HEADER HYDROLASE 24-JUL-17 5OJV TITLE CRYSTAL STRUCTURE OF MYCOLICIBACTERIUM HASSIACUM GLUCOSYLGLYCERATE TITLE 2 HYDROLASE (MHGGH) E419A VARIANT IN COMPLEX WITH MANNOSYLGLYCERATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM HASSIACUM (STRAIN DSM 44199 / CIP SOURCE 3 105218 / JCM 12690 / 3849); SOURCE 4 ORGANISM_TAXID: 1122247; SOURCE 5 GENE: C731_0006; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYCOBACTERIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.B.CEREIJA,S.MACEDO-RIBEIRO,P.J.B.PEREIRA REVDAT 5 17-JAN-24 5OJV 1 HETSYN REVDAT 4 29-JUL-20 5OJV 1 COMPND REMARK HETNAM SITE REVDAT 4 2 1 ATOM REVDAT 3 31-JUL-19 5OJV 1 JRNL REVDAT 2 15-MAY-19 5OJV 1 TITLE JRNL REVDAT 1 08-AUG-18 5OJV 0 JRNL AUTH T.B.CEREIJA,S.ALARICO,E.C.LOURENCO,J.A.MANSO,M.R.VENTURA, JRNL AUTH 2 N.EMPADINHAS,S.MACEDO-RIBEIRO,P.J.B.PEREIRA JRNL TITL THE STRUCTURAL CHARACTERIZATION OF A GLUCOSYLGLYCERATE JRNL TITL 2 HYDROLASE PROVIDES INSIGHTS INTO THE MOLECULAR MECHANISM OF JRNL TITL 3 MYCOBACTERIAL RECOVERY FROM NITROGEN STARVATION. JRNL REF IUCRJ V. 6 572 2019 JRNL REFN ESSN 2052-2525 JRNL PMID 31316802 JRNL DOI 10.1107/S2052252519005372 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 74327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8184 - 6.1809 0.97 2831 131 0.1555 0.1659 REMARK 3 2 6.1809 - 4.9075 1.00 2735 138 0.1524 0.1902 REMARK 3 3 4.9075 - 4.2875 0.98 2668 150 0.1203 0.1539 REMARK 3 4 4.2875 - 3.8957 0.97 2642 148 0.1212 0.1502 REMARK 3 5 3.8957 - 3.6166 0.99 2654 152 0.1264 0.1559 REMARK 3 6 3.6166 - 3.4034 0.99 2653 161 0.1364 0.1620 REMARK 3 7 3.4034 - 3.2330 1.00 2658 140 0.1419 0.2068 REMARK 3 8 3.2330 - 3.0923 1.00 2692 138 0.1435 0.1728 REMARK 3 9 3.0923 - 2.9733 0.99 2651 145 0.1491 0.1984 REMARK 3 10 2.9733 - 2.8707 0.96 2571 124 0.1552 0.1904 REMARK 3 11 2.8707 - 2.7809 1.00 2651 146 0.1578 0.2336 REMARK 3 12 2.7809 - 2.7014 1.00 2654 133 0.1635 0.2049 REMARK 3 13 2.7014 - 2.6303 1.00 2636 162 0.1606 0.2171 REMARK 3 14 2.6303 - 2.5662 1.00 2634 144 0.1697 0.2219 REMARK 3 15 2.5662 - 2.5078 0.99 2630 135 0.1772 0.2272 REMARK 3 16 2.5078 - 2.4545 0.99 2640 125 0.1804 0.2352 REMARK 3 17 2.4545 - 2.4054 0.99 2657 142 0.1929 0.2574 REMARK 3 18 2.4054 - 2.3600 0.99 2590 143 0.1827 0.2447 REMARK 3 19 2.3600 - 2.3178 0.99 2650 141 0.1977 0.2385 REMARK 3 20 2.3178 - 2.2785 0.97 2588 124 0.1963 0.2217 REMARK 3 21 2.2785 - 2.2418 0.97 2571 122 0.2150 0.2764 REMARK 3 22 2.2418 - 2.2073 0.99 2581 138 0.2218 0.3189 REMARK 3 23 2.2073 - 2.1748 0.99 2611 139 0.2319 0.2888 REMARK 3 24 2.1748 - 2.1442 0.99 2579 162 0.2507 0.2965 REMARK 3 25 2.1442 - 2.1152 0.99 2664 121 0.2598 0.3470 