HEADER UNKNOWN FUNCTION 25-JUL-17 5OK8 TITLE CRYSTAL STRUCTURE OF PROTEIN LPP20 (HP1456) FROM HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPP20 LIPOPROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN J99 / ATCC 700824); SOURCE 3 ORGANISM_TAXID: 85963; SOURCE 4 GENE: LPP20, JHP_1349; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS VIRULENCE FACTOR; HELICOBACTER PYLORI; LIPOPROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.ZANOTTI,N.MISHRA,F.VALESSE REVDAT 3 08-MAY-24 5OK8 1 LINK REVDAT 2 18-APR-18 5OK8 1 JRNL REVDAT 1 06-DEC-17 5OK8 0 JRNL AUTH F.VALLESE,N.M.MISHRA,M.PAGLIARI,P.BERTO,G.CODOLO, JRNL AUTH 2 M.DE BERNARD,G.ZANOTTI JRNL TITL HELICOBACTER PYLORI ANTIGENIC LPP20 IS A STRUCTURAL JRNL TITL 2 HOMOLOGUE OF TIP ALPHA AND PROMOTES EPITHELIAL-MESENCHYMAL JRNL TITL 3 TRANSITION. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1861 3263 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 28947343 JRNL DOI 10.1016/J.BBAGEN.2017.09.017 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.180 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 87448 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3931 - 5.8199 1.00 2886 150 0.1919 0.2403 REMARK 3 2 5.8199 - 4.6206 0.99 2837 153 0.1913 0.2189 REMARK 3 3 4.6206 - 4.0368 0.99 2862 146 0.1719 0.1998 REMARK 3 4 4.0368 - 3.6679 0.99 2824 151 0.1839 0.2043 REMARK 3 5 3.6679 - 3.4051 0.99 2865 156 0.1989 0.2443 REMARK 3 6 3.4051 - 3.2044 1.00 2885 148 0.2211 0.2890 REMARK 3 7 3.2044 - 3.0439 1.00 2880 154 0.2372 0.2940 REMARK 3 8 3.0439 - 2.9114 1.00 2848 150 0.2509 0.2814 REMARK 3 9 2.9114 - 2.7994 1.00 2886 154 0.2432 0.2548 REMARK 3 10 2.7994 - 2.7028 1.00 2886 152 0.2354 0.2548 REMARK 3 11 2.7028 - 2.6183 1.00 2894 151 0.2467 0.2594 REMARK 3 12 2.6183 - 2.5434 1.00 2857 148 0.2397 0.3284 REMARK 3 13 2.5434 - 2.4765 0.99 2896 150 0.2577 0.3556 REMARK 3 14 2.4765 - 2.4161 1.00 2859 151 0.2408 0.3086 REMARK 3 15 2.4161 - 2.3611 1.00 2896 152 0.2492 0.2977 REMARK 3 16 2.3611 - 2.3109 1.00 2859 149 0.2643 0.2966 REMARK 3 17 2.3109 - 2.2647 0.98 2829 145 0.3040 0.2842 REMARK 3 18 2.2647 - 2.2219 0.99 2889 152 0.3424 0.4048 REMARK 3 19 2.2219 - 2.1822 0.99 2863 152 0.3027 0.2789 REMARK 3 20 2.1822 - 2.1452 1.00 2844 155 0.2657 0.3017 REMARK 3 21 2.1452 - 2.1106 1.00 2890 150 0.2689 0.3043 REMARK 3 22 2.1106 - 2.0782 1.00 2853 150 0.2674 0.2880 REMARK 3 23 2.0782 - 2.0476 1.00 2887 153 0.2660 0.2802 REMARK 3 24 2.0476 - 2.0188 1.00 2890 154 0.2897 0.3021 REMARK 3 25 2.0188 - 1.9915 1.00 2823 152 0.3039 0.3149 REMARK 3 26 1.9915 - 1.9656 1.00 2891 154 0.3236 0.3584 REMARK 3 27 1.9656 - 1.9410 0.98 2849 146 0.5572 0.6813 REMARK 3 28 1.9410 - 1.9177 1.00 2904 152 0.4807 0.5829 REMARK 3 29 1.9177 - 1.8954 0.97 1935 105 0.5221 0.5920 REMARK 3 30 1.8954 - 1.8741 0.37 807 39 0.0186 0.0170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3606 REMARK 3 ANGLE : 1.025 4850 REMARK 3 CHIRALITY : 0.073 570 REMARK 3 PLANARITY : 0.005 617 REMARK 3 DIHEDRAL : 16.002 2227 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87448 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 48.