HEADER HYDROLASE 26-JUL-17 5OL0 TITLE STRUCTURE OF LEISHMANIA INFANTUM SILENT INFORMATION REGULATOR 2 TITLE 2 RELATED PROTEIN 1 (LISIR2RP1) IN COMPLEX WITH ACETYLATED P53 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SILENT INFORMATION REGULATOR 2,PUTATIVE SILENT COMPND 3 INFORMATION REGULATOR 2; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: SIR2-LIKE PROTEIN,SIR2-LIKE PROTEIN; COMPND 6 EC: 2.4.2.31,2.4.2.31; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: COMPARED TO UNIPROT SEQUENCE Q8I6E4, REGION P253-E300 COMPND 9 WAS DELETED FROM EXPRESSED SEQUENCE; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 12 CHAIN: C, D; COMPND 13 FRAGMENT: UNP RESIDUES 372-389; COMPND 14 SYNONYM: ANTIGEN NY-CO-13,PHOSPHOPROTEIN P53,TUMOR SUPPRESSOR P53; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: ACETYLATED P53 LYS-382 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA INFANTUM; SOURCE 3 ORGANISM_TAXID: 5671; SOURCE 4 GENE: SIR2RP1, LINJ_26_0200; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS NAD-DEPENDENT HISTONE DEACETYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.RONIN,F.CIESIELSKI,P.CIAPETTI REVDAT 3 17-JAN-24 5OL0 1 REMARK REVDAT 2 28-MAR-18 5OL0 1 JRNL REVDAT 1 28-FEB-18 5OL0 0 JRNL AUTH C.RONIN,D.M.COSTA,J.TAVARES,J.FARIA,F.CIESIELSKI,P.CIAPETTI, JRNL AUTH 2 T.K.SMITH,J.MACDOUGALL,A.CORDEIRO-DA-SILVA,I.K.PEMBERTON JRNL TITL THE CRYSTAL STRUCTURE OF THE LEISHMANIA INFANTUM SILENT JRNL TITL 2 INFORMATION REGULATOR 2 RELATED PROTEIN 1: IMPLICATIONS TO JRNL TITL 3 PROTEIN FUNCTION AND DRUG DESIGN. JRNL REF PLOS ONE V. 13 93602 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 29543820 JRNL DOI 10.1371/JOURNAL.PONE.0193602 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 36411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1917 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2460 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4385 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -1.68000 REMARK 3 B33 (A**2) : 1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.913 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4488 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4248 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6073 ; 1.832 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9801 ; 1.090 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 556 ; 5.873 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;34.459 ;22.935 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 733 ;14.