HEADER HYDROLASE 03-AUG-17 5ONJ TITLE YNDL IN COMPLEX WITH 5 AMINO ACID (PGA) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: YNDL; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: (2R,3S,4R,5R,6R)-6-((1R,2R,3S,4R,6S)-4,6-DIAMINO-2,3- COMPND 7 DIHYDROXYCYCLOHEXYLOXY)-5-AMINO-2-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN- COMPND 8 3,4-DIOL; COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: B4417_0239; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS PGA-HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RAMASWAMY,M.RASHEED,C.MORELLI,C.CALVIO,B.SUTTON,A.PASTORE REVDAT 5 13-NOV-24 5ONJ 1 REMARK REVDAT 4 17-JAN-24 5ONJ 1 LINK REVDAT 3 16-OCT-19 5ONJ 1 REMARK REVDAT 2 20-MAR-19 5ONJ 1 JRNL REVDAT 1 29-AUG-18 5ONJ 0 JRNL AUTH S.RAMASWAMY,M.RASHEED,C.F.MORELLI,C.CALVIO,B.J.SUTTON, JRNL AUTH 2 A.PASTORE JRNL TITL THE STRUCTURE OF PGHL HYDROLASE BOUND TO ITS SUBSTRATE JRNL TITL 2 POLY-GAMMA-GLUTAMATE. JRNL REF FEBS J. V. 285 4575 2018 JRNL REFN ISSN 1742-464X JRNL PMID 30387270 JRNL DOI 10.1111/FEBS.14688 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.RAMASWAMY,M.RASHEED,C.MORELLI,C.CALVIO,B.SUTTON,A.PASTORE REMARK 1 TITL POLY-GAMMA-GLUTAMATE HYDROLASES STRUCTURE: A POTENTIAL REMARK 1 TITL 2 STRATEGY AGAINST STAPHYLOCOCCUS INFECTIVITY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 20609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT : 1087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.2904 - 3.3925 1.00 2608 140 0.1524 0.1758 REMARK 3 2 3.3925 - 2.6961 1.00 2494 145 0.1723 0.2106 REMARK 3 3 2.6961 - 2.3562 1.00 2471 133 0.1656 0.2013 REMARK 3 4 2.3562 - 2.1412 1.00 2445 135 0.1691 0.1978 REMARK 3 5 2.1412 - 1.9880 1.00 2429 139 0.1647 0.1871 REMARK 3 6 1.9880 - 1.8709 0.99 2399 141 0.1857 0.2637 REMARK 3 7 1.8709 - 1.7773 0.98 2354 142 0.1855 0.2355 REMARK 3 8 1.7773 - 1.7000 0.96 2322 112 0.1815 0.2452 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1709 REMARK 3 ANGLE : 0.784 2311 REMARK 3 CHIRALITY : 0.060 248 REMARK 3 PLANARITY : 0.005 310 REMARK 3 DIHEDRAL : 16.416 1029 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ONJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20613 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 15.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3A9L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM ACETATE, 5% GAMMA-PGA, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.29600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.66400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.82550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.66400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.29600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.82550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 