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.99200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2, 0.1 M HEPES (PH 7.5), 20% REMARK 280 PEG 6000 (SOLUTION NUMBER 44 OF PEGS-II SUIT SCREEN, QUIAGEN, REMARK 280 GERMANY), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.65150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.26100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.21200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.26100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.65150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.21200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 VAL A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 ILE A 8 REMARK 465 LEU A 9 REMARK 465 GLY A 10 REMARK 465 MET A 11 REMARK 465 SER A 12 REMARK 465 VAL A 13 REMARK 465 VAL A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 MET A 17 REMARK 465 VAL A 18 REMARK 465 ILE A 19 REMARK 465 VAL A 20 REMARK 465 GLY A 21 REMARK 465 CYS A 22 REMARK 465 SER A 23 REMARK 465 HIS A 24 REMARK 465 ALA A 25 REMARK 465 PRO A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 ILE A 30 REMARK 465 SER A 31 REMARK 465 LYS A 32 REMARK 465 SER A 33 REMARK 465 ASN A 34 REMARK 465 LYS A 35 REMARK 465 ALA A 36 REMARK 465 TYR A 37 REMARK 465 LYS A 38 REMARK 465 GLU A 39 REMARK 465 ALA A 40 REMARK 465 THR A 41 REMARK 465 LYS A 42 REMARK 465 GLU A 108 REMARK 465 LYS A 109 REMARK 465 THR A 110 REMARK 465 ARG A 111 REMARK 465 THR A 112 REMARK 465 VAL A 113 REMARK 465 ASP A 114 REMARK 465 ALA A 115 REMARK 465 SER A 116 REMARK 465 GLY A 117 REMARK 465 LYS A 118 REMARK 465 ARG A 119 REMARK 465 SER A 120 REMARK 465 ILE A 121 REMARK 465 SER A 122 REMARK 465 GLY A 123 REMARK 465 VAL A 173 REMARK 465 LYS A 174 REMARK 465 LYS A 175 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASN B 3 REMARK 465 GLN B 4 REMARK 465 VAL B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 7 REMARK 465 ILE B 8 REMARK 465 LEU B 9 REMARK 465 GLY B 10 REMARK 465 MET B 11 REMARK 465 SER B 12 REMARK 465 VAL B 13 REMARK 465 VAL B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 MET B 17 REMARK 465 VAL B 18 REMARK 465 ILE B 19 REMARK 465 VAL B 20 REMARK 465 GLY B 21 REMARK 465 CYS B 22 REMARK 465 SER B 23 REMARK 465 HIS B 24 REMARK 465 ALA B 25 REMARK 465 PRO B 26 REMARK 465 LYS B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 