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;16.351 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 687 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4963 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 934 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2245 ; 3.441 ; 3.863 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2244 ; 3.427 ; 3.862 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2794 ; 4.710 ; 5.761 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2795 ; 4.710 ; 5.763 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2243 ; 4.534 ; 4.460 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2244 ; 4.533 ; 4.462 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3280 ; 6.810 ; 6.472 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4828 ; 8.697 ;46.804 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4799 ; 8.688 ;46.701 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38331 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 46.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 15.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.14 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50600 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 3GLT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM NA HEPES PH7.5; 25% PEG2000 MME, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.83500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 304 REMARK 465 SER A 305 REMARK 465 THR A 306 REMARK 465 SER A 307 REMARK 465 SER A 308 REMARK 465 SER A 309 REMARK 465 SER A 310 REMARK 465 ASP A 311 REMARK 465 GLY A 312 REMARK 465 TYR A 313 REMARK 465 GLY A 314 REMARK 465 GLN A 315 REMARK 465 TYR A 316 REMARK 465 GLY A 317 REMARK 465 ASP A 318 REMARK 465 TYR A 319 REMARK 465 HIS A 320 REMARK 465 ALA A 321 REMARK 465 HIS A 322 REMARK 465 PRO A 323 REMARK 465 ALA A 361 REMARK 465 ALA A 362 REMARK 465 PRO A 363 REMARK 465 ALA A 364 REMARK 465 THR A 365 REMARK 465 ALA A 366 REMARK 465 GLN A 367 REMARK 465 ARG A 368 REMARK 465 ALA A 369 REMARK 465 PRO A 370 REMARK 465 ASN A 371 REMARK 465 GLU A 372 REMARK 465 THR A 373 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 ARG B 6 REMARK 465 ARG B 52 REMARK 465 SER B 53 REMARK 465 PRO B 54 REMARK 465 ASP B 55 REMARK 465 THR B 56 REMARK 465 GLY B 57 REMARK 465 ILE B 58 REMARK 465 TYR B 59 REMARK 465 ALA B 60 REMARK 465 ASN B 61 REMARK 465 LEU B 62 REMARK 465 GLY B 63 REMARK 465 LYS B 64 REMARK 465 TYR B 65 REMARK 465 ASN B 66 REMARK 465 LEU B 67 REMARK 465 GLU B 68 REMARK 465 ASP B 69 REMARK 465 PRO B 70 REMARK 465 ALA B 304 REMARK 465 SER B 305 REMARK 465 THR B 306 REMARK 465 SER B 307 REMARK 465 SER B 308 REMARK 465 SER B 309 REMARK 465 SER B 310 REMARK 465 ASP B 311 REMARK 465 GLY B 312 REMARK 465 TYR B 313 REMARK 465 GLY B 314 REMARK 465 GLN B 315 REMARK 465 TYR B 316 REMARK 465 GLY B 317 REMARK 465 ASP B 318 REMARK 465 TYR B 319 REMARK 465 HIS B 320 REMARK 465 ALA B 321 REMARK 465 HIS B 322 REMARK 465 PRO B 323 REMARK 465 ASP B 324 REMARK 465 ALA B 361 REMARK 465 ALA B 362 REMARK 465 PRO B 363 REMARK 465 ALA B 364 REMARK 465 THR B 365 REMARK 465 ALA B 366 REMARK 465 GLN B 367 REMARK 465 ARG B 368 REMARK 465 ALA B 369 REMARK 465 PRO B 370 REMARK 465 ASN B 371 REMARK 465 GLU B 372 REMARK 465 THR B 373 REMARK 465 LYS C 372 REMARK 