HEADER MEMBRANE PROTEIN 28-JUL-17 5OM4 TITLE STRUCTURE OF THE A2A-STAR2-BRIL562-COMPOUND 4E COMPLEX AT 1.86A TITLE 2 OBTAINED FROM IN MESO SOAKING EXPERIMENTS (24 HOUR SOAK). COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE RECEPTOR A2A,SOLUBLE CYTOCHROME B562,ADENOSINE COMPND 3 RECEPTOR A2A; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: CYTOCHROME B-562; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 562; SOURCE 5 GENE: ADORA2A, ADORA2, CYBC; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS KEYWDS G-PROTEIN COUPLED RECEPTOR, ADENOSINE 2A RECEPTOR, 7 TM INTEGRAL KEYWDS 2 MEMBRANE PROTEIN, THERMOSTABILIZING MUTATIONS, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.RUCKTOOA,R.K.Y.CHENG,E.SEGALA,T.GENG,J.C.ERREY,G.A.BROWN,R.COOKE, AUTHOR 2 F.H.MARSHALL,A.S.DORE REVDAT 3 06-NOV-24 5OM4 1 REMARK REVDAT 2 17-JAN-24 5OM4 1 LINK REVDAT 1 17-JAN-18 5OM4 0 JRNL AUTH P.RUCKTOOA,R.K.Y.CHENG,E.SEGALA,T.GENG,J.C.ERREY,G.A.BROWN, JRNL AUTH 2 R.M.COOKE,F.H.MARSHALL,A.S.DORE JRNL TITL TOWARDS HIGH THROUGHPUT GPCR CRYSTALLOGRAPHY: IN MESO JRNL TITL 2 SOAKING OF ADENOSINE A2A RECEPTOR CRYSTALS. JRNL REF SCI REP V. 8 41 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29311713 JRNL DOI 10.1038/S41598-017-18570-W REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12RC2_2821: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 63810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9268 - 5.6785 0.99 2675 115 0.1790 0.1856 REMARK 3 2 5.6785 - 4.5109 1.00 2706 126 0.1655 0.1853 REMARK 3 3 4.5109 - 3.9417 1.00 2659 134 0.1459 0.1598 REMARK 3 4 3.9417 - 3.5818 1.00 2658 130 0.1446 0.1622 REMARK 3 5 3.5818 - 3.3253 1.00 2691 139 0.1553 0.1629 REMARK 3 6 3.3253 - 3.1294 0.99 2721 115 0.1651 0.1872 REMARK 3 7 3.1294 - 2.9728 0.99 2627 124 0.1695 0.1814 REMARK 3 8 2.9728 - 2.8435 1.00 2632 164 0.1660 0.2185 REMARK 3 9 2.8435 - 2.7341 0.98 2619 170 0.1667 0.2044 REMARK 3 10 2.7341 - 2.6398 0.99 2618 141 0.1717 0.1895 REMARK 3 11 2.6398 - 2.5573 0.97 2619 124 0.1790 0.2019 REMARK 3 12 2.5573 - 2.4842 0.99 2617 122 0.1947 0.2257 REMARK 3 13 2.4842 - 2.4188 0.96 2551 190 0.1995 0.2596 REMARK 3 14 2.4188 - 2.3598 0.99 2652 130 0.1994 0.2260 REMARK 3 15 2.3598 - 2.3062 0.98 2612 145 0.2111 0.2531 REMARK 3 16 2.3062 - 2.2571 0.95 2590 98 0.2345 0.2454 REMARK 3 17 2.2571 - 2.2120 0.99 2634 146 0.2392 0.2394 REMARK 3 18 2.2120 - 2.1702 0.97 2577 150 0.2518 0.2432 REMARK 3 19 2.1702 - 2.1315 0.98 2676 131 0.2570 0.2235 REMARK 3 20 2.1315 - 2.0954 1.00 2601 150 0.2717 0.3022 REMARK 3 21 2.0954 - 2.0616 0.98 2637 146 0.2798 0.3082 REMARK 3 22 2.0616 - 2.0299 0.97 2570 148 0.3046 0.3193 REMARK 3 23 2.0299 - 