ILE B 30 REMARK 465 SER B 31 REMARK 465 LYS B 32 REMARK 465 SER B 33 REMARK 465 ASN B 34 REMARK 465 LYS B 35 REMARK 465 ALA B 36 REMARK 465 TYR B 37 REMARK 465 LYS B 38 REMARK 465 GLU B 39 REMARK 465 ALA B 40 REMARK 465 THR B 41 REMARK 465 LYS B 42 REMARK 465 GLU B 108 REMARK 465 LYS B 109 REMARK 465 THR B 110 REMARK 465 ARG B 111 REMARK 465 THR B 112 REMARK 465 VAL B 113 REMARK 465 ASP B 114 REMARK 465 ALA B 115 REMARK 465 SER B 116 REMARK 465 GLY B 117 REMARK 465 LYS B 118 REMARK 465 ARG B 119 REMARK 465 SER B 120 REMARK 465 ILE B 121 REMARK 465 SER B 122 REMARK 465 GLY B 123 REMARK 465 LYS B 174 REMARK 465 LYS B 175 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 ASN C 3 REMARK 465 GLN C 4 REMARK 465 VAL C 5 REMARK 465 LYS C 6 REMARK 465 LYS C 7 REMARK 465 ILE C 8 REMARK 465 LEU C 9 REMARK 465 GLY C 10 REMARK 465 MET C 11 REMARK 465 SER C 12 REMARK 465 VAL C 13 REMARK 465 VAL C 14 REMARK 465 ALA C 15 REMARK 465 ALA C 16 REMARK 465 MET C 17 REMARK 465 VAL C 18 REMARK 465 ILE C 19 REMARK 465 VAL C 20 REMARK 465 GLY C 21 REMARK 465 CYS C 22 REMARK 465 SER C 23 REMARK 465 HIS C 24 REMARK 465 ALA C 25 REMARK 465 PRO C 26 REMARK 465 LYS C 27 REMARK 465 SER C 28 REMARK 465 GLY C 29 REMARK 465 ILE C 30 REMARK 465 SER C 31 REMARK 465 LYS C 32 REMARK 465 SER C 33 REMARK 465 ASN C 34 REMARK 465 LYS C 35 REMARK 465 ALA C 36 REMARK 465 TYR C 37 REMARK 465 LYS C 38 REMARK 465 GLU C 39 REMARK 465 ALA C 40 REMARK 465 THR C 41 REMARK 465 LYS C 42 REMARK 465 GLU C 108 REMARK 465 LYS C 109 REMARK 465 THR C 110 REMARK 465 ARG C 111 REMARK 465 THR C 112 REMARK 465 VAL C 113 REMARK 465 ASP C 114 REMARK 465 ALA C 115 REMARK 465 SER C 116 REMARK 465 GLY C 117 REMARK 465 LYS C 118 REMARK 465 ARG C 119 REMARK 465 SER C 120 REMARK 465 ILE C 121 REMARK 465 SER C 122 REMARK 465 GLY C 123 REMARK 465 VAL C 173 REMARK 465 LYS C 174 REMARK 465 LYS C 175 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 ASN D 3 REMARK 465 GLN D 4 REMARK 465 VAL D 5 REMARK 465 LYS D 6 REMARK 465 LYS D 7 REMARK 465 ILE D 8 REMARK 465 LEU D 9 REMARK 465 GLY D 10 REMARK 465 MET D 11 REMARK 465 SER D 12 REMARK 465 VAL D 13 REMARK 465 VAL D 14 REMARK 465 ALA D 15 REMARK 465 ALA D 16 REMARK 465 MET D 17 REMARK 465 VAL D 18 REMARK 465 ILE D 19 REMARK 465 VAL D 20 REMARK 465 GLY D 21 REMARK 465 CYS D 22 REMARK 465 SER D 23 REMARK 465 HIS D 24 REMARK 465 ALA D 25 REMARK 465 PRO D 26 REMARK 465 LYS D 27 REMARK 465 SER D 28 REMARK 465 GLY D 29 REMARK 465 ILE D 30 REMARK 465 SER D 31 REMARK 465 LYS D 32 REMARK 465 SER D 33 REMARK 465 ASN D 34 REMARK 465 LYS D 35 REMARK 465 ALA D 36 REMARK 465 TYR D 37 REMARK 465 LYS D 38 REMARK 465 GLU D 39 REMARK 465 ALA D 40 REMARK 465 THR D 41 REMARK 465 LYS D 42 REMARK 465 GLU D 108 REMARK 