465 LYS C 373 REMARK 465 GLY C 374 REMARK 465 GLN C 375 REMARK 465 SER C 376 REMARK 465 THR C 377 REMARK 465 SER C 378 REMARK 465 THR C 387 REMARK 465 GLU C 388 REMARK 465 GLY C 389 REMARK 465 LYS D 372 REMARK 465 LYS D 373 REMARK 465 GLY D 374 REMARK 465 GLN D 375 REMARK 465 SER D 376 REMARK 465 THR D 377 REMARK 465 THR D 387 REMARK 465 GLU D 388 REMARK 465 GLY D 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1198 O HOH A 1201 2.02 REMARK 500 NE2 GLN A 124 OG1 THR A 217 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 327 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 327 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP B 334 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 33 70.85 -115.36 REMARK 500 ASN A 66 78.80 60.19 REMARK 500 ASP A 69 122.58 127.09 REMARK 500 LEU A 211 139.02 -170.83 REMARK 500 SER A 359 41.73 -154.34 REMARK 500 THR B 178 -73.38 -58.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 152 SG REMARK 620 2 CYS A 155 SG 116.6 REMARK 620 3 CYS A 176 SG 105.2 98.6 REMARK 620 4 CYS A 179 SG 97.8 124.1 113.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 152 SG REMARK 620 2 CYS B 155 SG 111.1 REMARK 620 3 CYS B 176 SG 103.9 106.5 REMARK 620 4 CYS B 179 SG 94.0 129.0 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 DBREF 5OL0 A 1 252 UNP Q8I6E4 Q8I6E4_LEIIN 1 252 DBREF 5OL0 A 304 373 UNP Q8I6E4 Q8I6E4_LEIIN 304 373 DBREF 5OL0 B 1 252 UNP Q8I6E4 Q8I6E4_LEIIN 1 252 DBREF 5OL0 B 304 373 UNP Q8I6E4 Q8I6E4_LEIIN 304 373 DBREF 5OL0 C 372 389 UNP P04637 P53_HUMAN 372 389 DBREF 5OL0 D 372 389 UNP P04637 P53_HUMAN 372 389 SEQADV 5OL0 GLY A -1 UNP Q8I6E4 EXPRESSION TAG SEQADV 5OL0 HIS A 0 UNP Q8I6E4 EXPRESSION TAG SEQADV 5OL0 GLY B -1 UNP Q8I6E4 EXPRESSION TAG SEQADV 5OL0 HIS B 0 UNP Q8I6E4 EXPRESSION TAG SEQRES 1 A 324 GLY HIS MET THR ALA SER PRO ARG ALA PRO HIS GLN GLU SEQRES 2 A 324 HIS VAL LEU GLY GLU PRO THR LEU GLU GLY LEU ALA HIS SEQRES 3 A 324 TYR ILE ARG GLU LYS ASN VAL ARG ARG ILE LEU VAL LEU SEQRES 4 A 324 VAL GLY ALA GLY ALA SER VAL ALA ALA GLY ILE PRO ASP SEQRES 5 A 324 PHE ARG SER PRO ASP THR GLY ILE TYR ALA ASN LEU GLY SEQRES 6 A 324 LYS TYR ASN LEU GLU ASP PRO THR ASP ALA PHE SER LEU SEQRES 7 A 324 THR LEU LEU ARG GLU LYS PRO GLU ILE PHE TYR SER ILE SEQRES 8 A 324 ALA ARG GLU LEU ASN LEU TRP PRO GLY HIS PHE GLN PRO SEQRES 9 A 324 THR ALA VAL HIS HIS PHE ILE ARG LEU LEU GLN ASP GLU SEQRES 10 A 324 GLY ARG LEU LEU ARG CYS CYS THR GLN ASN ILE ASP GLY SEQRES 11 A 324 LEU GLU LYS ALA ALA GLY VAL SER PRO GLU LEU LEU VAL SEQRES 12 A 324 GLU ALA HIS GLY SER PHE ALA ALA ALA ALA CYS ILE GLU SEQRES 13 A 324 CYS HIS THR PRO PHE SER ILE GLU GLN ASN TYR LEU GLU SEQRES 14 A 324 ALA MET SER GLY THR VAL SER ARG CYS SER THR CYS GLY SEQRES 15 A 324 GLY ILE VAL LYS PRO ASN VAL VAL PHE PHE GLY GLU ASN SEQRES 16 A 324 LEU PRO ASP ALA PHE PHE ASP ALA LEU HIS HIS ASP ALA SEQRES 17 A 324 PRO ILE ALA GLU LEU VAL ILE