data_5OMZ # _entry.id 5OMZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5OMZ pdb_00005omz 10.2210/pdb5omz/pdb WWPDB D_1200006044 ? ? BMRB 34167 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of domain III (DIII)of Zika virus Envelope protein' _pdbx_database_related.db_id 34167 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5OMZ _pdbx_database_status.recvd_initial_deposition_date 2017-08-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zerbe, O.' 1 0000-0003-0475-438X 'Bardelli, M.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 171 _citation.language ? _citation.page_first 229 _citation.page_last 241.e15 _citation.title 'A Human Bi-specific Antibody against Zika Virus with High Therapeutic Potential.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2017.09.002 _citation.pdbx_database_id_PubMed 28938115 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, J.' 1 ? primary 'Bardelli, M.' 2 ? primary 'Espinosa, D.A.' 3 ? primary 'Pedotti, M.' 4 ? primary 'Ng, T.S.' 5 ? primary 'Bianchi, S.' 6 ? primary 'Simonelli, L.' 7 ? primary 'Lim, E.X.Y.' 8 ? primary 'Foglierini, M.' 9 ? primary 'Zatta, F.' 10 ? primary 'Jaconi, S.' 11 ? primary 'Beltramello, M.' 12 ? primary 'Cameroni, E.' 13 ? primary 'Fibriansah, G.' 14 ? primary 'Shi, J.' 15 ? primary 'Barca, T.' 16 ? primary 'Pagani, I.' 17 ? primary 'Rubio, A.' 18 ? primary 'Broccoli, V.' 19 ? primary 'Vicenzi, E.' 20 ? primary 'Graham, V.' 21 ? primary 'Pullan, S.' 22 ? primary 'Dowall, S.' 23 ? primary 'Hewson, R.' 24 ? primary 'Jurt, S.' 25 ? primary 'Zerbe, O.' 26 ? primary 'Stettler, K.' 27 ? primary 'Lanzavecchia, A.' 28 ? primary 'Sallusto, F.' 29 ? primary 'Cavalli, A.' 30 ? primary 'Harris, E.' 31 ? primary 'Lok, S.M.' 32 ? primary 'Varani, L.' 33 ? primary 'Corti, D.' 34 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Envelope Protein' _entity.formula_weight 12479.393 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'DOMAIN DIII, UNP residues 585-699' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKM MLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGK ; _entity_poly.pdbx_seq_one_letter_code_can ;MDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKM MLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 LYS n 1 4 LEU n 1 5 ARG n 1 6 LEU n 1 7 LYS n 1 8 GLY n 1 9 VAL n 1 10 SER n 1 11 TYR n 1 12 SER n 1 13 LEU n 1 14 CYS n 1 15 THR n 1 16 ALA n 1 17 ALA n 1 18 PHE n 1 19 THR n 1 20 PHE n 1 21 THR n 1 22 LYS n 1 23 ILE n 1 24 PRO n 1 25 ALA n 1 26 GLU n 1 27 THR n 1 28 LEU n 1 29 HIS n 1 30 GLY n 1 31 THR n 1 32 VAL n 1 33 THR n 1 34 VAL n 1 35 GLU n 1 36 VAL n 1 37 GLN n 1 38 TYR n 1 39 ALA n 1 40 GLY n 1 41 THR n 1 42 ASP n 1 43 GLY n 1 44 PRO n 1 45 CYS n 1 46 LYS n 1 47 VAL n 1 48 PRO n 1 49 ALA n 1 50 GLN n 1 51 MET n 1 52 ALA n 1 53 VAL n 1 54 ASP n 1 55 MET n 1 56 GLN n 1 57 THR n 1 58 LEU n 1 59 THR n 1 60 PRO n 1 61 VAL n 1 62 GLY n 1 63 ARG n 1 64 LEU n 1 65 ILE n 1 66 THR n 1 67 ALA n 1 68 ASN n 1 69 PRO n 1 70 VAL n 1 71 ILE n 1 72 THR n 1 73 GLU n 1 74 SER n 1 75 THR n 1 76 GLU n 1 77 ASN n 1 78 SER n 1 79 LYS n 1 80 MET n 1 81 MET n 1 82 LEU n 1 83 GLU n 1 84 LEU n 1 85 ASP n 1 86 PRO n 1 87 PRO n 1 88 PHE n 1 89 GLY n 1 90 ASP n 1 91 SER n 1 92 TYR n 1 93 ILE n 1 94 VAL n 1 95 ILE n 1 96 GLY n 1 97 VAL n 1 98 GLY n 1 99 GLU n 1 100 LYS n 1 101 LYS n 1 102 ILE n 1 103 THR n 1 104 HIS n 1 105 HIS n 1 106 TRP n 1 107 HIS n 1 108 ARG n 1 109 SER n 1 110 GLY n 1 111 SER n 1 112 THR n 1 113 ILE n 1 114 GLY n 1 115 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 115 _entity_src_gen.gene_src_common_name