HEADER HYDROLASE 05-AUG-17 5OO2 TITLE CRYSTAL STRUCTURE OF MYCOLICIBACTERIUM HASSIACUM GLUCOSYLGLYCERATE TITLE 2 HYDROLASE (MHGGH) E419A VARIANT IN COMPLEX WITH GLUCOSYLGLYCOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM HASSIACUM (STRAIN DSM 44199 / CIP SOURCE 3 105218 / JCM 12690 / 3849); SOURCE 4 ORGANISM_TAXID: 1122247; SOURCE 5 STRAIN: DSM 44199 / CIP 105218 / JCM 12690 / 3849; SOURCE 6 GENE: C731_0006; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYCOBACTERIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.B.CEREIJA,S.MACEDO-RIBEIRO,P.J.B.PEREIRA REVDAT 5 17-JAN-24 5OO2 1 REMARK HETSYN REVDAT 4 29-JUL-20 5OO2 1 COMPND REMARK HETNAM SITE REVDAT 4 2 1 ATOM REVDAT 3 31-JUL-19 5OO2 1 JRNL REVDAT 2 15-MAY-19 5OO2 1 TITLE JRNL REVDAT 1 29-AUG-18 5OO2 0 JRNL AUTH T.B.CEREIJA,S.ALARICO,E.C.LOURENCO,J.A.MANSO,M.R.VENTURA, JRNL AUTH 2 N.EMPADINHAS,S.MACEDO-RIBEIRO,P.J.B.PEREIRA JRNL TITL THE STRUCTURAL CHARACTERIZATION OF A GLUCOSYLGLYCERATE JRNL TITL 2 HYDROLASE PROVIDES INSIGHTS INTO THE MOLECULAR MECHANISM OF JRNL TITL 3 MYCOBACTERIAL RECOVERY FROM NITROGEN STARVATION. JRNL REF IUCRJ V. 6 572 2019 JRNL REFN ESSN 2052-2525 JRNL PMID 31316802 JRNL DOI 10.1107/S2052252519005372 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 75046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 3625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9211 - 6.0967 1.00 2950 166 0.1629 0.1733 REMARK 3 2 6.0967 - 4.8415 1.00 2808 174 0.1574 0.1996 REMARK 3 3 4.8415 - 4.2301 0.99 2794 131 0.1236 0.1626 REMARK 3 4 4.2301 - 3.8437 1.00 2788 123 0.1279 0.1609 REMARK 3 5 3.8437 - 3.5683 1.00 2752 174 0.1340 0.1771 REMARK 3 6 3.5683 - 3.3580 1.00 2736 141 0.1475 0.1934 REMARK 3 7 3.3580 - 3.1899 1.00 2760 156 0.1588 0.1854 REMARK 3 8 3.1899 - 3.0511 1.00 2735 148 0.1517 0.1994 REMARK 3 9 3.0511 - 2.9337 1.00 2754 129 0.1595 0.2171 REMARK 3 10 2.9337 - 2.8325 1.00 2742 138 0.1518 0.1743 REMARK 3 11 2.8325 - 2.7439 1.00 2734 135 0.1617 0.2300 REMARK 3 12 2.7439 - 2.6655 1.00 2717 152 0.1716 0.2008 REMARK 3 13 2.6655 - 2.5953 1.00 2771 119 0.1735 0.2319 REMARK 3 14 2.5953 - 2.5320 1.00 2730 127 0.1831 0.2393 REMARK 3 15 2.5320 - 2.4745 1.00 2739 119 0.1826 0.2390 REMARK 3 16 2.4745 - 2.4218 1.00 2729 131 0.1918 0.2511 REMARK 3 17 2.4218 - 2.3734 1.00 2700 150 0.1933 0.2488 REMARK 3 18 2.3734 - 2.3286 1.00 2696 173 0.2065 0.2599 REMARK 3 19 2.3286 - 2.2870 1.00 2710 125 0.2113 0.3032 REMARK 3 20 2.2870 - 2.2482 1.00 2731 147 0.2259 0.2909 REMARK 3 21 2.2482 - 2.2120 1.00 2736 128 0.2304 0.2997 REMARK 3 22 2.2120 - 2.1780 1.00 2720 124 0.2386 0.2870 REMARK 3 23 2.1780 - 2.1459 1.00 2727 134 0.2559 0.3054 REMARK 3 24 2.1459 - 2.1157 1.00 2751 95 0.2561 0.2992 REMARK 3 25 2.1157 - 2.0871 1.00 2687 140 0.2631 0.2952 REMARK 3 26 2.0871 - 2.0600 1.00 2724 146 0.2793 0.3180 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7668 REMARK 3 ANGLE : 1.030 10458 REMARK 3 CHIRALITY : 0.059 1077 REMARK 3 PLANARITY : 0.007 1370 REMARK 3 DIHEDRAL : 20.078 4507 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.4405 15.4973 -30.7218 REMARK 3 T TENSOR REMARK 3 T11: 0.3519 T22: 0.2611 REMARK 3 T33: 0.2576 T12: -0.0416 REMARK 3 T13: -0.0091 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.9580 L22: 5.4214 REMARK 3 L33: 4.6211 L12: -0.3421 REMARK 3 L13: 0.0079 L23: 3.0532 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.2811 S13: 0.0399 REMARK 3 S21: 0.7372 S22: 0.0141 S23: -0.1363 REMARK 3 S31: 0.1013 S32: 0.1573 S33: 0.0020 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.8513 30.5217 -36.2683 REMARK 3 T TENSOR REMARK 3 T11: 0.4025 T22: 0.2387 REMARK 3 T33: 0.3013 T12: -0.0067 REMARK 3 T13: -0.0102 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 2.1699 L22: 2.4608 REMARK 3 L33: 1.9238 L12: 0.7686 REMARK 3 L13: 0.4043 L23: 0.2063 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: -0.1898 S13: 0.1473 REMARK 3 S21: 0.3415 S22: -0.0349 S23: -0.2404 REMARK 3 S31: -0.3293 S32: 0.1222 S33: 0.0631 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.7566 21.4633 -50.9892 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.2546 REMARK 3 T33: 0.3144 T12: -0.0504 REMARK 3 T13: 0.0440 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.8601 L22: 2.5536 REMARK 3 L33: 2.2811 L12: -0.1337 REMARK 3 L13: 0.7137 L23: -0.2664 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: 0.1217 S13: 0.1096 REMARK 3 S21: -0.0677 S22: -0.0434 S23: -0.3771 REMARK 3 S31: -0.1681 S32: 0.3066 S33: 0.0586 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.7777 6.4371 -80.2170 REMARK 3 T TENSOR REMARK 3 T11: 0.3181 T22: 0.2981 REMARK 3 T33: 0.2999 T12: 0.0766 REMARK 3 T13: -0.0123 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 1.3680 L22: 7.1081 REMARK 3 L33: 6.0982 L12: -1.8787 REMARK 3 L13: 1.6657 L23: -3.1210 REMARK 3 S TENSOR REMARK 3 S11: 0.2872 S12: 0.3080 S13: -0.1873 REMARK 3 S21: -0.7702 S22: -0.1262 S23: 0.3364 REMARK 3 S31: 0.3456 S32: -0.1624 S33: -0.1415 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.7387 19.2570 -89.4490 REMARK 3 T TENSOR REMARK 3 T11: 0.5067 T22: 0.4693 REMARK 3 T33: 0.3096 T12: 0.1678 REMARK 3 T13: 0.0117 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 5.3967 L22: 1.0600 REMARK 3 L33: 7.1883 L12: -0.5789 REMARK 3 L13: 3.3727 L23: -0.0947 REMARK 3 S TENSOR REMARK 3 S11: 0.3365 S12: 1.0490 S13: -0.1386 REMARK 3 S21: -0.4868 S22: -0.2501 S23: 0.1068 REMARK 3 S31: -0.1725 S32: -0.0530 S33: -0.1028 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.2541 25.9477 -82.