ILE ILE GLY THR SER MET SEQRES 18 A 324 GLN VAL HIS PRO PHE ALA LEU LEU PRO CYS VAL VAL PRO SEQRES 19 A 324 LYS SER VAL PRO ARG VAL VAL MET ASN ARG GLU ARG VAL SEQRES 20 A 324 GLY GLY LEU LEU PHE ARG PHE ALA SER THR SER SER SER SEQRES 21 A 324 SER ASP GLY TYR GLY GLN TYR GLY ASP TYR HIS ALA HIS SEQRES 22 A 324 PRO ASP VAL CYS ARG ASP VAL LEU PHE ARG GLY ASP CYS SEQRES 23 A 324 GLN GLU ASN VAL VAL THR LEU ALA GLU TYR LEU GLY LEU SEQRES 24 A 324 SER GLU ALA LEU ALA LYS ARG MET ARG LEU SER ASP ALA SEQRES 25 A 324 ALA PRO ALA THR ALA GLN ARG ALA PRO ASN GLU THR SEQRES 1 B 324 GLY HIS MET THR ALA SER PRO ARG ALA PRO HIS GLN GLU SEQRES 2 B 324 HIS VAL LEU GLY GLU PRO THR LEU GLU GLY LEU ALA HIS SEQRES 3 B 324 TYR ILE ARG GLU LYS ASN VAL ARG ARG ILE LEU VAL LEU SEQRES 4 B 324 VAL GLY ALA GLY ALA SER VAL ALA ALA GLY ILE PRO ASP SEQRES 5 B 324 PHE ARG SER PRO ASP THR GLY ILE TYR ALA ASN LEU GLY SEQRES 6 B 324 LYS TYR ASN LEU GLU ASP PRO THR ASP ALA PHE SER LEU SEQRES 7 B 324 THR LEU LEU ARG GLU LYS PRO GLU ILE PHE TYR SER ILE SEQRES 8 B 324 ALA ARG GLU LEU ASN LEU TRP PRO GLY HIS PHE GLN PRO SEQRES 9 B 324 THR ALA VAL HIS HIS PHE ILE ARG LEU LEU GLN ASP GLU SEQRES 10 B 324 GLY ARG LEU LEU ARG CYS CYS THR GLN ASN ILE ASP GLY SEQRES 11 B 324 LEU GLU LYS ALA ALA GLY VAL SER PRO GLU LEU LEU VAL SEQRES 12 B 324 GLU ALA HIS GLY SER PHE ALA ALA ALA ALA CYS ILE GLU SEQRES 13 B 324 CYS HIS THR PRO PHE SER ILE GLU GLN ASN TYR LEU GLU SEQRES 14 B 324 ALA MET SER GLY THR VAL SER ARG CYS SER THR CYS GLY SEQRES 15 B 324 GLY ILE VAL LYS PRO ASN VAL VAL PHE PHE GLY GLU ASN SEQRES 16 B 324 LEU PRO ASP ALA PHE PHE ASP ALA LEU HIS HIS ASP ALA SEQRES 17 B 324 PRO ILE ALA GLU LEU VAL ILE ILE ILE GLY THR SER MET SEQRES 18 B 324 GLN VAL HIS PRO PHE ALA LEU LEU PRO CYS VAL VAL PRO SEQRES 19 B 324 LYS SER VAL PRO ARG VAL VAL MET ASN ARG GLU ARG VAL SEQRES 20 B 324 GLY GLY LEU LEU PHE ARG PHE ALA SER THR SER SER SER SEQRES 21 B 324 SER ASP GLY TYR GLY GLN TYR GLY ASP TYR HIS ALA HIS SEQRES 22 B 324 PRO ASP VAL CYS ARG ASP VAL LEU PHE ARG GLY ASP CYS SEQRES 23 B 324 GLN GLU ASN VAL VAL THR LEU ALA GLU TYR LEU GLY LEU SEQRES 24 B 324 SER GLU ALA LEU ALA LYS ARG MET ARG LEU SER ASP ALA SEQRES 25 B 324 ALA PRO ALA THR ALA GLN ARG ALA PRO ASN GLU THR SEQRES 1 C 18 LYS LYS GLY GLN SER THR SER ARG HIS LYS ALY LEU MET SEQRES 2 C 18 PHE LYS THR GLU GLY SEQRES 1 D 18 LYS LYS GLY GLN SER THR SER ARG HIS LYS ALY LEU MET SEQRES 2 D 18 PHE LYS THR GLU GLY MODRES 5OL0 ALY C 382 LYS MODIFIED RESIDUE MODRES 5OL0 ALY D 382 LYS MODIFIED RESIDUE HET ALY C 382 12 HET ALY D 382 12 HET ZN A1001 1 HET ZN B1001 1 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION FORMUL 3 ALY 2(C8 H16 N2 O3) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *239(H2 O) HELIX 1 AA1 ALA A 7 GLU A 11 5 5 HELIX 2 AA2 THR A 18 LYS A 29 1 12 HELIX 3 AA3 ALA A 40 GLY A 47 5 8 HELIX 4 AA4 THR A 56 ASN A 66 1 11 HELIX 5 AA5 ASP A 69 PHE