HEADER TRANSCRIPTION 24-JUL-17 5OJY TITLE CO-COMPLEX STRUCTURE OF REGULATOR PROTEIN 2 (PAMR2) WITH PAMAMYCIN 607 TITLE 2 FROM STREPTOMYCES ALBONIGER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETR FAMILY TRANSCRIPTION REGULATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAMAMYCIN REGULATOR PROTEIN 2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ALBONIGER; SOURCE 3 ORGANISM_TAXID: 132473; SOURCE 4 GENE: PAMR2, SALB_00464; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION REGULATOR, TETR FAMILY TRANSCRIPTION REGULATOR, KEYWDS 2 STREPTOMYCES ALBONIGER, REGULATOR PROTEIN 2, PAMAMYCIN BIOSYNTHESIS, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHMELZ,Y.REBETS,A.LUZHETSKYY,A.SCRIMA REVDAT 3 17-JAN-24 5OJY 1 LINK REVDAT 2 25-APR-18 5OJY 1 JRNL REVDAT 1 11-APR-18 5OJY 0 JRNL AUTH Y.REBETS,S.SCHMELZ,O.GROMYKO,S.TISTECHOK,L.PETZKE,A.SCRIMA, JRNL AUTH 2 A.LUZHETSKYY JRNL TITL DESIGN, DEVELOPMENT AND APPLICATION OF WHOLE-CELL BASED JRNL TITL 2 ANTIBIOTIC-SPECIFIC BIOSENSOR. JRNL REF METAB. ENG. V. 47 263 2018 JRNL REFN ISSN 1096-7184 JRNL PMID 29609044 JRNL DOI 10.1016/J.YMBEN.2018.03.019 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7153 - 4.3515 1.00 2818 149 0.1755 0.1675 REMARK 3 2 4.3515 - 3.4542 1.00 2665 140 0.1528 0.1579 REMARK 3 3 3.4542 - 3.0177 1.00 2622 138 0.1883 0.2185 REMARK 3 4 3.0177 - 2.7418 1.00 2602 137 0.1865 0.2234 REMARK 3 5 2.7418 - 2.5453 1.00 2574 136 0.1872 0.2082 REMARK 3 6 2.5453 - 2.3952 1.00 2561 134 0.1778 0.1731 REMARK 3 7 2.3952 - 2.2753 1.00 2582 136 0.1825 0.2066 REMARK 3 8 2.2753 - 2.1762 1.00 2542 134 0.1870 0.2333 REMARK 3 9 2.1762 - 2.0925 1.00 2552 134 0.1964 0.2477 REMARK 3 10 2.0925 - 2.0203 1.00 2549 135 0.2231 0.2436 REMARK 3 11 2.0203 - 1.9571 1.00 2531 133 0.2331 0.2740 REMARK 3 12 1.9571 - 1.9011 1.00 2565 135 0.2527 0.2838 REMARK 3 13 1.9011 - 1.8511 1.00 2507 132 0.2958 0.3524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1829 REMARK 3 ANGLE : 1.083 2487 REMARK 3 CHIRALITY : 0.051 273 REMARK 3 PLANARITY : 0.007 318 REMARK 3 DIHEDRAL : 15.520 1073 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35445 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 46.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 21.70 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 22.16 REMARK 200 R MERGE FOR SHELL (I) : 1.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 5OJX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES PH 8.8, 0.7 M TRI-SODIUM REMARK 280 CITRATE, 0.14M TRI-LITHIUM CITRATE WITH 5MG/ML-1 PROTEIN REMARK 280 (PREINCUBATED WITH 0.5 MM PAM607 (1:1 DISOLVED IN DMSO:METOH), REMARK 280 10MIN ON ICE), VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.53333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.76667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.53333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.76667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.53333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 39.76667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 79.53333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.76667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 53.92500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -93.40084 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 OE2 GLU A 123 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 422 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 ARG A 7 REMARK 465 GLU A 8 REMARK 465 ASN A 9 REMARK 465 THR A 10 REMARK 465 PRO A 11 REMARK 465 LYS A 12 REMARK 465 GLY A 13 REMARK 465 GLN A 25 REMARK 465 ARG A 26 REMARK 465 PRO A 27 REMARK 465 GLN A 239 REMARK 465 MET A 240 REMARK 465 ARG A 241 REMARK 465 SER A 242 REMARK 465 GLN A 243 REMARK 465 ASP A 244 REMARK 465 SER A 245 REMARK 465 LEU A 246 REMARK 465 GLU A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 51 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 92 O HOH A 401 1.93 REMARK 500 O HOH A 468 O HOH A 533 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLU A 123 OE2 GLU A 123 4545 1.