465 LYS D 109 REMARK 465 THR D 110 REMARK 465 ARG D 111 REMARK 465 THR D 112 REMARK 465 VAL D 113 REMARK 465 ASP D 114 REMARK 465 ALA D 115 REMARK 465 SER D 116 REMARK 465 GLY D 117 REMARK 465 LYS D 118 REMARK 465 ARG D 119 REMARK 465 SER D 120 REMARK 465 ILE D 121 REMARK 465 SER D 122 REMARK 465 GLY D 123 REMARK 465 VAL D 173 REMARK 465 LYS D 174 REMARK 465 LYS D 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 298 O HOH D 301 1.85 REMARK 500 O HOH B 362 O HOH B 364 1.91 REMARK 500 O HOH C 227 O HOH C 284 1.96 REMARK 500 ND2 ASN D 96 O HOH D 201 1.96 REMARK 500 O HOH B 350 O HOH B 353 1.99 REMARK 500 O2S EPE B 201 O HOH B 301 2.01 REMARK 500 O HOH C 227 O HOH D 297 2.01 REMARK 500 NZ LYS A 141 O HOH A 201 2.02 REMARK 500 O HOH C 223 O HOH C 284 2.08 REMARK 500 OD1 ASP A 104 NH2 ARG A 167 2.09 REMARK 500 O HOH D 215 O HOH D 300 2.09 REMARK 500 OE2 GLU B 168 O HOH B 302 2.11 REMARK 500 OE2 GLU A 53 O HOH A 202 2.12 REMARK 500 O HOH C 281 O HOH D 297 2.13 REMARK 500 O HOH D 238 O HOH D 292 2.13 REMARK 500 O HOH A 264 O HOH A 271 2.14 REMARK 500 O HOH D 201 O HOH D 292 2.15 REMARK 500 O MET D 172 O HOH D 202 2.15 REMARK 500 O HOH A 222 O HOH A 275 2.16 REMARK 500 O HOH B 324 O HOH B 375 2.16 REMARK 500 O HOH A 214 O HOH A 215 2.17 REMARK 500 OG1 THR C 124 O HOH C 201 2.18 REMARK 500 O HOH D 280 O HOH D 282 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 239 O HOH C 206 4456 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 105 19.77 -66.51 REMARK 500 GLU A 127 0.61 -66.63 REMARK 500 GLU B 127 -53.45 -124.92 REMARK 500 LYS B 128 4.36 -69.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 71 OD1 REMARK 620 2 HOH B 305 O 80.2 REMARK 620 3 HOH B 329 O 79.4 93.0 REMARK 620 4 HOH B 330 O 87.3 74.8 163.4 REMARK 620 5 HOH C 215 O 141.3 134.8 108.7 87.9 REMARK 620 6 HOH C 275 O 151.5 72.4 94.1 92.9 67.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 202 DBREF 5OK8 A 1 175 UNP P0A0V1 LPP20_HELPJ 1 175 DBREF 5OK8 B 1 175 UNP P0A0V1 LPP20_HELPJ 1 175 DBREF 5OK8 C 1 175 UNP P0A0V1 LPP20_HELPJ 1 175 DBREF 5OK8 D 1 175 UNP P0A0V1 LPP20_HELPJ 1 175 SEQRES 1 A 175 MET LYS ASN GLN VAL LYS LYS ILE LEU GLY MET SER VAL SEQRES 2 A 175 VAL ALA ALA MET VAL ILE VAL GLY CYS SER HIS ALA PRO SEQRES 3 A 175 LYS SER GLY ILE SER LYS SER ASN LYS ALA TYR LYS GLU SEQRES 4 A 175 ALA THR LYS GLY ALA PRO ASP TRP VAL VAL GLY ASP LEU SEQRES 5 A 175 GLU LYS VAL ALA LYS TYR GLU LYS TYR SER GLY VAL PHE SEQRES 6 A 175 LEU GLY ARG ALA GLU ASP LEU ILE THR ASN ASN ASP VAL SEQRES 7 A 175 ASP TYR SER THR ASN GLN ALA THR ALA LYS ALA ARG ALA SEQRES 8 A 175 ASN LEU ALA ALA ASN LEU LYS SER THR LEU GLN LYS ASP SEQRES 9 A 175 LEU GLU ASN GLU LYS THR ARG THR VAL ASP ALA SER GLY SEQRES 10 A 175 LYS ARG SER ILE SER GLY