HEADER ISOMERASE 25-JUL-17 5OK2 TITLE STRUCTURE OF THE D10N MUTANT OF BETA-PHOSPHOGLUCOMUTASE FROM TITLE 2 LACTOCOCCUS LACTIS INHIBITED WITH GLUCOSE 6-PHOSPHATE AND TITLE 3 TETRAFLUOROALUMINATE TO 1.1A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-PGM; COMPND 5 EC: 5.4.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_TAXID: 1358; SOURCE 4 STRAIN: IL1403; SOURCE 5 GENE: PGMB, LL0429, L0001; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHOGLUCOMUTASE, TRANSITION-STATE ANALOGUE, GENERAL ACID-BASE KEYWDS 2 CATALYSIS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.ROBERTSON,C.BISSON REVDAT 3 17-JAN-24 5OK2 1 REMARK HETSYN REVDAT 2 29-JUL-20 5OK2 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 29-AUG-18 5OK2 0 JRNL AUTH L.A.JOHNSON,A.J.ROBERTSON,N.J.BAXTER,C.R.TREVITT,C.BISSON, JRNL AUTH 2 Y.JIN,H.P.WOOD,A.M.HOUNSLOW,M.J.CLIFF,G.M.BLACKBURN, JRNL AUTH 3 M.W.BOWLER,J.P.WALTHO JRNL TITL VAN DER WAALS CONTACT BETWEEN NUCLEOPHILE AND TRANSFERRING JRNL TITL 2 PHOSPHORUS IS INSUFFICIENT TO ACHIEVE ENZYME JRNL TITL 3 TRANSITION-STATE ARCHITECTURE JRNL REF ACS CATALYSIS 2018 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.8B01612 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 82789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5715 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 283 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.030 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.021 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.040 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1887 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1840 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2559 ; 1.474 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4261 ; 0.923 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 5.264 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;39.431 ;25.663 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 333 ;10.924 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.537 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2135 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 391 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 939 ; 1.117 ; 1.243 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 938 ; 1.083 ; 1.240 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1186 ; 1.553 ; 1.875 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1187 ; 1.563 ; 1.876 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 948 ; 1.443 ; 1.463 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 948 ; 1.437 ; 1.463 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1372 ; 1.763 ; 2.103 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2314 ; 2.808 ;11.362 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2315 ; 2.808 ;11.367 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3727 ; 1.373 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 58 ;25.325 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3880 ; 7.363 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87229 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 54.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 1.14700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2WF5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24-34% PEG 4000 200MM TRIS PH 7.2 REMARK 280 200MM SODIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.77000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.33500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.14000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.33500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.77000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.14000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 144 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 AL ALF A 301 O1 BG6 A 310 1.89 REMARK 500 OD1 ASP A 8 AL ALF A 301 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 104 O HOH A 565 4555 1.17 REMARK 500 CZ ARG A 104 O HOH A 565 4555 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 -63.84 -101.01 REMARK 500 LEU A 9 -64.62 -102.05 REMARK 500 ASP A 15 38.90 -81.01 REMARK 500 ALA A 113 58.30 -116.77 REMARK 500 LEU A 217 -9.50 -57.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 642 DISTANCE = 6.