A 74 5 6 HELIX 6 AA6 SER A 75 LYS A 82 1 8 HELIX 7 AA7 LYS A 82 ASN A 94 1 13 HELIX 8 AA8 THR A 103 GLU A 115 1 13 HELIX 9 AA9 GLY A 128 ALA A 133 1 6 HELIX 10 AB1 SER A 160 SER A 170 1 11 HELIX 11 AB2 PRO A 195 ASP A 205 1 11 HELIX 12 AB3 ALA A 206 ALA A 209 5 4 HELIX 13 AB4 PRO A 223 VAL A 230 5 8 HELIX 14 AB5 GLY A 246 PHE A 250 5 5 HELIX 15 AB6 ASP A 334 LEU A 346 1 13 HELIX 16 AB7 LEU A 348 LEU A 358 1 11 HELIX 17 AB8 SER A 359 ASP A 360 5 2 HELIX 18 AB9 ALA B 7 GLU B 11 5 5 HELIX 19 AC1 THR B 18 LYS B 29 1 12 HELIX 20 AC2 ALA B 40 GLY B 47 5 8 HELIX 21 AC3 THR B 71 PHE B 74 5 4 HELIX 22 AC4 SER B 75 LYS B 82 1 8 HELIX 23 AC5 LYS B 82 ASN B 94 1 13 HELIX 24 AC6 THR B 103 GLU B 115 1 13 HELIX 25 AC7 GLY B 128 ALA B 133 1 6 HELIX 26 AC8 SER B 160 SER B 170 1 11 HELIX 27 AC9 PRO B 195 HIS B 204 1 10 HELIX 28 AD1 ASP B 205 ALA B 209 5 5 HELIX 29 AD2 PRO B 223 VAL B 231 5 9 HELIX 30 AD3 GLY B 246 PHE B 250 5 5 HELIX 31 AD4 ASP B 334 LEU B 346 1 13 HELIX 32 AD5 LEU B 348 ASP B 360 1 13 SHEET 1 AA1 6 LEU A 140 GLU A 142 0 SHEET 2 AA1 6 LEU A 118 THR A 123 1 N CYS A 121 O VAL A 141 SHEET 3 AA1 6 ILE A 34 VAL A 38 1 N VAL A 36 O CYS A 122 SHEET 4 AA1 6 LEU A 211 ILE A 215 1 O ILE A 215 N LEU A 37 SHEET 5 AA1 6 ARG A 237 MET A 240 1 O VAL A 238 N ILE A 214 SHEET 6 AA1 6 ASP A 328 PHE A 331 1 O PHE A 331 N VAL A 239 SHEET 1 AA2 3 PRO A 158 PHE A 159 0 SHEET 2 AA2 3 GLY A 145 CYS A 152 -1 N ALA A 150 O PHE A 159 SHEET 3 AA2 3 VAL A 183 VAL A 187 -1 O LYS A 184 N ALA A 151 SHEET 1 AA3 6 LEU B 140 GLU B 142 0 SHEET 2 AA3 6 LEU B 118 THR B 123 1 N CYS B 121 O VAL B 141 SHEET 3 AA3 6 ILE B 34 VAL B 38 1 N VAL B 36 O CYS B 122 SHEET 4 AA3 6 LEU B 211 ILE B 215 1 O ILE B 215 N LEU B 37 SHEET 5 AA3 6 ARG B 237 MET B 240 1 O VAL B 238 N VAL B 212 SHEET 6 AA3 6 ASP B 328 PHE B 331 1 O PHE B 331 N VAL B 239 SHEET 1 AA4 3 PRO B 158 PHE B 159 0 SHEET 2 AA4 3 GLY B 145 CYS B 152 -1 N ALA B 150 O PHE B 159 SHEET 3 AA4 3 VAL B 183 VAL B 187 -1 O ASN B 186 N ALA B 149 LINK C LYS C 381 N ALY C 382 1555 1555 1.32 LINK C ALY C 382 N LEU C 383 1555 1555 1.33 LINK C LYS D 381 N ALY D 382 1555 1555 1.33 LINK C ALY D 382 N LEU D 383 1555 1555 1.34 LINK SG CYS A 152 ZN ZN A1001 1555 1555 2.32 LINK SG CYS A 155 ZN ZN A1001 1555 1555 2.27 LINK SG CYS A 176 ZN ZN A1001 1555 1555 2.33 LINK SG CYS A 179 ZN ZN A1001 1555 1555 2.35 LINK SG CYS B 152 ZN ZN B1001 1555 1555 2.32 LINK SG CYS B 155 ZN ZN B1001 1555 1555 2.22 LINK SG CYS B 176 ZN ZN B1001 1555 1555 2.33 LINK SG CYS B 179 ZN ZN B1001 1555 1555 2.33 CISPEP 1 HIS A 222 PRO A 223 0 3.07 CISPEP 2 HIS B 222 PRO B 223 0 4.14 SITE 1 AC1 4 CYS A 152 CYS A 155 CYS A 176 CYS A 179 SITE 1 AC2 4 CYS B 152 CYS B 155 CYS B 176 CYS B 179 CRYST1 66.020 65.670 66.620 90.00 97.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015147 0.000000 0.002061 0.00000 SCALE2 0.000000 0.015228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015149 0.00000