2.0000 1.00 2683 147 0.3201 0.3716 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3741 REMARK 3 ANGLE : 0.929 4974 REMARK 3 CHIRALITY : 0.039 543 REMARK 3 PLANARITY : 0.003 593 REMARK 3 DIHEDRAL : 11.507 1916 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND (RESSEQ -1:208 OR RESSEQ 219:305 OR REMARK 3 RESSEQ 1201)) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8179 -5.9816 17.6668 REMARK 3 T TENSOR REMARK 3 T11: 0.1526 T22: 0.2271 REMARK 3 T33: 0.1210 T12: -0.0020 REMARK 3 T13: 0.0094 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.9658 L22: 1.5815 REMARK 3 L33: 1.2675 L12: 0.1684 REMARK 3 L13: 0.2874 L23: 0.0498 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: -0.0149 S13: -0.0841 REMARK 3 S21: -0.0730 S22: 0.0038 S23: -0.0038 REMARK 3 S31: 0.1335 S32: -0.0836 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND (RESSEQ 1001:1106)) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8667 -54.6646 20.1003 REMARK 3 T TENSOR REMARK 3 T11: 0.4121 T22: 0.3254 REMARK 3 T33: 0.7840 T12: 0.0766 REMARK 3 T13: -0.0001 T23: -0.0678 REMARK 3 L TENSOR REMARK 3 L11: 1.2811 L22: 6.3110 REMARK 3 L33: 4.4319 L12: -1.9157 REMARK 3 L13: 1.2706 L23: -2.3303 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.3263 S13: 0.5259 REMARK 3 S21: -0.3628 S22: -0.0076 S23: -0.2663 REMARK 3 S31: 0.0587 S32: 0.0556 S33: -0.0180 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200006028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3-5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96857 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33687 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 32.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.50800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5MZJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTAL GROWTH: 0.L M TRI-SODIUM REMARK 280 CITRATE PH 5.3-5.4, 0.05 M SODIUM THIOCYANATE, 29-32% PEG400, 2% REMARK 280 (V/V) 2,5-HEXANEDIOL AND 0.5 MM THEOPHYLLINE COMPOUND 4E WAS REMARK 280 ADDED TO THE MOTHER LIQUOR TO A CONCENTRATION OF 0.005 MM FOR REMARK 280 THE SOAKING EXPERIMENTS., LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.01600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.01600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.73250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.55450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.73250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.55450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.01600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.73250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.55450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.01600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.73250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.55450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -9 