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASN A 10 O 90.2 REMARK 620 3 ASP A 170 OD1 89.1 90.1 REMARK 620 4 HOH A 431 O 89.9 179.6 89.5 REMARK 620 5 HOH A 463 O 176.1 87.1 88.1 92.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 O REMARK 620 2 ASN A 127 OD1 91.1 REMARK 620 3 HOH A 474 O 97.1 86.2 REMARK 620 4 HOH A 506 O 164.3 101.8 75.1 REMARK 620 5 HOH A 584 O 83.6 81.4 167.6 106.9 REMARK 620 6 HOH A 590 O 83.8 174.6 96.0 83.6 96.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 428 O REMARK 620 2 HOH A 429 O 101.4 REMARK 620 3 HOH A 597 O 98.7 85.9 REMARK 620 4 HOH A 630 O 85.3 92.9 176.0 REMARK 620 5 HOH A 633 O 87.6 170.0 88.4 92.2 REMARK 620 6 HOH A 642 O 168.2 86.6 90.5 85.6 85.2 REMARK 620 N 1 2 3 4 5 DBREF 5OK2 A 1 218 UNP P71447 PGMB_LACLA 1 218 SEQADV 5OK2 ASN A 10 UNP P71447 ASP 10 ENGINEERED MUTATION SEQADV 5OK2 ARG A 125 UNP P71447 LYS 125 ENGINEERED MUTATION SEQADV 5OK2 HIS A 206 UNP P71447 TYR 206 ENGINEERED MUTATION SEQRES 1 A 218 MET PHE LYS ALA VAL LEU PHE ASP LEU ASN GLY VAL ILE SEQRES 2 A 218 THR ASP THR ALA GLU TYR HIS PHE ARG ALA TRP LYS ALA SEQRES 3 A 218 LEU ALA GLU GLU ILE GLY ILE ASN GLY VAL ASP ARG GLN SEQRES 4 A 218 PHE ASN GLU GLN LEU LYS GLY VAL SER ARG GLU ASP SER SEQRES 5 A 218 LEU GLN LYS ILE LEU ASP LEU ALA ASP LYS LYS VAL SER SEQRES 6 A 218 ALA GLU GLU PHE LYS GLU LEU ALA LYS ARG LYS ASN ASP SEQRES 7 A 218 ASN TYR VAL LYS MET ILE GLN ASP VAL SER PRO ALA ASP SEQRES 8 A 218 VAL TYR PRO GLY ILE LEU GLN LEU LEU LYS ASP LEU ARG SEQRES 9 A 218 SER ASN LYS ILE LYS ILE ALA LEU ALA SER ALA SER LYS SEQRES 10 A 218 ASN GLY PRO PHE LEU LEU GLU ARG MET ASN LEU THR GLY SEQRES 11 A 218 TYR PHE ASP ALA ILE ALA ASP PRO ALA GLU VAL ALA ALA SEQRES 12 A 218 SER LYS PRO ALA PRO ASP ILE PHE ILE ALA ALA ALA HIS SEQRES 13 A 218 ALA VAL GLY VAL ALA PRO SER GLU SER ILE GLY LEU GLU SEQRES 14 A 218 ASP SER GLN ALA GLY ILE GLN ALA ILE LYS ASP SER GLY SEQRES 15 A 218 ALA LEU PRO ILE GLY VAL GLY ARG PRO GLU ASP LEU GLY SEQRES 16 A 218 ASP ASP ILE VAL ILE VAL PRO ASP THR SER HIS TYR THR SEQRES 17 A 218 LEU GLU PHE LEU LYS GLU VAL TRP LEU GLN HET ALF A 301 5 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET NA A 307 1 HET MG A 308 1 HET MG A 309 1 HET BG6 A 310 16 HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM BG6 6-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN BG6 BETA-D-GLUCOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D- HETSYN 2 BG6 GLUCOSE; 6-O-PHOSPHONO-D-GLUCOSE; 6-O-PHOSPHONO- HETSYN 3 BG6 GLUCOSE FORMUL 2 ALF AL F4 1- FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 NA NA 1+ FORMUL 9 MG 2(MG 2+) FORMUL 11 BG6 C6 H13 O9 P FORMUL 12 HOH *242(H2 O) HELIX 1 AA1 ASP A 15 ILE A 31 1 17 HELIX 2 AA2 ASP A 37 GLU A 42 1 6 HELIX 3 AA3 SER A 48 ALA A 60 1 13 HELIX 4 AA4 SER A 65 ILE A 84 1 20 HELIX 5 AA5 SER A 88 VAL A 92 5 5 HELIX 6 AA6 GLY A 95 ASN A 106 1 12 HELIX 7 AA7 ASN A 118 MET A 126 1 9 HELIX 8 AA8 LEU A 128 PHE A 132 5 5 HELIX 9 AA9 PRO A 148 VAL A 158 1 11 HELIX 10 AB1 ALA A 161 SER A 163 5 3 HELIX 11 AB2 SER A 171 GLY A 182 1 12 HELIX 12 AB3 ARG A 190 GLY A 195 1 6 HELIX 13 AB4 ASP A 203 TYR A 207 5 5 HELIX 14 AB5 THR A 208 GLN A 218 1 11 SHEET 1 AA1 6 ALA A 134 ILE A 135 0 SHEET 2 AA1 6 LYS A 109 LEU A 112 1 N LEU A 112 O ALA A 134 SHEET 3 AA1 6 ALA A 4 PHE A 7 1 N PHE A 7 O ALA A 111 SHEET 4 AA1 6 SER A 165 GLU A 169 1 O ILE A 166 N LEU A 6 SHEET 5 AA1 6 LEU A 184 VAL A 188 1 O LEU A 184 N GLY A 167 SHEET 6 AA1 6 VAL A 199 VAL A 201 1 O VAL A 201 N GLY A 187 LINK OD2 ASP A 8 MG MG A 308 1555 1555 2.03 LINK O ASN A 10 MG MG A 308 1555 1555 2.09 LINK O GLU A 124 NA NA A 307 1555 1555 2.27 LINK OD1 ASN A 127 NA NA A 307 1555 1555 2.36 LINK OD1 ASP A 170 MG MG A 308 1555 1555 2.04 LINK NA NA A 307 O HOH A 474 1555 1555 2.48 LINK NA NA A 307 O HOH A 506 1555 4545 2.41 LINK NA NA A 307 O HOH A 584 1555 1555 2.39 LINK NA NA A 307 O HOH A 590 1555 1555 2.50 LINK MG MG A 308 O HOH A 431 1555 1555 2.09 LINK MG MG A 308 O HOH A 463 1555 1555 2.10 LINK MG MG A 309 O HOH A 428 1555 1555 2.07 LINK MG MG A 309 O HOH A 429 1555 4555 2.09 LINK MG MG A 309 O HOH A 597 1555 1555 2.09 LINK MG MG A 309 O HOH A 630 1555 1555 2.07 LINK MG MG A 309 O HOH A 633 1555 1555 2.07 LINK MG MG A 309 O HOH A 642 1555 1555 2.09 CISPEP 1 LYS A 145 PRO A 146 0 15.89 CRYST1 37.540 54.280 104.670 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026638 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009554 0.00000