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.5332 T22: 0.3827 REMARK 3 T33: 0.2256 T12: 0.1384 REMARK 3 T13: -0.0119 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 7.7913 L22: 1.9791 REMARK 3 L33: 1.6103 L12: -0.9790 REMARK 3 L13: -0.6067 L23: -0.0735 REMARK 3 S TENSOR REMARK 3 S11: 0.1879 S12: 0.5825 S13: 0.2929 REMARK 3 S21: -0.4643 S22: -0.1784 S23: 0.0800 REMARK 3 S31: -0.4153 S32: -0.1756 S33: -0.0075 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -73.7817 6.5028 -91.2702 REMARK 3 T TENSOR REMARK 3 T11: 1.0186 T22: 1.4394 REMARK 3 T33: 1.0701 T12: 0.0854 REMARK 3 T13: -0.2743 T23: -0.1700 REMARK 3 L TENSOR REMARK 3 L11: 0.1017 L22: 0.2383 REMARK 3 L33: 0.2315 L12: 0.0936 REMARK 3 L13: -0.1429 L23: -0.2004 REMARK 3 S TENSOR REMARK 3 S11: -0.5303 S12: -1.3175 S13: 0.5461 REMARK 3 S21: 0.0986 S22: 0.0950 S23: -0.4759 REMARK 3 S31: 0.3143 S32: -1.2288 S33: 0.3062 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 219 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -71.8007 23.3279 -93.9481 REMARK 3 T TENSOR REMARK 3 T11: 0.6980 T22: 0.9165 REMARK 3 T33: 0.6243 T12: 0.3405 REMARK 3 T13: -0.2480 T23: -0.0809 REMARK 3 L TENSOR REMARK 3 L11: 3.1064 L22: 4.1041 REMARK 3 L33: 8.9575 L12: 2.3265 REMARK 3 L13: -0.6981 L23: 3.8966 REMARK 3 S TENSOR REMARK 3 S11: 0.2045 S12: 1.2492 S13: -0.1873 REMARK 3 S21: -0.1710 S22: -0.2465 S23: 0.1873 REMARK 3 S31: 0.0012 S32: -0.7930 S33: -0.0036 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 250 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -61.3273 30.8931 -73.3035 REMARK 3 T TENSOR REMARK 3 T11: 0.4790 T22: 0.2906 REMARK 3 T33: 0.3171 T12: 0.1437 REMARK 3 T13: -0.0235 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 4.0215 L22: 1.5194 REMARK 3 L33: 1.9531 L12: 0.6734 REMARK 3 L13: -1.1041 L23: -0.2166 REMARK 3 S TENSOR REMARK 3 S11: 0.2044 S12: 0.2234 S13: 0.3114 REMARK 3 S21: -0.1470 S22: -0.1679 S23: 0.2066 REMARK 3 S31: -0.4556 S32: -0.2124 S33: -0.0419 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 321 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.3860 11.5134 -66.6291 REMARK 3 T TENSOR REMARK 3 T11: 0.2512 T22: 0.2631 REMARK 3 T33: 0.3037 T12: 0.0222 REMARK 3 T13: -0.0168 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.1641 L22: 3.4292 REMARK 3 L33: 2.3864 L12: -0.5522 REMARK 3 L13: -0.1876 L23: 0.9598 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: 0.0822 S13: -0.3508 REMARK 3 S21: -0.0227 S22: -0.1020 S23: 0.3391 REMARK 3 S31: 0.0424 S32: -0.2357 S33: 0.0701 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200005908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75133 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 45.