REMARK 465 ASP A -8 REMARK 465 TYR A -7 REMARK 465 LYS A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ALA A 1043 REMARK 465 THR A 1044 REMARK 465 PRO A 1045 REMARK 465 PRO A 1046 REMARK 465 LYS A 1047 REMARK 465 LEU A 1048 REMARK 465 GLU A 1049 REMARK 465 ASP A 1050 REMARK 465 LYS A 1051 REMARK 465 SER A 1052 REMARK 465 PRO A 1053 REMARK 465 ASP A 1054 REMARK 465 SER A 1055 REMARK 465 PRO A 1056 REMARK 465 GLU A 1057 REMARK 465 MET A 1058 REMARK 465 LEU A 308 REMARK 465 ARG A 309 REMARK 465 GLN A 310 REMARK 465 GLN A 311 REMARK 465 GLU A 312 REMARK 465 PRO A 313 REMARK 465 PHE A 314 REMARK 465 LYS A 315 REMARK 465 ALA A 316 REMARK 465 ALA A 317 REMARK 465 ALA A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1412 O HOH A 1437 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 -52.87 -121.13 REMARK 500 TYR A1101 -56.77 -132.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 1209 REMARK 610 OLA A 1211 REMARK 610 OLA A 1212 REMARK 610 OLA A 1213 REMARK 610 OLA A 1214 REMARK 610 OLA A 1215 REMARK 610 OLA A 1216 REMARK 610 OLA A 1218 REMARK 610 OLA A 1219 REMARK 610 OLA A 1220 REMARK 610 OLA A 1221 REMARK 610 OLC A 1223 REMARK 610 OLC A 1224 REMARK 610 OLC A 1225 REMARK 610 OLC A 1228 REMARK 610 OLC A 1229 REMARK 610 OLC A 1230 REMARK 610 OLC A 1232 REMARK 610 OLC A 1233 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD1 REMARK 620 2 SER A 91 OG 131.1 REMARK 620 3 HOH A1359 O 101.4 122.3 REMARK 620 4 HOH A1373 O 76.7 120.3 89.8 REMARK 620 5 HOH A1382 O 90.2 68.7 92.7 166.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T4E A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1233 DBREF 5OM4 A 2 208 UNP P29274 AA2AR_HUMAN 2 208 DBREF 5OM4 A 1001 1106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 5OM4 A 219 317 UNP P29274 AA2AR_HUMAN 219 317 SEQADV 5OM4 ALA A -9 UNP P29274 EXPRESSION TAG SEQADV 5OM4 ASP A -8 UNP P29274 EXPRESSION TAG SEQADV 5OM4 TYR A -7 UNP P29274 EXPRESSION TAG SEQADV 5OM4 LYS A -6 UNP P29274 EXPRESSION TAG SEQADV 5OM4 ASP A -5 UNP P29274 EXPRESSION TAG SEQADV 5OM4 ASP A -4 UNP P29274 EXPRESSION TAG SEQADV 5OM4 ASP A -3 UNP P29274 EXPRESSION TAG SEQADV 5OM4 ASP A -2 UNP P29274 EXPRESSION TAG SEQADV 5OM4 GLY A -1 UNP P29274 EXPRESSION TAG SEQADV 5OM4 ALA A 0 UNP P29274 EXPRESSION TAG SEQADV 5OM4 PRO A 1 UNP P29274 EXPRESSION TAG SEQADV 5OM4 LEU A 54 UNP P29274 ALA 54 ENGINEERED MUTATION SEQADV 5OM4 ALA A 88 UNP P29274 THR 88 ENGINEERED MUTATION SEQADV 5OM4 