A 702 SER ALA GLU GLU GLY LYS ASN LEU ALA PRO ASN GLN GLN SEQRES 50 A 702 VAL LEU ILE LEU SER ASP LYS ALA GLU GLU VAL PRO ASP SEQRES 51 A 702 MET TYR GLY TRP THR LYS GLU THR ALA GLU THR LEU ALA SEQRES 52 A 702 LYS TRP LEU ASN ILE GLU LEU GLU PHE GLN GLY SER GLY SEQRES 53 A 702 SER THR VAL GLN LYS GLN ASP VAL ARG ALA ASN THR ALA SEQRES 54 A 702 ILE LYS ASP ILE LYS LYS ILE THR LEU THR LEU GLY ASP HET 9WT A 801 32 HETNAM 9WT CEFEPIME FORMUL 2 9WT C19 H25 N6 O5 S2 1+ FORMUL 3 HOH *147(H2 O) HELIX 1 AA1 GLU A 115 THR A 117 5 3 HELIX 2 AA2 GLN A 118 ASP A 131 1 14 HELIX 3 AA3 GLU A 133 SER A 142 1 10 HELIX 4 AA4 GLY A 152 LYS A 154 5 3 HELIX 5 AA5 THR A 159 ALA A 173 1 15 HELIX 6 AA6 ALA A 194 GLY A 199 1 6 HELIX 7 AA7 GLY A 218 LEU A 223 1 6 HELIX 8 AA8 LEU A 223 GLY A 229 1 7 HELIX 9 AA9 SER A 266 VAL A 284 1 19 HELIX 10 AB1 PRO A 335 THR A 338 5 4 HELIX 11 AB2 MET A 339 ASN A 350 1 12 HELIX 12 AB3 ASP A 373 GLU A 378 1 6 HELIX 13 AB4 PHE A 388 HIS A 394 1 7 HELIX 14 AB5 SER A 396 GLY A 408 1 13 HELIX 15 AB6 GLY A 408 PHE A 419 1 12 HELIX 16 AB7 ASN A 441 SER A 449 1 9 HELIX 17 AB8 THR A 457 ASN A 470 1 14 HELIX 18 AB9 SER A 504 ASP A 521 1 18 HELIX 19 AC1 GLN A 599 LYS A 615 1 17 HELIX 20 AC2 ASP A 616 LEU A 618 5 3 HELIX 21 AC3 ALA A 624 GLU A 628 5 5 HELIX 22 AC4 SER A 645 ARG A 655 1 11 HELIX 23 AC5 THR A 703 LEU A 714 1 12 HELIX 24 AC6 ALA A 737 ILE A 741 5 5 SHEET 1 AA1 3 GLN A 148 SER A 150 0 SHEET 2 AA1 3 PRO A 86 VAL A 99 -1 N ALA A 98 O VAL A 149 SHEET 3 AA1 3 ILE A 178 SER A 187 -1 O SER A 187 N GLU A 89 SHEET 1 AA2 6 ASN A 156 ILE A 158 0 SHEET 2 AA2 6 PRO A 86 VAL A 99 -1 N TYR A 94 O ILE A 158 SHEET 3 AA2 6 ILE A 79 TYR A 80 -1 N ILE A 79 O ILE A 87 SHEET 4 AA2 6 ASP A 260 TYR A 262 1 O VAL A 261 N TYR A 80 SHEET 5 AA2 6 ALA A 482 ASP A 485 -1 O ALA A 482 N TYR A 262 SHEET 6 AA2 6 THR A 490 LYS A 493 -1 O THR A 490 N ASP A 485 SHEET 1 AA3 2 LEU A 200 GLU A 205 0 SHEET 2 AA3 2 LYS A 211 SER A 217 -1 O SER A 212 N HIS A 204 SHEET 1 AA4 5 ILE A 301 ARG A 307 0 SHEET 2 AA4 5 TYR A 288 SER A 295 -1 N LEU A 293 O LEU A 302 SHEET 3 AA4 5 PHE A 583 GLN A 591 -1 O ILE A 584 N VAL A 294 SHEET 4 AA4 5 TYR A 568 SER A 576 -1 N PHE A 570 O VAL A 589 SHEET 5 AA4 5 ALA A 545 SER A 548 -1 N ALA A 545 O MET A 575 SHEET 1 AA5 2 VAL A 358 ASN A 360 0 SHEET 2 AA5 2 MET A 385 THR A 387 -1 O MET A 386 N PHE A 359 SHEET 1 AA6 2 LEU A 364 LYS A 365 0 SHEET 2 AA6 2 THR A 370 ILE A 371 -1 O ILE A 371 N LEU A 364 SHEET 1 AA7 2 MET A 474 LEU A 475 0 SHEET 2 AA7 2 ILE A 498 GLY A 500 -1 O VAL A 499 N MET A 474 SHEET 1 AA8 3 GLN A 659 VAL A 663 0 SHEET 2 AA8 3 GLN A 685 SER A 690 1 O ILE A 688 N ILE A 661 SHEET 3 AA8 3 ILE A 669 SER A 672 -1 N LYS A 670 O LEU A 689 SHEET 1 AA9 3 GLU A 717 GLU A 719 0 SHEET 2 AA9 3 LYS A 743 GLY A 749 1 O LEU A 746 N GLU A 719 SHEET 3 AA9 3 THR A 726 GLN A 730 -1 N GLN A 728 O THR A 747 CISPEP 1 ARG A 307 PRO A 308 0 -6.85 CISPEP 2 SER A 576 PRO A 577 0 -10.09 SITE 1 AC1 14 SER A 337 LYS A 340 ARG A 372 TRP A 374 SITE 2 AC1 14 ASN A 377 SER A 395 ASN A 397 GLN A 452 SITE 3 AC1 14 THR A 526 SER A 548 GLY A 549 THR A 550 SITE 4 AC1 14 ALA A 551 GLN A 552 CRYST1 99.547 99.547 189.660 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010045 0.005800 0.000000 0.00000 SCALE2 0.000000 0.011600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005273 0.00000