REMARK 3 26 2.1152 - 2.0877 0.98 2569 118 0.2675 0.3269 REMARK 3 27 2.0877 - 2.0617 0.73 1934 111 0.3092 0.3059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7601 REMARK 3 ANGLE : 0.985 10369 REMARK 3 CHIRALITY : 0.058 1073 REMARK 3 PLANARITY : 0.007 1356 REMARK 3 DIHEDRAL : 17.206 4466 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0154 9.0506 37.3154 REMARK 3 T TENSOR REMARK 3 T11: 0.2421 T22: 0.2038 REMARK 3 T33: 0.2473 T12: 0.0125 REMARK 3 T13: -0.0001 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.7450 L22: 5.5639 REMARK 3 L33: 4.0452 L12: 0.8252 REMARK 3 L13: 0.2916 L23: -2.6519 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: 0.0934 S13: -0.0471 REMARK 3 S21: -0.3636 S22: 0.0525 S23: 0.2461 REMARK 3 S31: 0.1009 S32: -0.1375 S33: -0.0584 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0505 21.3400 28.5052 REMARK 3 T TENSOR REMARK 3 T11: 0.3718 T22: 0.1992 REMARK 3 T33: 0.2461 T12: -0.0091 REMARK 3 T13: 0.0254 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 4.6889 L22: 2.5634 REMARK 3 L33: 6.1098 L12: -1.9406 REMARK 3 L13: 3.1395 L23: -1.9048 REMARK 3 S TENSOR REMARK 3 S11: 0.1320 S12: 0.3640 S13: -0.0873 REMARK 3 S21: -0.5756 S22: -0.0510 S23: 0.0190 REMARK 3 S31: -0.0321 S32: -0.0315 S33: -0.0886 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5504 29.4780 35.1567 REMARK 3 T TENSOR REMARK 3 T11: 0.3642 T22: 0.2428 REMARK 3 T33: 0.1696 T12: -0.0101 REMARK 3 T13: 0.0126 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 5.2453 L22: 4.0793 REMARK 3 L33: 1.2814 L12: -2.6762 REMARK 3 L13: -0.2774 L23: 0.1584 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.2753 S13: 0.3033 REMARK 3 S21: -0.3288 S22: -0.0338 S23: -0.1483 REMARK 3 S31: -0.3249 S32: 0.1188 S33: -0.0014 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8006 30.5392 24.8223 REMARK 3 T TENSOR REMARK 3 T11: 0.4654 T22: 0.3712 REMARK 3 T33: 0.3762 T12: 0.1002 REMARK 3 T13: -0.1340 T23: 0.0463 REMARK 3 L TENSOR REMARK 3 L11: 1.4729 L22: 4.8437 REMARK 3 L33: 4.2809 L12: 0.8116 REMARK 3 L13: -0.8980 L23: -2.3720 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: 0.3100 S13: 0.2706 REMARK 3 S21: -0.6271 S22: 0.0679 S23: 0.4441 REMARK 3 S31: -0.2222 S32: -0.3773 S33: -0.0764 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6669 35.2718 44.2790 REMARK 3 T TENSOR REMARK 3 T11: 0.3782 T22: 0.1768 REMARK 3 T33: 0.2484 T12: -0.0129 REMARK 3 T13: 0.0028 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 8.3134 L22: 2.9578 REMARK 3 L33: 1.5241 L12: -2.9777 REMARK 3 L13: -0.4225 L23: 0.9153 REMARK 3 S TENSOR REMARK 3 S11: -0.0970 S12: -0.2466 S13: 0.3243 REMARK 3 S21: 0.0262 