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-BICINE PH 8.5, AMINO ACIDS, PEG REMARK 280 4000, GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.47650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.83800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.47650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.83800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -86.95300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 818 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 203 CB CG CD OE1 NE2 REMARK 480 ARG B 204 CB CG CD NE CZ NH1 NH2 REMARK 480 ASP B 206 CB CG OD1 OD2 REMARK 480 ASN B 207 CB CG OD1 ND2 REMARK 480 ILE B 209 CB CG1 CG2 CD1 REMARK 480 ILE B 210 CB CG1 CG2 CD1 REMARK 480 ARG B 216 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 666 O HOH A 837 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 72 OD1 ASP B 102 1556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 182 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 37 41.86 -84.83 REMARK 500 SER A 55 107.07 -162.62 REMARK 500 MET A 181 75.55 -117.90 REMARK 500 GLU A 319 66.27 -109.56 REMARK 500 PHE A 349 -105.74 -127.89 REMARK 500 TYR A 375 -109.10 62.29 REMARK 500 PRO B 5 1.12 -68.01 REMARK 500 PRO B 37 40.08 -81.48 REMARK 500 SER B 55 109.36 -160.14 REMARK 500 ASN B 83 98.25 -52.47 REMARK 500 ASP B 86 -128.58 -106.19 REMARK 500 ALA B 96 18.80 59.97 REMARK 500 THR B 114 -164.88 -112.60 REMARK 500 GLN B 215 47.73 -107.81 REMARK 500 GLU B 319 71.42 -110.53 REMARK 500 PHE B 349 -110.57 -133.28 REMARK 500 TYR B 375 -107.38 50.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 5OO2 A 1 446 UNP K5BDL0 K5BDL0_MYCHD 1 446 DBREF 5OO2 B 1 446 UNP K5BDL0 K5BDL0_MYCHD 1 446 SEQADV 5OO2 GLY A -1 UNP K5BDL0 EXPRESSION TAG SEQADV 5OO2 ALA A 0 UNP K5BDL0 EXPRESSION TAG SEQADV 5OO2 ALA A 419 UNP K5BDL0 GLU 419 ENGINEERED MUTATION SEQADV 5OO2 GLY B -1 UNP K5BDL0 EXPRESSION TAG SEQADV 5OO2 ALA B 0 UNP K5BDL0 EXPRESSION TAG SEQADV 5OO2 ALA B 419 UNP K5BDL0 GLU 419 ENGINEERED MUTATION SEQRES 1 A 448 GLY ALA MET PRO HIS ASP PRO SER PHE THR PRO THR GLN SEQRES 2 A 448 LEU ALA ALA ARG ALA ALA TYR LEU LEU ARG GLY ASN ASP SEQRES 3 A 448 LEU GLY THR MET THR THR ALA ALA PRO LEU LEU TYR PRO SEQRES 4 A 448 HIS MET