ALA A 107 UNP P29274 ARG 107 ENGINEERED MUTATION SEQADV 5OM4 ALA A 122 UNP P29274 LYS 122 ENGINEERED MUTATION SEQADV 5OM4 ALA A 154 UNP P29274 ASN 154 ENGINEERED MUTATION SEQADV 5OM4 ALA A 202 UNP P29274 LEU 202 ENGINEERED MUTATION SEQADV 5OM4 TRP A 1007 UNP P0ABE7 MET 29 ENGINEERED MUTATION SEQADV 5OM4 ILE A 1102 UNP P0ABE7 HIS 124 ENGINEERED MUTATION SEQADV 5OM4 LEU A 1106 UNP P0ABE7 ARG 128 ENGINEERED MUTATION SEQADV 5OM4 ALA A 235 UNP P29274 LEU 235 ENGINEERED MUTATION SEQADV 5OM4 ALA A 239 UNP P29274 VAL 239 ENGINEERED MUTATION SEQADV 5OM4 ALA A 277 UNP P29274 SER 277 ENGINEERED MUTATION SEQADV 5OM4 ALA A 318 UNP P29274 EXPRESSION TAG SEQADV 5OM4 HIS A 319 UNP P29274 EXPRESSION TAG SEQADV 5OM4 HIS A 320 UNP P29274 EXPRESSION TAG SEQADV 5OM4 HIS A 321 UNP P29274 EXPRESSION TAG SEQADV 5OM4 HIS A 322 UNP P29274 EXPRESSION TAG SEQADV 5OM4 HIS A 323 UNP P29274 EXPRESSION TAG SEQADV 5OM4 HIS A 324 UNP P29274 EXPRESSION TAG SEQADV 5OM4 HIS A 325 UNP P29274 EXPRESSION TAG SEQADV 5OM4 HIS A 326 UNP P29274 EXPRESSION TAG SEQADV 5OM4 HIS A 327 UNP P29274 EXPRESSION TAG SEQADV 5OM4 HIS A 328 UNP P29274 EXPRESSION TAG SEQRES 1 A 434 ALA ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO PRO ILE SEQRES 2 A 434 MET GLY SER SER VAL TYR ILE THR VAL GLU LEU ALA ILE SEQRES 3 A 434 ALA VAL LEU ALA ILE LEU GLY ASN VAL LEU VAL CYS TRP SEQRES 4 A 434 ALA VAL TRP LEU ASN SER ASN LEU GLN ASN VAL THR ASN SEQRES 5 A 434 TYR PHE VAL VAL SER LEU ALA ALA ALA ASP ILE LEU VAL SEQRES 6 A 434 GLY VAL LEU ALA ILE PRO PHE ALA ILE THR ILE SER THR SEQRES 7 A 434 GLY PHE CYS ALA ALA CYS HIS GLY CYS LEU PHE ILE ALA SEQRES 8 A 434 CYS PHE VAL LEU VAL LEU ALA GLN SER SER ILE PHE SER SEQRES 9 A 434 LEU LEU ALA ILE ALA ILE ASP ARG TYR ILE ALA ILE ALA SEQRES 10 A 434 ILE PRO LEU ARG TYR ASN GLY LEU VAL THR GLY THR ARG SEQRES 11 A 434 ALA ALA GLY ILE ILE ALA ILE CYS TRP VAL LEU SER PHE SEQRES 12 A 434 ALA ILE GLY LEU THR PRO MET LEU GLY TRP ASN ASN CYS SEQRES 13 A 434 GLY GLN PRO LYS GLU GLY LYS ALA HIS SER GLN GLY CYS SEQRES 14 A 434 GLY GLU GLY GLN VAL ALA CYS LEU PHE GLU ASP VAL VAL SEQRES 15 A 434 PRO MET ASN TYR MET VAL TYR PHE ASN PHE PHE ALA CYS SEQRES 16 A 434 VAL LEU VAL PRO LEU LEU LEU MET LEU GLY VAL TYR LEU SEQRES 17 A 434 ARG ILE PHE ALA ALA ALA ARG ARG GLN LEU ALA ASP LEU SEQRES 18 A 434 GLU ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS VAL SEQRES 19 A 434 ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP ALA SEQRES 20 A 434 LEU THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN LYS SEQRES 21 A 434 ALA THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SER SEQRES 22 A 434 PRO GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE LEU SEQRES 23 A 434 VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN GLU SEQRES 24 A 434 GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN LEU SEQRES 25 A 434 LYS THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU GLU SEQRES 26 A 434 ARG ALA ARG SER THR LEU GLN LYS GLU VAL HIS ALA ALA SEQRES 27 A 434 LYS SER ALA ALA ILE ILE ALA GLY LEU PHE ALA LEU CYS SEQRES 28 A 434 TRP LEU PRO LEU HIS ILE ILE ASN CYS PHE THR PHE PHE SEQRES 29 A 434 CYS PRO ASP CYS SER HIS ALA PRO LEU TRP LEU MET TYR SEQRES 30 A 434 LEU ALA ILE VAL LEU ALA HIS THR ASN SER VAL VAL ASN SEQRES 31 A 434 PRO PHE ILE TYR ALA TYR ARG ILE ARG GLU PHE ARG GLN SEQRES 32 A 434 THR PHE ARG LYS ILE ILE ARG SER HIS VAL LEU ARG GLN SEQRES 33 A 434 GLN GLU PRO PHE LYS ALA ALA ALA HIS HIS HIS HIS HIS SEQRES 34 A 434 HIS HIS HIS HIS HIS HET T4E A1201 21 HET NA A1202 1 HET CLR A1203 28 HET CLR A1204 28 HET CLR A1205 28 HET CLR A1206 28 HET OLA A1207 20 HET OLA A1208 20 HET OLA A1209 9 HET OLA A1210 20 HET OLA A1211 18 HET OLA A1212 14 HET OLA A1213 13 HET OLA A1214 12 HET OLA A1215 12 HET OLA A1216 10 HET OLA A1217 20 HET OLA A1218 9 HET OLA A1219 19 HET OLA A1220 12 HET OLA A1221 9 HET OLA A1222 20 HET OLC A1223 19 HET OLC A1224 16 HET OLC A1225 22 HET OLC A1226 25 HET OLC A1227 25 HET OLC A1228 24 HET OLC A1229 17 HET OLC A1230 14 HET OLC A1231 25 HET OLC A1232 17 HET OLC A1233 17 HETNAM T4E 4-(3-AMINO-5-PHENYL-1,2,4-TRIAZIN-6-YL)-2-CHLOROPHENOL HETNAM NA SODIUM ION HETNAM CLR CHOLESTEROL HETNAM OLA OLEIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 T4E C15 H11 CL N4 O FORMUL 3 NA NA 1+ FORMUL 4 CLR 4(C27 H46 O) FORMUL 8 OLA 16(C18 H34 O2) FORMUL 24 OLC 11(C21 H40 O4) FORMUL 35 HOH *156(H2 O) HELIX 1 AA1 PRO A 1 ASN A 34 1 34 HELIX 2 AA2 SER A 35 GLN A 38 5 4 HELIX 3 AA3 ASN A 39 LEU A 58 1 20 HELIX 4 AA4 LEU A 58 THR A 68 1 11 HELIX 5 AA5 CYS A 74 ILE A 108 1 35 HELIX 6 AA6 ARG A 111 VAL A 116 1 6 HELIX 7 AA7 THR A 117 LEU A 137 1 21 HELIX 8 AA8 THR A 138 GLY A 142 5 5 HELIX 9 AA9 LYS A 150 GLN A 157 1 8 HELIX 10 AB1 LEU A 167 VAL A 172 1 6 HELIX 11 AB2 PRO A 173 PHE A 180 1 8 HELIX 12 AB3 VAL A 186 LYS A 1019 1 42 HELIX 13 AB4 ASN A 1022 LYS A 1042 1 21 HELIX 14 AB5 ASP A 1060 GLU A 1081 1 22 HELIX 15 AB6 LYS A 1083 GLN A 1093 1 11 HELIX 16 AB7 GLN A 1093 TYR A 1101 1 9 HELIX 17 AB8 TYR A 1101 CYS A 259 1 47 HELIX 18 AB9 PRO A 266 ILE A 292 1 27 HELIX 19 AC1 ILE A 292 VAL A 307 1 16 SHEET 1 AA1 2 CYS A 71 ALA A 73 0 SHEET 2 AA1 2 GLN A 163 ALA A 165 -1 O VAL A 164 N ALA A 72 SSBOND 1 CYS A 71 CYS A 159 1555 1555 2.04 SSBOND 2 CYS A 74 CYS A 146 1555 1555 2.04 SSBOND 3 CYS A 77 CYS A 166 1555 1555 2.04 SSBOND 