S22: 0.0590 S23: 0.0317 REMARK 3 S31: -0.3858 S32: 0.0724 S33: 0.0389 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1244 21.4393 50.8688 REMARK 3 T TENSOR REMARK 3 T11: 0.2097 T22: 0.2340 REMARK 3 T33: 0.2920 T12: 0.0311 REMARK 3 T13: 0.0361 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 1.9810 L22: 2.0776 REMARK 3 L33: 1.6848 L12: 0.1535 REMARK 3 L13: 0.5179 L23: 0.2187 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: -0.0823 S13: 0.0801 REMARK 3 S21: 0.0761 S22: 0.0156 S23: 0.3947 REMARK 3 S31: -0.1011 S32: -0.2100 S33: 0.0203 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.1110 6.7726 80.4099 REMARK 3 T TENSOR REMARK 3 T11: 0.2623 T22: 0.3009 REMARK 3 T33: 0.2722 T12: -0.0744 REMARK 3 T13: 0.0075 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 1.6122 L22: 4.7399 REMARK 3 L33: 5.5535 L12: 2.1690 REMARK 3 L13: 1.8161 L23: 1.8295 REMARK 3 S TENSOR REMARK 3 S11: 0.2991 S12: -0.2891 S13: -0.1869 REMARK 3 S21: 0.5675 S22: -0.2216 S23: -0.1975 REMARK 3 S31: 0.2480 S32: 0.0011 S33: -0.0745 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.2218 18.9856 88.8886 REMARK 3 T TENSOR REMARK 3 T11: 0.4299 T22: 0.4709 REMARK 3 T33: 0.2738 T12: -0.1763 REMARK 3 T13: 0.0256 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 3.5211 L22: 1.2833 REMARK 3 L33: 5.0313 L12: -0.0198 REMARK 3 L13: 2.1965 L23: 0.0452 REMARK 3 S TENSOR REMARK 3 S11: 0.2869 S12: -0.7559 S13: -0.0442 REMARK 3 S21: 0.4757 S22: -0.2396 S23: -0.0894 REMARK 3 S31: -0.0599 S32: 0.0179 S33: -0.0515 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.3897 26.0417 82.3727 REMARK 3 T TENSOR REMARK 3 T11: 0.4366 T22: 0.3761 REMARK 3 T33: 0.1959 T12: -0.1151 REMARK 3 T13: 0.0067 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 6.4472 L22: 2.1064 REMARK 3 L33: 1.7172 L12: 0.6481 REMARK 3 L13: -0.3709 L23: 0.1135 REMARK 3 S TENSOR REMARK 3 S11: 0.2101 S12: -0.5576 S13: 0.2413 REMARK 3 S21: 0.4042 S22: -0.2066 S23: -0.0622 REMARK 3 S31: -0.3902 S32: 0.0909 S33: 0.0020 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.0097 16.6290 92.7377 REMARK 3 T TENSOR REMARK 3 T11: 0.5449 T22: 0.8488 REMARK 3 T33: 0.5423 T12: -0.2218 REMARK 3 T13: -0.2005 T23: 0.1603 REMARK 3 L TENSOR REMARK 3 L11: 1.3192 L22: 3.3768 REMARK 3 L33: 4.2886 L12: 1.4730 REMARK 3 L13: 1.2409 L23: 1.9698 REMARK 3 S TENSOR REMARK 3 S11: 0.3721 S12: -0.5468 S13: -0.2957 REMARK 3 S21: 0.7139 S22: -0.3465 S23: -0.5390 REMARK 3 S31: 0.0682 S32: 0.4563 S33: -0.0678 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 250 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.8632 31.0113 73.3279 REMARK 3 T TENSOR REMARK 3 T11: 0.4047 