TYR A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 109 NH2 ARG A 190 2.14 REMARK 500 OE1 GLU A 196 O HOH A 401 2.18 REMARK 500 OE1 GLN A 110 O HOH A 402 2.19 REMARK 500 NH1 ARG A 190 O HOH A 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 106 131.30 -176.16 REMARK 500 TYR A 206 72.66 -116.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 620 DISTANCE = 6.46 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 ND1 REMARK 620 2 GLU A 46 OE1 113.8 REMARK 620 3 GLU A 46 OE2 89.5 55.0 REMARK 620 4 HIS A 102 ND1 96.2 117.4 172.1 REMARK 620 5 GGL D 4 OE1 100.3 121.0 80.2 104.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues GGL D 2 and GGL D 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues GGL D 3 and GGL D 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues GGL D 4 and GGL D 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues GGL D 5 and GGL D 6 DBREF1 5ONJ A 1 206 UNP A0A164XNU3_BACIU DBREF2 5ONJ A A0A164XNU3 47 252 DBREF 5ONJ D 1 6 PDB 5ONJ 5ONJ 1 6 SEQADV 5ONJ LEU A 207 UNP A0A164XNU EXPRESSION TAG SEQADV 5ONJ GLU A 208 UNP A0A164XNU EXPRESSION TAG SEQADV 5ONJ HIS A 209 UNP A0A164XNU EXPRESSION TAG SEQADV 5ONJ HIS A 210 UNP A0A164XNU EXPRESSION TAG SEQADV 5ONJ HIS A 211 UNP A0A164XNU EXPRESSION TAG SEQADV 5ONJ HIS A 212 UNP A0A164XNU EXPRESSION TAG SEQADV 5ONJ HIS A 213 UNP A0A164XNU EXPRESSION TAG SEQADV 5ONJ HIS A 214 UNP A0A164XNU EXPRESSION TAG SEQRES 1 A 214 SER SER ILE TYR ALA GLU ASP VAL TYR GLN ASN PHE GLU SEQRES 2 A 214 GLU LEU LYS ASN ASN GLU ASP PRO SER ASP TYR GLY VAL SEQRES 3 A 214 VAL THR LYS GLU THR GLY SER PRO VAL LEU VAL LEU ALA SEQRES 4 A 214 ILE HIS GLY GLY GLY ILE GLU GLY GLY THR SER GLU VAL SEQRES 5 A 214 ALA ARG GLU LEU SER LYS GLU TYR SER MET TYR LEU PHE SEQRES 6 A 214 GLU GLY LEU LYS SER ALA GLY ASN SER VAL LEU HIS ILE SEQRES 7 A 214 THR SER THR HIS PHE ASP GLU PRO ARG ALA LEU LYS MET SEQRES 8 A 214 THR GLY ASN HIS GLU TYR VAL ILE SER LEU HIS GLY TYR SEQRES 9 A 214 ALA GLU GLU ASP GLN GLN ILE GLU VAL GLY GLY THR ASP SEQRES 10 A 214 ARG VAL ARG ALA ALA ASP LEU VAL GLU LYS LEU GLN HIS SEQRES 11 A 214 ALA GLY PHE PRO ALA VAL LEU LEU ASN MET ASP HIS PRO SEQRES 12 A 214 HIS ALA GLY VAL SER PRO ASN ASN ILE ALA ASN LYS SER SEQRES 13 A 214 LYS THR GLY LEU SER ILE GLN ILE GLU MET SER THR GLY SEQRES 14 A 214 PHE ARG LYS SER LEU PHE GLY ILE PHE SER LEU LYS SER SEQRES 15 A 214 ARG ALA VAL THR GLN ASN GLU ARG PHE TYR GLU PHE THR SEQRES 16 A 214 GLU VAL MET PHE ARG PHE LEU LYS ASN SER TYR LEU GLU SEQRES 17 A 214 HIS HIS HIS HIS HIS HIS