4 CYS A 259 CYS A 262 1555 1555 2.04 LINK OD1 ASP A 52 NA NA A1202 1555 1555 2.46 LINK OG SER A 91 NA NA A1202 1555 1555 2.52 LINK NA NA A1202 O HOH A1359 1555 1555 2.60 LINK NA NA A1202 O HOH A1373 1555 1555 2.35 LINK NA NA A1202 O HOH A1382 1555 1555 2.54 SITE 1 AC1 13 VAL A 84 LEU A 85 PHE A 168 GLU A 169 SITE 2 AC1 13 MET A 177 TRP A 246 LEU A 249 HIS A 250 SITE 3 AC1 13 ASN A 253 HIS A 278 HOH A1318 HOH A1381 SITE 4 AC1 13 HOH A1413 SITE 1 AC2 5 ASP A 52 SER A 91 HOH A1359 HOH A1373 SITE 2 AC2 5 HOH A1382 SITE 1 AC3 7 HIS A 75 GLY A 76 LEU A 137 CLR A1204 SITE 2 AC3 7 OLC A1232 OLC A1233 HOH A1313 SITE 1 AC4 9 ALA A 72 ALA A 73 GLY A 76 ILE A 80 SITE 2 AC4 9 CLR A1203 CLR A1206 OLC A1223 OLC A1227 SITE 3 AC4 9 HOH A1354 SITE 1 AC5 5 PRO A 248 CYS A 262 SER A 263 OLA A1221 SITE 2 AC5 5 HOH A1338 SITE 1 AC6 7 CYS A 254 PHE A 255 CYS A 259 CLR A1204 SITE 2 AC6 7 OLC A1225 OLC A1227 HOH A1370 SITE 1 AC7 4 THR A 65 OLA A1217 OLC A1227 HOH A1324 SITE 1 AC8 1 THR A 11 SITE 1 AC9 3 PHE A 44 ALA A 97 VAL A 116 SITE 1 AD1 7 GLY A 123 ILE A 127 LEU A 131 ALA A 184 SITE 2 AD1 7 VAL A 188 OLC A1224 OLC A1226 SITE 1 AD2 4 GLY A 5 TYR A 271 VAL A 275 OLA A1213 SITE 1 AD3 3 LEU A 198 ARG A 199 ALA A 202 SITE 1 AD4 4 VAL A 12 THR A 279 PHE A 286 OLA A1211 SITE 1 AD5 3 SER A 7 LEU A 19 PHE A 286 SITE 1 AD6 3 TRP A 268 LEU A 272 OLA A1222 SITE 1 AD7 1 ILE A 287 SITE 1 AD8 3 OLA A1207 OLC A1225 OLC A1231 SITE 1 AD9 2 LEU A 190 ALA A 236 SITE 1 AE1 5 TRP A 29 TRP A 32 PHE A 201 LYS A 233 SITE 2 AE1 5 OLC A1229 SITE 1 AE2 3 ALA A 236 GLY A 240 LEU A 244 SITE 1 AE3 2 LEU A 244 CLR A1205 SITE 1 AE4 1 OLA A1215 SITE 1 AE5 8 GLN A 163 PHE A 258 CLR A1204 OLC A1233 SITE 2 AE5 8 HOH A1303 HOH A1336 HOH A1354 HOH A1406 SITE 1 AE6 9 HIS A 75 MET A 140 LEU A 141 GLY A 142 SITE 2 AE6 9 ASN A 144 ASN A 175 TYR A 179 OLA A1210 SITE 3 AE6 9 OLC A1232 SITE 1 AE7 7 ASP A 261 CYS A 262 CLR A1206 OLA A1217 SITE 2 AE7 7 OLC A1227 HOH A1338 HOH A1405 SITE 1 AE8 4 TYR A 103 ARG A 120 ILE A 127 OLA A1210 SITE 1 AE9 11 VAL A 57 LEU A 58 THR A 65 PHE A 70 SITE 2 AE9 11 CYS A 71 CLR A1204 CLR A1206 OLA A1207 SITE 3 AE9 11 OLC A1225 HOH A1354 HOH A1404 SITE 1 AF1 4 TYR A 43 LEU A 58 ILE A 125 TRP A 129 SITE 1 AF2 6 CYS A 28 VAL A 31 TYR A 43 ALA A 50 SITE 2 AF2 6 ARG A 205 OLA A1219 SITE 1 AF3 7 PRO A 2 SER A 6 ILE A 10 SER A 67 SITE 2 AF3 7 THR A 68 GLN A 157 OLA A1217 SITE 1 AF4 4 HIS A 75 MET A 140 CLR A1203 OLC A1224 SITE 1 AF5 5 TYR A 179 CLR A1203 OLC A1223 HOH A1345 SITE 2 AF5 5 HOH A1368 CRYST1 39.465 179.109 140.032 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005583 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007141 0.00000