T22: 0.2698 REMARK 3 T33: 0.2454 T12: -0.1144 REMARK 3 T13: -0.0102 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 4.8244 L22: 1.8700 REMARK 3 L33: 1.9414 L12: -0.3240 REMARK 3 L13: -0.9654 L23: -0.2717 REMARK 3 S TENSOR REMARK 3 S11: 0.2596 S12: -0.1388 S13: 0.2427 REMARK 3 S21: 0.1856 S22: -0.2268 S23: -0.1693 REMARK 3 S31: -0.4360 S32: 0.1948 S33: -0.0197 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 321 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.0878 11.8483 66.8824 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.2602 REMARK 3 T33: 0.3179 T12: -0.0250 REMARK 3 T13: -0.0120 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.7826 L22: 2.7538 REMARK 3 L33: 2.3596 L12: 0.5147 REMARK 3 L13: 0.0028 L23: -0.8344 REMARK 3 S TENSOR REMARK 3 S11: 0.0685 S12: -0.0749 S13: -0.2816 REMARK 3 S21: 0.0224 S22: -0.1397 S23: -0.3710 REMARK 3 S31: 0.0524 S32: 0.2118 S33: 0.0642 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74395 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 48.805 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.97900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-BICINE PH 8.5, AMINO ACIDS, PEG REMARK 280 4000, GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.89600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.12100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.89600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.12100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 87.79200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 627 O HOH A 840 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 37 32.87 -83.95 REMARK 500 SER A 55 108.47 -160.43 REMARK 500 THR A 114 -167.27 -110.82 REMARK 500 MET A 181 75.74 -115.93 REMARK 500 GLU A 319 73.32 -107.20 REMARK 500 PHE A 349 -104.80 -136.70 REMARK 500 TYR A 375 -108.38 66.67 REMARK 500 PRO B 37 36.50 -81.23 REMARK 500 SER B 55 107.21 -163.28 REMARK 500 ASP B 86 -162.82 -115.54 REMARK 500 MET B 181 76.63 -113.20 REMARK 500 GLU B 319 70.64 -111.89 REMARK 500 PHE B 349 -110.90 -134.23 REMARK 500 TYR B 375 -107.80 69.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 810 DISTANCE = 5.93 ANGSTROMS DBREF 5OJV A 1 446 UNP K5BDL0 K5BDL0_MYCHD 1 446 DBREF 5OJV B 1 446 UNP K5BDL0 K5BDL0_MYCHD 1 446 SEQADV 5OJV GLY A -1 UNP K5BDL0 EXPRESSION TAG SEQADV 5OJV ALA A 0 UNP K5BDL0 EXPRESSION TAG SEQADV 5OJV ALA A 419 UNP K5BDL0 GLU 419 ENGINEERED MUTATION SEQADV 5OJV GLY B -1 UNP K5BDL0 EXPRESSION TAG SEQADV 5OJV ALA B 0 UNP K5BDL0 EXPRESSION TAG SEQADV 5OJV ALA B 419 UNP K5BDL0 GLU 419 ENGINEERED MUTATION SEQRES 1 A 448 GLY ALA MET PRO HIS ASP PRO SER PHE THR