THR ASP THR GLU LYS ILE SER SEQRES 11 A 175 GLN LEU VAL ASP LYS GLU LEU ILE ALA SER LYS MET LEU SEQRES 12 A 175 ALA ARG TYR VAL GLY LYS ASP ARG VAL PHE VAL LEU VAL SEQRES 13 A 175 GLY LEU ASP LYS GLN ILE VAL ASP LYS VAL ARG GLU GLU SEQRES 14 A 175 LEU GLY MET VAL LYS LYS SEQRES 1 B 175 MET LYS ASN GLN VAL LYS LYS ILE LEU GLY MET SER VAL SEQRES 2 B 175 VAL ALA ALA MET VAL ILE VAL GLY CYS SER HIS ALA PRO SEQRES 3 B 175 LYS SER GLY ILE SER LYS SER ASN LYS ALA TYR LYS GLU SEQRES 4 B 175 ALA THR LYS GLY ALA PRO ASP TRP VAL VAL GLY ASP LEU SEQRES 5 B 175 GLU LYS VAL ALA LYS TYR GLU LYS TYR SER GLY VAL PHE SEQRES 6 B 175 LEU GLY ARG ALA GLU ASP LEU ILE THR ASN ASN ASP VAL SEQRES 7 B 175 ASP TYR SER THR ASN GLN ALA THR ALA LYS ALA ARG ALA SEQRES 8 B 175 ASN LEU ALA ALA ASN LEU LYS SER THR LEU GLN LYS ASP SEQRES 9 B 175 LEU GLU ASN GLU LYS THR ARG THR VAL ASP ALA SER GLY SEQRES 10 B 175 LYS ARG SER ILE SER GLY THR ASP THR GLU LYS ILE SER SEQRES 11 B 175 GLN LEU VAL ASP LYS GLU LEU ILE ALA SER LYS MET LEU SEQRES 12 B 175 ALA ARG TYR VAL GLY LYS ASP ARG VAL PHE VAL LEU VAL SEQRES 13 B 175 GLY LEU ASP LYS GLN ILE VAL ASP LYS VAL ARG GLU GLU SEQRES 14 B 175 LEU GLY MET VAL LYS LYS SEQRES 1 C 175 MET LYS ASN GLN VAL LYS LYS ILE LEU GLY MET SER VAL SEQRES 2 C 175 VAL ALA ALA MET VAL ILE VAL GLY CYS SER HIS ALA PRO SEQRES 3 C 175 LYS SER GLY ILE SER LYS SER ASN LYS ALA TYR LYS GLU SEQRES 4 C 175 ALA THR LYS GLY ALA PRO ASP TRP VAL VAL GLY ASP LEU SEQRES 5 C 175 GLU LYS VAL ALA LYS TYR GLU LYS TYR SER GLY VAL PHE SEQRES 6 C 175 LEU GLY ARG ALA GLU ASP LEU ILE THR ASN ASN ASP VAL SEQRES 7 C 175 ASP TYR SER THR ASN GLN ALA THR ALA LYS ALA ARG ALA SEQRES 8 C 175 ASN LEU ALA ALA ASN LEU LYS SER THR LEU GLN LYS ASP SEQRES 9 C 175 LEU GLU ASN GLU LYS THR ARG THR VAL ASP ALA SER GLY SEQRES 10 C 175 LYS ARG SER ILE SER GLY THR ASP THR GLU LYS ILE SER SEQRES 11 C 175 GLN LEU VAL ASP LYS GLU LEU ILE ALA SER LYS MET LEU SEQRES 12 C 175 ALA ARG TYR VAL GLY LYS ASP ARG VAL PHE VAL LEU VAL SEQRES 13 C 175 GLY LEU ASP LYS GLN ILE VAL ASP LYS VAL ARG GLU GLU SEQRES 14 C 175 LEU GLY MET VAL LYS LYS SEQRES 1 D 175 MET LYS ASN GLN VAL LYS LYS ILE LEU GLY MET SER VAL SEQRES 2 D 175 VAL ALA ALA MET VAL ILE VAL GLY CYS SER HIS ALA PRO SEQRES 3 D 175 LYS SER GLY ILE SER LYS SER ASN LYS ALA TYR LYS GLU SEQRES 4 D 175 ALA THR LYS GLY ALA PRO ASP TRP VAL VAL GLY ASP LEU SEQRES 5 D 175 GLU LYS VAL ALA LYS TYR GLU LYS TYR SER GLY VAL PHE SEQRES 6 D 175 LEU GLY ARG ALA GLU ASP LEU ILE THR ASN ASN ASP VAL SEQRES 7 D 175 ASP TYR SER THR ASN GLN ALA THR ALA LYS ALA ARG ALA SEQRES 8 D 175 ASN LEU ALA ALA ASN LEU LYS SER THR LEU GLN LYS ASP SEQRES 9 D 175 LEU GLU ASN GLU LYS THR ARG THR VAL ASP ALA SER GLY SEQRES 10 D 175 LYS ARG SER