ZIKV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Zika virus (strain Mr 766)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 64320 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A1V0E2E5_ZIKV _struct_ref.pdbx_db_accession A0A1V0E2E5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKM MLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGK ; _struct_ref.pdbx_align_begin 585 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5OMZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A1V0E2E5 _struct_ref_seq.db_align_beg 585 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 699 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 115 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 15 1 1 '2D 1H-13C HSQC aliphatic' 2 isotropic 16 1 1 '2D 1H-13C HSQC aromatic' 2 isotropic 5 1 1 '3D HNCO' 2 isotropic 10 1 1 '3D HN(CA)CO' 2 isotropic 3 1 1 '3D CBCA(CO)NH' 2 isotropic 4 1 1 '3D HNCACB' 2 isotropic 12 1 1 '3D HCCH-TOCSY' 2 isotropic 14 1 1 '3D H(C)CH' 2 isotropic 11 1 1 '3D HBHA(CO)NH' 2 isotropic 9 1 1 '3D 1H-15N NOESY' 2 isotropic 8 1 1 '3D 1H-13C NOESY aliphatic' 2 isotropic 7 1 1 '3D 1H-13C NOESY aromatic' 2 isotropic 2 1 2 '2D 1H-15N HSQC' 2 isotropic 6 1 2 '3D 1H-15N NOESY' 2 isotropic 13 1 2 '3D HNCO' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 300 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.27 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '800 uM 15N,13C ZIKA Envelope DIII, 20 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O' '90% H2O/10% D2O' sample_H2O solution 'sample for resonance assignment and structure determination' 2 '400 uM 2H,13C,15N ZIKA Envelope DIII, 20 mM sodium phosphate, 50 mM sodium chloride, 440 uM ZKA190 Fab, 90% H2O/10% D2O' '90% H2O/10% D2O' 'sample for mapping' solution 'perdeuterated 13C,15N sample' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AV-4 ? Bruker 600 ? 2 AVANCE ? Bruker 700 ? # _pdbx_nmr_refine.entry_id 5OMZ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'further refinement in AMBER' _pdbx_nmr_refine.software_ordinal 5 # _pdbx_nmr_ensemble.entry_id 5OMZ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5OMZ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 4 processing TopSpin 2.1 'Bruker Biospin' 1 'chemical shift assignment' CARA 1.93 'Keller and Wuthrich' 5 'structure calculation' CYANA 3.97 'Guntert, Mumenthaler and Wuthrich' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5OMZ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5OMZ _struct.title 'Solution structure of domain III (DIII)of Zika virus Envelope protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5OMZ _struct_keywords.text 'ZIKA virus Envelope protein domain, VIRAL PROTEIN, ZIKV' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 1 0.12 2 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 2 0.02 3 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 3 0.01 4 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 4 -0.02 5 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 5 0.12 6 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 6 0.03 7 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 7 -0.04 8 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 8 0.09 9 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 9 0.14 10 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 10 0.04 11 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 11 -0.06 12 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 12 0.02 13 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 13 0.02 14 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 