PRO THR GLN SEQRES 2 A 448 LEU ALA ALA ARG ALA ALA TYR LEU LEU ARG GLY ASN ASP SEQRES 3 A 448 LEU GLY THR MET THR THR ALA ALA PRO LEU LEU TYR PRO SEQRES 4 A 448 HIS MET TRP SER TRP ASP ALA ALA PHE VAL ALA ILE GLY SEQRES 5 A 448 LEU ALA PRO LEU SER VAL GLU ARG ALA VAL VAL GLU LEU SEQRES 6 A 448 ASP THR LEU LEU SER ALA GLN TRP ARG ASN GLY MET ILE SEQRES 7 A 448 PRO HIS ILE VAL PHE ALA ASN GLY VAL ASP GLY TYR PHE SEQRES 8 A 448 PRO GLY PRO ALA ARG TRP ALA THR ALA THR LEU ALA ASP SEQRES 9 A 448 ASN ALA PRO ARG ASN ARG LEU THR SER GLY ILE THR GLN SEQRES 10 A 448 PRO PRO VAL HIS ALA ILE ALA VAL GLN ARG ILE LEU GLU SEQRES 11 A 448 HIS ALA ARG THR ARG GLY ARG SER THR ARG ALA VAL ALA SEQRES 12 A 448 GLU ALA PHE LEU ASP ARG ARG TRP GLY ASP LEU MET ARG SEQRES 13 A 448 TRP HIS ARG TRP LEU ALA GLU CYS ARG ASP ARG ASN GLU SEQRES 14 A 448 ARG GLY ARG ILE THR LEU TYR HIS GLY TRP GLU SER GLY SEQRES 15 A 448 MET ASP ASN SER PRO ARG TRP ASP SER ALA TYR ALA ASN SEQRES 16 A 448 VAL VAL PRO GLY LYS LEU PRO GLU TYR GLN ARG ALA ASP SEQRES 17 A 448 ASN VAL ILE ILE THR ASP PRO SER GLN ARG PRO SER ASP SEQRES 18 A 448 GLY GLU TYR ASP ARG TYR LEU TRP LEU LEU GLU GLU MET SEQRES 19 A 448 LYS ALA VAL ARG TYR ASP ASP GLU ARG LEU PRO SER VAL SEQRES 20 A 448 MET SER PHE GLN VAL GLU ASP VAL PHE PHE SER ALA ILE SEQRES 21 A 448 PHE SER VAL ALA CYS GLN VAL LEU ALA GLU ILE GLY GLU SEQRES 22 A 448 ASP TYR LYS ARG PRO HIS ALA ASP VAL LYS ASP LEU TYR SEQRES 23 A 448 LEU TRP ALA GLU ARG PHE ARG ALA GLY VAL VAL GLU THR SEQRES 24 A 448 THR ASP GLN ARG THR GLY ALA ALA ARG ASP PHE ASP VAL SEQRES 25 A 448 LEU ALA GLU LYS TRP LEU VAL THR GLU THR ALA ALA GLN SEQRES 26 A 448 PHE ALA PRO LEU LEU CYS GLY GLY LEU PRO HIS ASP ARG SEQRES 27 A 448 GLU ARG ALA LEU LEU LYS LEU LEU GLU GLY PRO ARG PHE SEQRES 28 A 448 CYS GLY HIS PRO ASP LEU LYS TYR GLY LEU ILE PRO SER SEQRES 29 A 448 THR SER PRO VAL SER ARG ASP PHE ARG PRO ARG GLU TYR SEQRES 30 A 448 TRP ARG GLY PRO VAL TRP PRO VAL LEU THR TRP LEU PHE SEQRES 31 A 448 SER TRP CYS PHE ALA ARG ARG GLY TRP ALA GLU ARG ALA SEQRES 32 A 448 ARG LEU LEU ARG GLN GLU GLY LEU ARG GLN ALA SER ASP SEQRES 33 A 448 GLY SER PHE ALA ALA TYR TYR GLU PRO PHE THR GLY GLU SEQRES 34 A 448 PRO LEU GLY SER MET GLN GLN SER TRP THR ALA ALA ALA SEQRES 35 A 448 VAL LEU ASP TRP LEU GLY SEQRES 1 B 448 GLY ALA MET PRO HIS ASP PRO SER PHE THR PRO THR GLN SEQRES 2 B 448 LEU ALA ALA ARG ALA ALA TYR LEU LEU ARG GLY ASN ASP SEQRES 3 B 448 LEU GLY THR MET THR THR ALA ALA PRO LEU LEU TYR PRO SEQRES 4 B 448 HIS MET TRP SER TRP ASP ALA ALA PHE VAL ALA ILE GLY SEQRES 5 B 448 LEU ALA PRO LEU SER VAL GLU ARG ALA VAL VAL GLU LEU SEQRES 6 B 