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 23 57.28 -97.02 REMARK 500 THR A 97 -8.87 -59.59 REMARK 500 HIS A 150 30.12 70.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9XB A 304 DBREF1 5OJY A 2 245 UNP A0A0D3RJT7_STRAD DBREF2 5OJY A A0A0D3RJT7 2 245 SEQADV 5OJY MET A 0 UNP A0A0D3RJT INITIATING METHIONINE SEQADV 5OJY VAL A 1 UNP A0A0D3RJT CLONING ARTIFACT SEQADV 5OJY LEU A 246 UNP A0A0D3RJT EXPRESSION TAG SEQADV 5OJY GLU A 247 UNP A0A0D3RJT EXPRESSION TAG SEQADV 5OJY HIS A 248 UNP A0A0D3RJT EXPRESSION TAG SEQADV 5OJY HIS A 249 UNP A0A0D3RJT EXPRESSION TAG SEQADV 5OJY HIS A 250 UNP A0A0D3RJT EXPRESSION TAG SEQADV 5OJY HIS A 251 UNP A0A0D3RJT EXPRESSION TAG SEQADV 5OJY HIS A 252 UNP A0A0D3RJT EXPRESSION TAG SEQADV 5OJY HIS A 253 UNP A0A0D3RJT EXPRESSION TAG SEQRES 1 A 254 MET VAL ASN GLU THR SER GLY ARG GLU ASN THR PRO LYS SEQRES 2 A 254 GLY GLN PRO GLY SER ILE TRP LEU ARG GLU VAL LYS GLN SEQRES 3 A 254 ARG PRO ALA ARG GLN PRO LEU SER ARG GLU GLN ILE VAL SEQRES 4 A 254 GLN ALA ALA VAL ARG LEU LEU ASP GLU GLY GLY VAL ARG SEQRES 5 A 254 ASN LEU ARG MET ARG GLN LEU ALA ASP SER LEU ASN SER SEQRES 6 A 254 ALA PRO MET SER LEU TYR TRP HIS VAL SER THR LYS ASP SEQRES 7 A 254 ASP LEU LEU GLU LEU ALA ILE ASP ALA VAL PHE PRO ASP SEQRES 8 A 254 PRO PRO SER ARG SER GLY THR GLY ASP TRP ARG ASP ASP SEQRES 9 A 254 ILE LYS ALA GLY ALA THR ASP LEU PHE GLU VAL LEU LEU SEQRES 10 A 254 ARG HIS SER TRP MET ILE GLU LEU MET GLY GLY HIS PRO SEQRES 11 A 254 PRO VAL GLY PRO ARG ALA LEU ALA HIS THR SER ALA ILE SEQRES 12 A 254 ILE GLU ILE LEU GLU GLN ALA HIS PHE SER PRO ARG GLN SEQRES 13 A 254 LEU ASP SER ALA LEU SER ALA ILE TYR TYR TYR THR VAL SEQRES 14 A 254 GLY ALA ALA LEU SER GLU ALA SER TRP GLN ALA MET ALA SEQRES 15 A 254 ARG GLN SER ALA GLU SER GLU GLU GLU TRP VAL SER ARG SEQRES 16 A 254 LEU GLY PRO TYR LEU GLY MET ALA THR GLN SER HIS PRO SEQRES 17 A 254 ALA SER LEU ALA ASP TYR VAL LYS ARG SER ALA SER SER SEQRES 18 A 254 SER THR GLY GLN ARG PHE HIS ASP GLY LEU GLU CSS MET SEQRES 19 A 254 VAL SER GLY MET GLY GLN MET ARG SER GLN ASP SER LEU SEQRES 20 A 254 GLU HIS HIS HIS HIS HIS HIS MODRES 5OJY CSS A 232 CYS MODIFIED RESIDUE HET CSS A 232 12 HET GOL A 301 14 HET GOL A 302 14 HET CIT A 303 18 HET 9XB A 304 104 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM GOL GLYCEROL HETNAM CIT CITRIC ACID HETNAM 9XB PAMAMYCIN 607 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 CIT C6 H8 O7 FORMUL 5 9XB C35 H61 N O7 FORMUL 6 HOH *144(H2 O) HELIX 1 AA1 GLY A 16 ARG A 21 1 6 HELIX 2 AA2 GLU A 22 LYS A 24 5 3 HELIX 3 AA3 SER A 33 GLY A 49 1 17 HELIX 4 AA4 VAL A 50 LEU A 53 5 4 HELIX 5 AA5 ARG A 54 LEU A 62 1 9 HELIX 6 AA6 ALA A 65 TRP A 71 1 7 HELIX 7 AA7 THR A 75 PHE A 88 1 14 HELIX 8 AA8 ASP A 99 HIS A 118 1 20 HELIX 9 AA9 TRP A 120 MET A 125 1 6 HELIX 10 AB1 GLY A 132 GLN A 148 1 17 HELIX 11 AB2 SER A 152 ALA A 185 1 34 HELIX 12 AB3 SER A 187 THR A 203 1 17 HELIX 13 AB4 GLN A 204 HIS A 206 5 3 HELIX 14 AB5 PRO A 207 ALA A 218 1 12 HELIX 15 AB6 SER A 221 GLY A 236 1 16 LINK C GLU A 231 N CSS A 232 1555 1555 1.33 LINK C CSS A 232 N MET A 233 1555 1555 1.32 SITE 1 AC1 6 ARG A 34 GLU A 35 VAL A 38 HOH A 448 SITE 2 AC1 6 HOH A 498 HOH A 499 SITE 1 AC2 4 GLU A 123 LEU A 172 SER A 176 HOH A 433 SITE 1 AC3 6 ARG A 54 MET A 55 ARG A 56 TYR A 70 SITE 2 AC3 6 THR A 75 LYS A 76 SITE 1 AC4 17 MET A 125 GLY A 126 PRO A 130 LEU A 136 SITE 2 AC4 17 THR A 139 LEU A 160 SER A 161 TYR A 165 SITE 3 AC4 17 SER A 173 GLU A 174 TRP A 177 TRP A 191 SITE 4 AC4 17 LEU A 210 TYR A 213 VAL A 214 ARG A 225 SITE 5 AC4 17 HOH A 493 CRYST1 107.850 107.850 119.300 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009272 0.005353 0.000000 0.00000 SCALE2 0.000000 0.010707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008382 0.00000