HEADER HYDROLASE 25-JUL-17 5OKP TITLE CRYSTAL STRUCTURE OF HUMAN SHIP2 PHOSPHATASE-C2 DOUBLE MUTANT TITLE 2 F593D/L597D COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 5-PHOSPHATASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INOSITOL POLYPHOSPHATE PHOSPHATASE-LIKE PROTEIN 1,INPPL-1, COMPND 5 PROTEIN 51C,SH2 DOMAIN-CONTAINING INOSITOL 5'-PHOSPHATASE 2,SHIP-2; COMPND 6 EC: 3.1.3.86; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THE FIRST TWO RESIDUES ARE FROM THE EXPRESSION VECTOR COMPND 10 IN WHICH THE GENE WAS CLONED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INPPL1, SHIP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINJ KEYWDS SHIP2, PHOSPHATASE, C2, PHOSPHATIDYLINOSITOL (3, 4, 5)-TRIPHOSPHATE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LE COQ,D.LIETHA REVDAT 1 23-AUG-17 5OKP 0 JRNL AUTH J.LE COQ,M.CAMACHO-ARTACHO,J.V.VELAZQUEZ,C.M.SANTIVERI, JRNL AUTH 2 L.H.GALLEGO,R.CAMPOS-OLIVAS,N.DOLKER,D.LIETHA JRNL TITL STRUCTURAL BASIS FOR INTERDOMAIN COMMUNICATION IN SHIP2 JRNL TITL 2 PROVIDING HIGH PHOSPHATASE ACTIVITY. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28792888 JRNL DOI 10.7554/ELIFE.26640 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 40283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2118 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2993 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3394 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : 0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3516 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3218 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4757 ; 1.260 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7473 ; 0.883 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 6.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;33.736 ;24.012 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 610 ;13.218 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.771 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3855 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 742 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1692 ; 0.868 ; 2.051 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1691 ; 0.868 ; 2.050 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2107 ; 1.524 ; 3.058 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2108 ; 1.523 ; 3.059 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1823 ; 0.973 ; 2.222 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1823 ; 0.972 ; 2.222 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2646 ; 1.623 ; 3.267 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3747 ; 3.818 ;23.354 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3728 ; 3.753 ;23.159 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 419 A 731 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1133 16.3896 41.3534 REMARK 3 T TENSOR REMARK 3 T11: 0.0045 T22: 0.0657 REMARK 3 T33: 0.1371 T12: 0.0042 REMARK 3 T13: 0.0177 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.8194 L22: 0.9605 REMARK 3 L33: 0.3500 L12: 0.0156 REMARK 3 L13: -0.0011 L23: 0.0983 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.0053 S13: -0.0039 REMARK 3 S21: 0.0045 S22: 0.0109 S23: 0.0592 REMARK 3 S31: 0.0204 S32: -0.0246 S33: 0.0112 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 746 A 874 REMARK 3 ORIGIN FOR THE GROUP (A): -22.7825 13.8059 65.9312 REMARK 3 T TENSOR REMARK 3 T11: 0.1610 T22: 0.1293 REMARK 3 T33: 0.0492 T12: 0.0470 REMARK 3 T13: 0.0222 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.2838 L22: 5.6144 REMARK 3 L33: 2.3961 L12: 1.6273 REMARK 3 L13: -0.3022 L23: 0.1576 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.0803 S13: 0.1373 REMARK 3 S21: 0.7980 S22: 0.1392 S23: -0.0160 REMARK 3 S31: -0.0532 S32: -0.0410 S33: -0.1533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200001554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40283 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 78.