448 ASP THR LEU LEU SER ALA GLN TRP ARG ASN GLY MET ILE SEQRES 7 B 448 PRO HIS ILE VAL PHE ALA ASN GLY VAL ASP GLY TYR PHE SEQRES 8 B 448 PRO GLY PRO ALA ARG TRP ALA THR ALA THR LEU ALA ASP SEQRES 9 B 448 ASN ALA PRO ARG ASN ARG LEU THR SER GLY ILE THR GLN SEQRES 10 B 448 PRO PRO VAL HIS ALA ILE ALA VAL GLN ARG ILE LEU GLU SEQRES 11 B 448 HIS ALA ARG THR ARG GLY ARG SER THR ARG ALA VAL ALA SEQRES 12 B 448 GLU ALA PHE LEU ASP ARG ARG TRP GLY ASP LEU MET ARG SEQRES 13 B 448 TRP HIS ARG TRP LEU ALA GLU CYS ARG ASP ARG ASN GLU SEQRES 14 B 448 ARG GLY ARG ILE THR LEU TYR HIS GLY TRP GLU SER GLY SEQRES 15 B 448 MET ASP ASN SER PRO ARG TRP ASP SER ALA TYR ALA ASN SEQRES 16 B 448 VAL VAL PRO GLY LYS LEU PRO GLU TYR GLN ARG ALA ASP SEQRES 17 B 448 ASN VAL ILE ILE THR ASP PRO SER GLN ARG PRO SER ASP SEQRES 18 B 448 GLY GLU TYR ASP ARG TYR LEU TRP LEU LEU GLU GLU MET SEQRES 19 B 448 LYS ALA VAL ARG TYR ASP ASP GLU ARG LEU PRO SER VAL SEQRES 20 B 448 MET SER PHE GLN VAL GLU ASP VAL PHE PHE SER ALA ILE SEQRES 21 B 448 PHE SER VAL ALA CYS GLN VAL LEU ALA GLU ILE GLY GLU SEQRES 22 B 448 ASP TYR LYS ARG PRO HIS ALA ASP VAL LYS ASP LEU TYR SEQRES 23 B 448 LEU TRP ALA GLU ARG PHE ARG ALA GLY VAL VAL GLU THR SEQRES 24 B 448 THR ASP GLN ARG THR GLY ALA ALA ARG ASP PHE ASP VAL SEQRES 25 B 448 LEU ALA GLU LYS TRP LEU VAL THR GLU THR ALA ALA GLN SEQRES 26 B 448 PHE ALA PRO LEU LEU CYS GLY GLY LEU PRO HIS ASP ARG SEQRES 27 B 448 GLU ARG ALA LEU LEU LYS LEU LEU GLU GLY PRO ARG PHE SEQRES 28 B 448 CYS GLY HIS PRO ASP LEU LYS TYR GLY LEU ILE PRO SER SEQRES 29 B 448 THR SER PRO VAL SER ARG ASP PHE ARG PRO ARG GLU TYR SEQRES 30 B 448 TRP ARG GLY PRO VAL TRP PRO VAL LEU THR TRP LEU PHE SEQRES 31 B 448 SER TRP CYS PHE ALA ARG ARG GLY TRP ALA GLU ARG ALA SEQRES 32 B 448 ARG LEU LEU ARG GLN GLU GLY LEU ARG GLN ALA SER ASP SEQRES 33 B 448 GLY SER PHE ALA ALA TYR TYR GLU PRO PHE THR GLY GLU SEQRES 34 B 448 PRO LEU GLY SER MET GLN GLN SER TRP THR ALA ALA ALA SEQRES 35 B 448 VAL LEU ASP TRP LEU GLY HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET 2M8 A 508 18 HET SER A 509 7 HET GOL B 501 6 HET GOL B 502 6 HET 2M8 B 503 18 HETNAM GOL GLYCEROL HETNAM 2M8 (2R)-3-HYDROXY-2-(ALPHA-D-MANNOPYRANOSYLOXY)PROPANOIC HETNAM 2 2M8 ACID HETNAM SER SERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 2M8 2-O-ALPHA-MANNOSYL-D-GLYCERATE; (2R)-3-HYDROXY-2- HETSYN 2 2M8 (ALPHA-D-MANNOSYLOXY)PROPANOIC ACID; (2R)-3-HYDROXY-2- HETSYN 3 2M8 (D-MANNOSYLOXY)PROPANOIC ACID; (2R)-3-HYDROXY-2- HETSYN 4 2M8 (MANNOSYLOXY)PROPANOIC ACID FORMUL 3 GOL 9(C3 H8 O3) FORMUL 10 2M8 2(C9 H16 O9) FORMUL 11 SER C3 H7 N O3 FORMUL 15 HOH *463(H2 O) HELIX 