14 0.08 15 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 15 0.16 16 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 16 0.12 17 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 17 -0.16 18 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 18 0.00 19 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 19 -0.08 20 GLY 43 A . ? GLY 43 A PRO 44 A ? PRO 44 A 20 0.11 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 20 ? LYS A 22 ? PHE A 20 LYS A 22 AA1 2 GLU A 35 ? VAL A 36 ? GLU A 35 VAL A 36 AA2 1 ARG A 63 ? LEU A 64 ? ARG A 63 LEU A 64 AA2 2 LEU A 84 ? ASP A 85 ? LEU A 84 ASP A 85 AA3 1 VAL A 94 ? ILE A 95 ? VAL A 94 ILE A 95 AA3 2 ILE A 102 ? THR A 103 ? ILE A 102 THR A 103 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 21 ? N THR A 21 O GLU A 35 ? O GLU A 35 AA2 1 2 O ARG A 63 ? O ARG A 63 N ASP A 85 ? N ASP A 85 AA3 1 2 N ILE A 95 ? N ILE A 95 O ILE A 102 ? O ILE A 102 # _atom_sites.entry_id 5OMZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 MET 51 51 51 MET MET A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 MET 55 55 55 MET MET A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 MET 80 80 80 MET MET A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 HIS 104 104 104 HIS HIS A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 TRP 106 106 106 TRP TRP A . n A 1 107 HIS 107 107 107 HIS HIS A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 LYS 115 115 115 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 9230 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-04 2 'Structure model' 1 1 2019-05-08 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_nmr_software 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_nmr_software.name' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'ZIKA Envelope DIII' 800 ? uM 15N,13C 1 'sodium phosphate' 20 ? mM 'natural abundance' 1 'sodium chloride' 50 ? mM 'natural abundance' 2 'ZIKA Envelope DIII' 400 ? uM 2H,13C,15N 2 'sodium phosphate' 20 ? mM 'natural abundance' 2 'sodium chloride' 50 ? mM 'natural abundance' 2 'ZKA190 Fab' 440 ? uM 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 10 ? ? -176.15 112.65 2 1 ASN A 68 ? ? -170.57 73.22 3 1 THR A 75 ? ? -53.46 171.98 4 1 PRO A 87 ? ? -69.79 -179.08 5 1 LYS A 100 ? ? -94.67 34.62 6 2 ALA A 39 ? ? -95.27 42.24 7 2 ASP A 42 ? ? -96.22 35.69 8 2 ALA A 52 ? ? -176.66 121.79 9 2 PRO A 60 ? ? -69.79 87.89 10 2 ASN A 68 ? ? -175.42 72.33 11 2 GLU A 76 ? ? -59.98 179.25 12 2 PRO A 87 ? ? -69.72 -172.22 13 2 LYS A 100 ? ? -95.66 34.39 14 2 HIS A 104 ? ? -163.68 114.82 15 3 ALA A 39 ? ? -96.90 38.78 16 3 ASP A 42 ? ? -173.74 107.83 17 3 ALA A 52 ? ? -171.85 106.99 18 3 GLU A 76 ? ? -54.51 172.37 19 3 PRO A 87 ? ? -69.77 -173.22 20 3 LYS A 100 ? ? -95.04 34.59 21 3 SER A 109 ? ? -171.52 -179.09 22 3 ILE A 113 ? ? -66.42 -175.84 23 4 SER A 10 ? ? -94.98 41.57 24 4 THR A 15 ? ? -151.47 82.60 25 4 ALA A 16 ? ? -62.85 -176.95 26 4 ALA A 39 ? ? -96.96 -68.59 27 4 ASN A 68 ? ? -178.94 71.85 28 4 GLU A 76 ? ? -59.34 178.37 29 4 PRO A 87 ? ? -69.72 -173.88 30 4 LYS A 100 ? ? -95.78 34.22 31 4 THR A 112 ? ? -126.29 -57.81 32 5 LYS A 7 ? ? -62.51 -70.64 33 5 THR A 41 ? ? -131.26 -39.80 34 5 ASP A 42 ? ? -161.51 101.52 35 5 PRO A 87 ? ? -69.70 -170.79 36 5 LYS A 100 ? ? -95.38 34.37 37 5 HIS A 105 ? ? -53.51 102.29 38 6 ALA A 25 ? ? -178.07 127.62 39 6 THR A 41 ? ? -95.19 34.27 40 6 ASN A 77 ? ? 