TRP SER TRP ASP ALA ALA PHE VAL ALA ILE GLY SEQRES 5 A 448 LEU ALA PRO LEU SER VAL GLU ARG ALA VAL VAL GLU LEU SEQRES 6 A 448 ASP THR LEU LEU SER ALA GLN TRP ARG ASN GLY MET ILE SEQRES 7 A 448 PRO HIS ILE VAL PHE ALA ASN GLY VAL ASP GLY TYR PHE SEQRES 8 A 448 PRO GLY PRO ALA ARG TRP ALA THR ALA THR LEU ALA ASP SEQRES 9 A 448 ASN ALA PRO ARG ASN ARG LEU THR SER GLY ILE THR GLN SEQRES 10 A 448 PRO PRO VAL HIS ALA ILE ALA VAL GLN ARG ILE LEU GLU SEQRES 11 A 448 HIS ALA ARG THR ARG GLY ARG SER THR ARG ALA VAL ALA SEQRES 12 A 448 GLU ALA PHE LEU ASP ARG ARG TRP GLY ASP LEU MET ARG SEQRES 13 A 448 TRP HIS ARG TRP LEU ALA GLU CYS ARG ASP ARG ASN GLU SEQRES 14 A 448 ARG GLY ARG ILE THR LEU TYR HIS GLY TRP GLU SER GLY SEQRES 15 A 448 MET ASP ASN SER PRO ARG TRP ASP SER ALA TYR ALA ASN SEQRES 16 A 448 VAL VAL PRO GLY LYS LEU PRO GLU TYR GLN ARG ALA ASP SEQRES 17 A 448 ASN VAL ILE ILE THR ASP PRO SER GLN ARG PRO SER ASP SEQRES 18 A 448 GLY GLU TYR ASP ARG TYR LEU TRP LEU LEU GLU GLU MET SEQRES 19 A 448 LYS ALA VAL ARG TYR ASP ASP GLU ARG LEU PRO SER VAL SEQRES 20 A 448 MET SER PHE GLN VAL GLU ASP VAL PHE PHE SER ALA ILE SEQRES 21 A 448 PHE SER VAL ALA CYS GLN VAL LEU ALA GLU ILE GLY GLU SEQRES 22 A 448 ASP TYR LYS ARG PRO HIS ALA ASP VAL LYS ASP LEU TYR SEQRES 23 A 448 LEU TRP ALA GLU ARG PHE ARG ALA GLY VAL VAL GLU THR SEQRES 24 A 448 THR ASP GLN ARG THR GLY ALA ALA ARG ASP PHE ASP VAL SEQRES 25 A 448 LEU ALA GLU LYS TRP LEU VAL THR GLU THR ALA ALA GLN SEQRES 26 A 448 PHE ALA PRO LEU LEU CYS GLY GLY LEU PRO HIS ASP ARG SEQRES 27 A 448 GLU ARG ALA LEU LEU LYS LEU LEU GLU GLY PRO ARG PHE SEQRES 28 A 448 CYS GLY HIS PRO ASP LEU LYS TYR GLY LEU ILE PRO SER SEQRES 29 A 448 THR SER PRO VAL SER ARG ASP PHE ARG PRO ARG GLU TYR SEQRES 30 A 448 TRP ARG GLY PRO VAL TRP PRO VAL LEU THR TRP LEU PHE SEQRES 31 A 448 SER TRP CYS PHE ALA ARG ARG GLY TRP ALA GLU ARG ALA SEQRES 32 A 448 ARG LEU LEU ARG GLN GLU GLY LEU ARG GLN ALA SER ASP SEQRES 33 A 448 GLY SER PHE ALA ALA TYR TYR GLU PRO PHE THR GLY GLU SEQRES 34 A 448 PRO LEU GLY SER MET GLN GLN SER TRP THR ALA ALA ALA SEQRES 35 A 448 VAL LEU ASP TRP LEU GLY SEQRES 1 B 448 GLY ALA MET PRO HIS ASP PRO SER PHE THR PRO THR GLN SEQRES 2 B 448 LEU ALA ALA ARG ALA ALA TYR LEU LEU ARG GLY ASN ASP SEQRES 3 B 448 LEU GLY THR MET THR THR ALA ALA PRO LEU LEU TYR PRO SEQRES 4 B 448 HIS MET TRP SER TRP ASP ALA ALA PHE VAL ALA ILE GLY SEQRES 5 B 448 LEU ALA PRO LEU SER VAL GLU ARG ALA VAL VAL GLU LEU SEQRES 6 B 448 ASP THR LEU LEU SER ALA GLN TRP ARG ASN GLY MET ILE SEQRES 7 B 448 PRO HIS ILE VAL PHE ALA ASN GLY VAL ASP GLY TYR PHE SEQRES 8 B 448 PRO