1 AA1 THR A 8 ASN A 23 1 16 HELIX 2 AA2 SER A 41 ALA A 52 1 12 HELIX 3 AA3 SER A 55 SER A 68 1 14 HELIX 4 AA4 GLY A 91 ALA A 96 1 6 HELIX 5 AA5 ALA A 96 ALA A 101 1 6 HELIX 6 AA6 VAL A 118 GLY A 134 1 17 HELIX 7 AA7 GLY A 134 ARG A 163 1 30 HELIX 8 AA8 HIS A 175 GLY A 180 5 6 HELIX 9 AA9 SER A 184 ARG A 186 5 3 HELIX 10 AB1 TRP A 187 ALA A 192 1 6 HELIX 11 AB2 ALA A 205 ILE A 210 1 6 HELIX 12 AB3 ASP A 212 ARG A 216 5 5 HELIX 13 AB4 SER A 218 ALA A 234 1 17 HELIX 14 AB5 ARG A 241 MET A 246 1 6 HELIX 15 AB6 VAL A 253 TYR A 273 1 21 HELIX 16 AB7 PRO A 276 THR A 297 1 22 HELIX 17 AB8 THR A 320 GLN A 323 5 4 HELIX 18 AB9 PHE A 324 GLY A 330 1 7 HELIX 19 AC1 PRO A 333 GLY A 346 1 14 HELIX 20 AC2 TRP A 381 ARG A 395 1 15 HELIX 21 AC3 TRP A 397 SER A 413 1 17 HELIX 22 AC4 GLN A 434 GLY A 446 1 13 HELIX 23 AC5 THR B 8 ASN B 23 1 16 HELIX 24 AC6 SER B 41 ALA B 52 1 12 HELIX 25 AC7 SER B 55 SER B 68 1 14 HELIX 26 AC8 GLY B 91 ALA B 96 1 6 HELIX 27 AC9 ALA B 96 ALA B 101 1 6 HELIX 28 AD1 VAL B 118 THR B 132 1 15 HELIX 29 AD2 GLY B 134 ARG B 163 1 30 HELIX 30 AD3 HIS B 175 GLY B 180 5 6 HELIX 31 AD4 SER B 184 ARG B 186 5 3 HELIX 32 AD5 TRP B 187 ALA B 192 1 6 HELIX 33 AD6 ALA B 205 ILE B 210 1 6 HELIX 34 AD7 ASP B 212 ARG B 216 5 5 HELIX 35 AD8 SER B 218 VAL B 235 1 18 HELIX 36 AD9 ASP B 238 GLU B 240 5 3 HELIX 37 AE1 ARG B 241 MET B 246 1 6 HELIX 38 AE2 VAL B 253 TYR B 273 1 21 HELIX 39 AE3 PRO B 276 THR B 297 1 22 HELIX 40 AE4 THR B 320 GLN B 323 5 4 HELIX 41 AE5 PHE B 324 GLY B 330 1 7 HELIX 42 AE6 PRO B 333 GLY B 346 1 14 HELIX 43 AE7 TRP B 381 ARG B 395 1 15 HELIX 44 AE8 TRP B 397 SER B 413 1 17 HELIX 45 AE9 GLN B 434 GLY B 446 1 13 SHEET 1 AA1 2 MET A 39 TRP A 40 0 SHEET 2 AA1 2 ILE A 79 VAL A 80 -1 O VAL A 80 N MET A 39 SHEET 1 AA2 4 ILE A 171 LEU A 173 0 SHEET 2 AA2 4 VAL A 250 ASP A 252 -1 O VAL A 250 N LEU A 173 SHEET 3 AA2 4 ASP A 307 ASP A 309 -1 O PHE A 308 N GLU A 251 SHEET 4 AA2 4 LYS A 314 LEU A 316 -1 O LEU A 316 N ASP A 307 SHEET 1 AA3 2 TYR A 420 TYR A 421 0 SHEET 2 AA3 2 PRO A 428 LEU A 429 -1 O LEU A 429 N TYR A 420 SHEET 1 AA4 2 MET B 39 TRP B 40 0 SHEET 2 AA4 2 ILE B 79 VAL B 80 -1 O VAL B 80 N MET B 39 SHEET 1 AA5 4 ILE B 171 LEU B 173 0 SHEET 2 AA5 4 VAL B 250 ASP B 252 -1 O VAL B 250 N LEU B 173 SHEET 3 AA5 4 ASP B 307 ASP B 309 -1 O PHE B 308 N GLU B 251 SHEET 4 AA5 4 LYS B 314 LEU B 316 -1 O LEU B 316 N ASP B 307 SHEET 1 AA6 2 TYR B 420 TYR B 421 0 SHEET 2 AA6 2 PRO B 428 LEU B 429 -1 O LEU B 429 N TYR B 420 CISPEP 1 PHE A 89 PRO A 90 0 7.24 CISPEP 2 PHE B 89 PRO B 90 0 0.29 CRYST1 87.792 158.242 87.589 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011417 0.00000