60.98 71.41 41 6 PRO A 87 ? ? -69.72 -171.39 42 6 LYS A 100 ? ? -94.61 35.13 43 6 LYS A 101 ? ? -49.94 166.37 44 6 THR A 112 ? ? -108.98 -73.54 45 7 ALA A 52 ? ? -173.16 -178.77 46 7 PRO A 60 ? ? -69.80 92.12 47 7 ASN A 68 ? ? -174.06 73.40 48 7 THR A 75 ? ? -53.32 172.36 49 7 LYS A 100 ? ? -95.97 34.24 50 8 LYS A 3 ? ? -169.38 114.16 51 8 GLN A 50 ? ? -171.20 147.78 52 8 ASN A 68 ? ? -172.55 74.02 53 8 LYS A 100 ? ? -95.76 34.30 54 8 SER A 109 ? ? -170.09 -177.95 55 9 SER A 10 ? ? -171.04 121.73 56 9 ALA A 16 ? ? -170.42 134.97 57 9 ALA A 39 ? ? -101.46 71.30 58 9 ASN A 68 ? ? -176.52 72.50 59 9 MET A 80 ? ? -160.48 117.95 60 9 PRO A 87 ? ? -69.75 -171.91 61 9 SER A 109 ? ? -109.14 -63.75 62 9 THR A 112 ? ? -105.22 44.23 63 10 ASP A 2 ? ? -115.23 52.59 64 10 ALA A 25 ? ? -172.75 129.75 65 10 ALA A 39 ? ? -95.81 52.16 66 10 ASP A 42 ? ? -160.19 98.09 67 10 ASN A 68 ? ? -178.83 69.05 68 10 GLU A 76 ? ? -63.44 -179.11 69 10 PRO A 87 ? ? -69.74 -171.54 70 10 LYS A 100 ? ? -95.25 34.39 71 10 SER A 109 ? ? -137.55 -59.99 72 10 THR A 112 ? ? -109.24 40.46 73 11 LYS A 7 ? ? -60.70 -178.09 74 11 SER A 10 ? ? -175.05 134.57 75 11 ALA A 25 ? ? -178.25 124.08 76 11 THR A 41 ? ? -95.51 35.78 77 11 ASP A 42 ? ? -120.16 -67.50 78 11 ALA A 52 ? ? -175.41 147.82 79 11 ASN A 68 ? ? -175.90 68.46 80 11 GLU A 76 ? ? -57.12 176.28 81 11 PRO A 87 ? ? -69.76 -172.23 82 11 LYS A 100 ? ? -94.91 34.55 83 12 ALA A 25 ? ? -172.67 142.96 84 12 GLN A 50 ? ? -173.93 143.51 85 12 THR A 66 ? ? -54.76 174.16 86 12 ASN A 68 ? ? -176.94 73.74 87 12 MET A 80 ? ? -173.66 123.32 88 12 PRO A 87 ? ? -69.76 -170.90 89 12 HIS A 104 ? ? -164.78 116.54 90 13 LEU A 4 ? ? -117.22 62.50 91 13 SER A 12 ? ? -174.04 -178.76 92 13 THR A 41 ? ? -95.22 34.91 93 13 ALA A 52 ? ? -169.98 100.51 94 13 ASN A 68 ? ? -165.08 73.74 95 13 THR A 75 ? ? -53.01 171.77 96 13 PRO A 87 ? ? -69.78 -170.92 97 13 LYS A 100 ? ? -95.41 34.35 98 14 ALA A 25 ? ? -171.14 119.78 99 14 ALA A 39 ? ? -115.64 56.98 100 14 THR A 41 ? ? -98.26 43.15 101 14 ASP A 42 ? ? -108.45 42.53 102 14 ALA A 52 ? ? -167.65 118.94 103 14 THR A 66 ? ? -56.84 174.11 104 14 ASN A 68 ? ? -179.05 73.62 105 14 PRO A 87 ? ? -69.75 -171.32 106 14 LYS A 100 ? ? -95.37 34.50 107 15 ALA A 16 ? ? -63.00 -177.63 108 15 ASP A 42 ? ? 62.29 61.44 109 15 THR A 66 ? ? -55.49 174.61 110 15 ASN A 68 ? ? -167.19 74.26 111 15 GLU A 76 ? ? -58.68 -177.34 112 15 PRO A 87 ? ? -69.73 -170.84 113 15 SER A 91 ? ? -131.09 -75.04 114 15 LYS A 100 ? ? -94.53 34.57 115 16 THR A 15 ? ? -151.03 80.70 116 16 ALA A 39 ? ? -78.24 -75.71 117 16 PRO A 60 ? ? -69.76 99.24 118 16 THR A 75 ? ? -59.67 176.64 119 16 MET A 80 ? ? -169.10 118.81 120 16 PRO A 87 ? ? -69.66 -170.86 121 16 LYS A 100 ? ? -95.91 34.34 122 17 PRO A 60 ? ? -69.80 96.82 123 17 ASN A 68 ? ? -175.40 73.33 124 17 PRO A 87 ? ? -69.74 -175.05 125 17 LYS A 100 ? ? -95.62 34.37 126 18 ALA A 39 ? ? -96.64 41.94 127 18 THR A 41 ? ? -54.04 -70.87 128 18 ASP A 42 ? ? -161.92 102.94 129 18 LEU A 64 ? ? -116.49 69.72 130 18 ILE A 65 ? ? -121.01 -59.02 131 18 GLU A 76 ? ? -58.86 -179.49 132 18 PRO A 87 ? ? -69.76 -177.53 133 18 PHE A 88 ? ? -52.12 103.55 134 18 SER A 91 ? ? -93.77 -74.80 135 18 LYS A 100 ? ? -94.39 34.69 136 19 ASP A 2 ? ? -57.12 175.25 137 19 ASN A 68 ? ? -153.81 73.44 138 19 THR A 75 ? ? -56.82 178.43 139 19 PRO A 87 ? ? -69.74 -171.36 140 19 LYS A 100 ? ? -94.33 34.42 141 20 ALA A 16 ? ? -57.52 174.84 142 20 ALA A 25 ? ? -173.12 125.14 143 20 ALA A 52 ? ? -174.61 144.48 144 20 ASN A 68 ? ? -176.08 73.00 145 20 GLU A 76 ? ? -59.16 175.64 146 20 PRO A 87 ? ? -69.74 -177.02 147 20 LYS A 100 ? ? -93.78 35.38 148 20 LYS A 101 ? ? -49.41 165.83 # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'light scattering' ? 2 1 'gel filtration' ? #