SEQRES 1 D 6 GLU GGL GGL GGL GGL GGL HET GGL D 2 9 HET GGL D 3 9 HET GGL D 4 9 HET GGL D 5 9 HET GGL D 6 10 HET ZN A 301 1 HETNAM GGL GAMMA-L-GLUTAMIC ACID HETNAM ZN ZINC ION HETSYN GGL L-GLUTAMIC ACID FORMUL 2 GGL 5(C5 H9 N O4) FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *228(H2 O) HELIX 1 AA1 ASN A 11 GLU A 19 1 9 HELIX 2 AA2 ASP A 20 SER A 22 5 3 HELIX 3 AA3 GLY A 48 SER A 57 1 10 HELIX 4 AA4 GLY A 72 HIS A 77 5 6 HELIX 5 AA5 THR A 79 PHE A 83 5 5 HELIX 6 AA6 GLU A 85 ASN A 94 1 10 HELIX 7 AA7 ASP A 117 ALA A 131 1 15 HELIX 8 AA8 ASN A 151 LYS A 155 5 5 HELIX 9 AA9 THR A 168 SER A 173 1 6 HELIX 10 AB1 ARG A 183 GLN A 187 5 5 HELIX 11 AB2 ASN A 188 TYR A 206 1 19 SHEET 1 AA1 7 TYR A 24 LYS A 29 0 SHEET 2 AA1 7 SER A 61 GLY A 67 -1 O LEU A 64 N VAL A 27 SHEET 3 AA1 7 VAL A 35 GLY A 43 1 N VAL A 37 O SER A 61 SHEET 4 AA1 7 TYR A 97 TYR A 104 1 O ILE A 99 N LEU A 38 SHEET 5 AA1 7 LEU A 160 SER A 167 1 O ILE A 162 N SER A 100 SHEET 6 AA1 7 ILE A 111 GLY A 114 -1 N GLU A 112 O GLU A 165 SHEET 7 AA1 7 ALA A 135 LEU A 137 1 O VAL A 136 N VAL A 113 LINK CD GLU D 1 N GGL D 2 1555 1555 1.34 LINK CD GGL D 2 N GGL D 3 1555 1555 1.34 LINK CD GGL D 3 N GGL D 4 1555 1555 1.34 LINK CD GGL D 4 N GGL D 5 1555 1555 1.35 LINK CD GGL D 5 N GGL D 6 1555 1555 1.34 LINK ND1 HIS A 41 ZN ZN A 301 1555 1555 1.97 LINK OE1 GLU A 46 ZN ZN A 301 1555 1555 2.03 LINK OE2 GLU A 46 ZN ZN A 301 1555 1555 2.60 LINK ND1 HIS A 102 ZN ZN A 301 1555 1555 2.15 LINK ZN ZN A 301 OE1 GGL D 4 1555 1555 2.11 SITE 1 AC1 4 HIS A 41 GLU A 46 HIS A 102 GGL D 4 SITE 1 AC2 18 GLY A 44 ILE A 45 GLU A 46 GLY A 47 SITE 2 AC2 18 GLY A 72 ASN A 73 SER A 74 GLY A 103 SITE 3 AC2 18 TYR A 104 THR A 168 ARG A 171 LYS A 181 SITE 4 AC2 18 VAL A 185 GLU D 1 GGL D 4 HOH D 102 SITE 5 AC2 18 HOH D 106 HOH D 107 SITE 1 AC3 16 HIS A 41 ILE A 45 GLU A 46 GLY A 47 SITE 2 AC3 16 HIS A 77 HIS A 102 GLY A 103 TYR A 104 SITE 3 AC3 16 ALA A 105 THR A 168 ARG A 171 LYS A 181 SITE 4 AC3 16 ZN A 301 GGL D 2 GGL D 5 HOH D 106 SITE 1 AC4 20 HIS A 41 GLU A 46 HIS A 77 THR A 79 SITE 2 AC4 20 SER A 80 HIS A 102 GLY A 103 TYR A 104 SITE 3 AC4 20 ALA A 105 HIS A 144 ALA A 145 GLY A 146 SITE 4 AC4 20 ASN A 151 GLN A 163 GLU A 165 LYS A 181 SITE 5 AC4 20 ZN A 301 GGL D 3 GGL D 6 HOH D 105 SITE 1 AC5 19 HIS A 41 HIS A 77 THR A 79 SER A 80 SITE 2 AC5 19 HIS A 102 HIS A 144 ALA A 145 GLY A 146 SITE 3 AC5 19 VAL A 147 SER A 148 ASN A 151 GLN A 163 SITE 4 AC5 19 GLU A 165 HOH A 476 HOH A 518 GGL D 4 SITE 5 AC5 19 HOH D 103 HOH D 104 HOH D 105 CRYST1 38.592 47.651 99.328 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025912 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010068 0.00000