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES PH 7.1, 17.5% PEG 1000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 20.90758 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.71300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.97611 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 20.90758 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.71300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 78.97611 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1123 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1136 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 418 REMARK 465 ASP A 587 REMARK 465 ARG A 588 REMARK 465 GLN A 589 REMARK 465 LEU A 590 REMARK 465 ASN A 591 REMARK 465 ALA A 592 REMARK 465 TRP A 673 REMARK 465 HIS A 674 REMARK 465 LYS A 675 REMARK 465 GLN A 676 REMARK 465 LYS A 677 REMARK 465 PRO A 678 REMARK 465 THR A 679 REMARK 465 GLY A 680 REMARK 465 VAL A 681 REMARK 465 ARG A 682 REMARK 465 GLN A 732 REMARK 465 PHE A 733 REMARK 465 ILE A 734 REMARK 465 SER A 735 REMARK 465 LYS A 736 REMARK 465 LYS A 737 REMARK 465 GLY A 738 REMARK 465 LEU A 739 REMARK 465 SER A 740 REMARK 465 LYS A 741 REMARK 465 THR A 742 REMARK 465 SER A 743 REMARK 465 ASP A 744 REMARK 465 GLN A 745 REMARK 465 SER A 761 REMARK 465 ARG A 762 REMARK 465 GLU A 776 REMARK 465 GLY A 846 REMARK 465 SER A 847 REMARK 465 PRO A 875 REMARK 465 THR A 876 REMARK 465 GLU A 877 REMARK 465 ARG A 878 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 506 -110.09 53.76 REMARK 500 ILE A 534 -65.96 -106.18 REMARK 500 ASN A 551 -117.74 45.50 REMARK 500 SER A 584 70.22 -103.36 REMARK 500 ASN A 684 51.99 39.53 REMARK 500 TYR A 707 109.39 -160.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 904 DBREF 5OKP A 420 878 UNP O15357 SHIP2_HUMAN 420 878 SEQADV 5OKP GLY A 418 UNP O15357 EXPRESSION TAG SEQADV 5OKP PRO A 419 UNP O15357 EXPRESSION TAG SEQADV 5OKP ASP A 593 UNP O15357 PHE 593 ENGINEERED MUTATION SEQADV 5OKP ASP A 597 UNP O15357 LEU 597 ENGINEERED MUTATION SEQRES 1 A 461 GLY PRO GLU PRO ASP MET ILE SER VAL PHE ILE GLY THR SEQRES 2 A 461 TRP ASN MET GLY SER VAL PRO PRO PRO LYS ASN VAL THR SEQRES 3 A 461 SER TRP PHE THR SER LYS GLY LEU GLY LYS THR LEU ASP SEQRES 4 A 461 GLU VAL THR VAL THR ILE PRO HIS ASP ILE TYR VAL PHE SEQRES 5 A 461 GLY THR GLN GLU ASN SER VAL GLY ASP ARG GLU TRP LEU SEQRES 6 A 461 ASP LEU LEU ARG GLY GLY LEU LYS GLU LEU THR ASP LEU SEQRES 7 A 461 ASP TYR ARG PRO ILE ALA MET GLN SER LEU TRP ASN ILE SEQRES 8 A 461 LYS VAL ALA VAL LEU VAL LYS PRO GLU HIS GLU ASN ARG SEQRES 9 A 461 ILE SER HIS VAL SER THR SER SER VAL LYS THR GLY ILE SEQRES 10 A 461 ALA ASN THR LEU GLY ASN LYS GLY ALA VAL GLY VAL SER SEQRES 11 A 461 PHE MET PHE ASN GLY THR SER PHE GLY PHE VAL ASN CYS SEQRES 12 A 461 HIS LEU THR SER GLY ASN GLU LYS THR ALA ARG ARG ASN SEQRES 13 A 461 GLN ASN TYR LEU ASP ILE LEU ARG LEU LEU SER LEU GLY SEQRES 14 A 461 ASP ARG GLN LEU ASN ALA ASP ASP ILE SER ASP ARG PHE SEQRES 15 A 461 THR HIS LEU PHE TRP PHE GLY ASP LEU ASN TYR ARG LEU SEQRES 16 A 461 ASP MET ASP ILE GLN GLU ILE LEU