ILE SER GLY THR ASP THR GLU LYS ILE SER SEQRES 11 D 175 GLN LEU VAL ASP LYS GLU LEU ILE ALA SER LYS MET LEU SEQRES 12 D 175 ALA ARG TYR VAL GLY LYS ASP ARG VAL PHE VAL LEU VAL SEQRES 13 D 175 GLY LEU ASP LYS GLN ILE VAL ASP LYS VAL ARG GLU GLU SEQRES 14 D 175 LEU GLY MET VAL LYS LYS HET EPE B 201 15 HET CA B 202 1 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM CA CALCIUM ION HETSYN EPE HEPES FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 6 CA CA 2+ FORMUL 7 HOH *367(H2 O) HELIX 1 AA1 PRO A 45 GLY A 50 1 6 HELIX 2 AA2 ASP A 51 ALA A 56 1 6 HELIX 3 AA3 LYS A 57 SER A 62 5 6 HELIX 4 AA4 ASP A 77 LEU A 105 1 29 HELIX 5 AA5 ASP A 125 LEU A 137 1 13 HELIX 6 AA6 ILE A 138 SER A 140 5 3 HELIX 7 AA7 LYS A 160 GLY A 171 1 12 HELIX 8 AA8 PRO B 45 GLY B 50 1 6 HELIX 9 AA9 ASP B 51 ALA B 56 1 6 HELIX 10 AB1 LYS B 57 SER B 62 5 6 HELIX 11 AB2 ASP B 77 GLU B 106 1 30 HELIX 12 AB3 ASP B 125 LYS B 135 1 11 HELIX 13 AB4 GLU B 136 SER B 140 5 5 HELIX 14 AB5 LYS B 160 GLY B 171 1 12 HELIX 15 AB6 PRO C 45 GLY C 50 1 6 HELIX 16 AB7 ASP C 51 ALA C 56 1 6 HELIX 17 AB8 LYS C 57 SER C 62 5 6 HELIX 18 AB9 ASP C 77 GLU C 106 1 30 HELIX 19 AC1 ASP C 125 GLU C 127 5 3 HELIX 20 AC2 LYS C 128 LEU C 137 1 10 HELIX 21 AC3 ILE C 138 SER C 140 5 3 HELIX 22 AC4 LYS C 160 LEU C 170 1 11 HELIX 23 AC5 ASP D 51 ALA D 56 1 6 HELIX 24 AC6 LYS D 57 SER D 62 5 6 HELIX 25 AC7 ASP D 77 ASN D 107 1 31 HELIX 26 AC8 ASP D 125 LEU D 137 1 13 HELIX 27 AC9 ILE D 138 SER D 140 5 3 HELIX 28 AD1 LYS D 160 LEU D 170 1 11 SHEET 1 AA1 3 VAL A 64 LEU A 72 0 SHEET 2 AA1 3 ARG A 151 ASP A 159 -1 O VAL A 156 N GLY A 67 SHEET 3 AA1 3 LYS A 141 VAL A 147 -1 N LEU A 143 O LEU A 155 SHEET 1 AA2 3 VAL B 64 LEU B 72 0 SHEET 2 AA2 3 ARG B 151 ASP B 159 -1 O LEU B 158 N PHE B 65 SHEET 3 AA2 3 LYS B 141 VAL B 147 -1 N TYR B 146 O PHE B 153 SHEET 1 AA3 3 VAL C 64 LEU C 72 0 SHEET 2 AA3 3 ARG C 151 ASP C 159 -1 O VAL C 156 N GLY C 67 SHEET 3 AA3 3 LYS C 141 VAL C 147 -1 N TYR C 146 O PHE C 153 SHEET 1 AA4 3 VAL D 64 LEU D 72 0 SHEET 2 AA4 3 ARG D 151 ASP D 159 -1 O VAL D 156 N GLY D 67 SHEET 3 AA4 3 LYS D 141 VAL D 147 -1 N LEU D 143 O LEU D 155 LINK OD1 ASP B 71 CA CA B 202 1555 1555 2.47 LINK CA CA B 202 O HOH B 305 1555 1555 2.24 LINK CA CA B 202 O HOH B 329 1555 1555 2.17 LINK CA CA B 202 O HOH B 330 1555 1555 2.13 LINK CA CA B 202 O HOH C 215 1555 1555 2.48 LINK CA CA B 202 O HOH C 275 1555 1555 2.23 SITE 1 AC1 8 THR B 74 ASN B 75 TYR B 80 HOH B 301 SITE 2 AC1 8 HOH B 317 ALA C 69 GLU C 70 ASN C 92 SITE 1 AC2 6 ASP B 71 HOH B 305 HOH B 329 HOH B 330 SITE 2 AC2 6 HOH C 215 HOH C 275 CRYST1 55.303 90.424 114.522 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018082 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008732 0.00000