ASN TYR ILE SER ARG SEQRES 17 A 461 LYS GLU PHE GLU PRO LEU LEU ARG VAL ASP GLN LEU ASN SEQRES 18 A 461 LEU GLU ARG GLU LYS HIS LYS VAL PHE LEU ARG PHE SER SEQRES 19 A 461 GLU GLU GLU ILE SER PHE PRO PRO THR TYR ARG TYR GLU SEQRES 20 A 461 ARG GLY SER ARG ASP THR TYR ALA TRP HIS LYS GLN LYS SEQRES 21 A 461 PRO THR GLY VAL ARG THR ASN VAL PRO SER TRP CYS ASP SEQRES 22 A 461 ARG ILE LEU TRP LYS SER TYR PRO GLU THR HIS ILE ILE SEQRES 23 A 461 CYS ASN SER TYR GLY CYS THR ASP ASP ILE VAL THR SER SEQRES 24 A 461 ASP HIS SER PRO VAL PHE GLY THR PHE GLU VAL GLY VAL SEQRES 25 A 461 THR SER GLN PHE ILE SER LYS LYS GLY LEU SER LYS THR SEQRES 26 A 461 SER ASP GLN ALA TYR ILE GLU PHE GLU SER ILE GLU ALA SEQRES 27 A 461 ILE VAL LYS THR ALA SER ARG THR LYS PHE PHE ILE GLU SEQRES 28 A 461 PHE TYR SER THR CYS LEU GLU GLU TYR LYS LYS SER PHE SEQRES 29 A 461 GLU ASN ASP ALA GLN SER SER ASP ASN ILE ASN PHE LEU SEQRES 30 A 461 LYS VAL GLN TRP SER SER ARG GLN LEU PRO THR LEU LYS SEQRES 31 A 461 PRO ILE LEU ALA ASP ILE GLU TYR LEU GLN ASP GLN HIS SEQRES 32 A 461 LEU LEU LEU THR VAL LYS SER MET ASP GLY TYR GLU SER SEQRES 33 A 461 TYR GLY GLU CYS VAL VAL ALA LEU LYS SER MET ILE GLY SEQRES 34 A 461 SER THR ALA GLN GLN PHE LEU THR PHE LEU SER HIS ARG SEQRES 35 A 461 GLY GLU GLU THR GLY ASN ILE ARG GLY SER MET LYS VAL SEQRES 36 A 461 ARG VAL PRO THR GLU ARG HET EDO A 901 4 HET EDO A 902 4 HET EDO A 903 4 HET EDO A 904 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 HOH *139(H2 O) HELIX 1 AA1 VAL A 442 THR A 447 1 6 HELIX 2 AA2 GLY A 477 ASP A 494 1 18 HELIX 3 AA3 PRO A 516 ASN A 520 5 5 HELIX 4 AA4 LYS A 568 LEU A 583 1 16 HELIX 5 AA5 ASP A 594 ARG A 598 5 5 HELIX 6 AA6 ASP A 615 ARG A 625 1 11 HELIX 7 AA7 PHE A 628 ARG A 633 1 6 HELIX 8 AA8 ASP A 635 LYS A 643 1 9 HELIX 9 AA9 ARG A 801 LEU A 803 5 3 HELIX 10 AB1 ASP A 812 GLN A 817 1 6 SHEET 1 AA1 7 LEU A 451 LYS A 453 0 SHEET 2 AA1 7 ILE A 702 CYS A 709 -1 O CYS A 709 N LEU A 451 SHEET 3 AA1 7 VAL A 721 GLY A 728 -1 O PHE A 722 N GLY A 708 SHEET 4 AA1 7 MET A 423 ASN A 432 -1 N ILE A 428 O GLY A 723 SHEET 5 AA1 7 ILE A 466 GLN A 472 1 O GLY A 470 N GLY A 429 SHEET 6 AA1 7 ILE A 508 VAL A 514 -1 O LEU A 513 N TYR A 467 SHEET 7 AA1 7 ARG A 498 LEU A 505 -1 N ARG A 498 O VAL A 514 SHEET 1 AA2 5 ILE A 522 LYS A 531 0 SHEET 2 AA2 5 GLY A 542 PHE A 550 -1 O MET A 549 N SER A 523 SHEET 3 AA2 5 THR A 553 HIS A 561 -1 O THR A 553 N PHE A 550 SHEET 4 AA2 5 HIS A 601 ASP A 607 1 O PHE A 605 N VAL A 558 SHEET 5 AA2 5 ASP A 690 SER A 696 -1 O LYS A 695 N LEU A 602 SHEET 1 AA3 5 ALA A 785 SER A 787 0 SHEET 2 AA3 5 PHE A 793 SER A 799 -1 O LYS A 795 N SER A 787 SHEET 3 AA3 5 TYR A 747 LYS A 758 -1 N ALA A 755 O VAL A 796 SHEET 4 AA3 5 GLU A 861 ARG A 873 -1 O ARG A 867 N GLU A 754 SHEET 5 AA3 5 GLN A 850 HIS A 858 -1 N THR A 854 O ILE A 866 SHEET 1 AA4 4 LYS A 778 LYS A 779 0 SHEET 2 AA4 4 PHE A 765 TYR A 770 -1 N PHE A 769 O LYS A 778 SHEET 3 AA4 4 HIS A 820 SER A 827 -1 O LEU A 822 N TYR A 770 SHEET 4 AA4 4 SER A 833 ALA A 840 -1 O TYR A 834 N VAL A 825 CISPEP 1 TYR A 661 ARG A 662 0 -2.67 SITE 1 AC1 6 VAL A 442 THR A 443 GLY A 488 ALA A 535 SITE 2 AC1 6 ASN A 536 HOH A1064 SITE 1 AC2 6 ASN A 441 VAL A 442 THR A 443 SER A 444 SITE 2 AC2 6 ASP A 712 ILE A 713 SITE 1 AC3 2 MET A 423 ILE A 462 SITE 1 AC4 3 HIS A 524 SER A 547 PHE A 548 CRYST1 43.745 73.426 157.964 90.00 90.70 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022860 0.000000 0.000280 0.00000 SCALE2 0.000000 0.013619 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006331 0.00000