GLY PRO ALA ARG TRP ALA THR ALA THR LEU ALA ASP SEQRES 9 B 448 ASN ALA PRO ARG ASN ARG LEU THR SER GLY ILE THR GLN SEQRES 10 B 448 PRO PRO VAL HIS ALA ILE ALA VAL GLN ARG ILE LEU GLU SEQRES 11 B 448 HIS ALA ARG THR ARG GLY ARG SER THR ARG ALA VAL ALA SEQRES 12 B 448 GLU ALA PHE LEU ASP ARG ARG TRP GLY ASP LEU MET ARG SEQRES 13 B 448 TRP HIS ARG TRP LEU ALA GLU CYS ARG ASP ARG ASN GLU SEQRES 14 B 448 ARG GLY ARG ILE THR LEU TYR HIS GLY TRP GLU SER GLY SEQRES 15 B 448 MET ASP ASN SER PRO ARG TRP ASP SER ALA TYR ALA ASN SEQRES 16 B 448 VAL VAL PRO GLY LYS LEU PRO GLU TYR GLN ARG ALA ASP SEQRES 17 B 448 ASN VAL ILE ILE THR ASP PRO SER GLN ARG PRO SER ASP SEQRES 18 B 448 GLY GLU TYR ASP ARG TYR LEU TRP LEU LEU GLU GLU MET SEQRES 19 B 448 LYS ALA VAL ARG TYR ASP ASP GLU ARG LEU PRO SER VAL SEQRES 20 B 448 MET SER PHE GLN VAL GLU ASP VAL PHE PHE SER ALA ILE SEQRES 21 B 448 PHE SER VAL ALA CYS GLN VAL LEU ALA GLU ILE GLY GLU SEQRES 22 B 448 ASP TYR LYS ARG PRO HIS ALA ASP VAL LYS ASP LEU TYR SEQRES 23 B 448 LEU TRP ALA GLU ARG PHE ARG ALA GLY VAL VAL GLU THR SEQRES 24 B 448 THR ASP GLN ARG THR GLY ALA ALA ARG ASP PHE ASP VAL SEQRES 25 B 448 LEU ALA GLU LYS TRP LEU VAL THR GLU THR ALA ALA GLN SEQRES 26 B 448 PHE ALA PRO LEU LEU CYS GLY GLY LEU PRO HIS ASP ARG SEQRES 27 B 448 GLU ARG ALA LEU LEU LYS LEU LEU GLU GLY PRO ARG PHE SEQRES 28 B 448 CYS GLY HIS PRO ASP LEU LYS TYR GLY LEU ILE PRO SER SEQRES 29 B 448 THR SER PRO VAL SER ARG ASP PHE ARG PRO ARG GLU TYR SEQRES 30 B 448 TRP ARG GLY PRO VAL TRP PRO VAL LEU THR TRP LEU PHE SEQRES 31 B 448 SER TRP CYS PHE ALA ARG ARG GLY TRP ALA GLU ARG ALA SEQRES 32 B 448 ARG LEU LEU ARG GLN GLU GLY LEU ARG GLN ALA SER ASP SEQRES 33 B 448 GLY SER PHE ALA ALA TYR TYR GLU PRO PHE THR GLY GLU SEQRES 34 B 448 PRO LEU GLY SER MET GLN GLN SER TRP THR ALA ALA ALA SEQRES 35 B 448 VAL LEU ASP TRP LEU GLY HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET 9YW A 507 16 HET SER A 508 7 HET GOL B 501 6 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HET GOL B 505 6 HET 9YW B 506 16 HETNAM GOL GLYCEROL HETNAM 9YW (ALPHA-D-GLUCOPYRANOSYLOXY)ACETIC ACID HETNAM SER SERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 9YW GLUCOSYLGLYCOLATE; (ALPHA-D-GLUCOSYLOXY)ACETIC ACID; HETSYN 2 9YW (D-GLUCOSYLOXY)ACETIC ACID; (GLUCOSYLOXY)ACETIC ACID FORMUL 3 GOL 11(C3 H8 O3) FORMUL 9 9YW 2(C8 H14 O8) FORMUL 10 SER C3 H7 N O3 FORMUL 17 HOH *426(H2 O) HELIX 1 AA1 THR A 8 ASN A 23 1 16 HELIX 2 AA2 SER A 41 ALA A 52 1 12 HELIX 3 AA3 SER A 55 ALA A 69 1 15 HELIX 4 AA4 GLY A 91 ALA A 96 1 6 HELIX 5 AA5 ALA A 96 ALA A 101 1 6 HELIX 6 AA6 VAL A 118 THR A 132 1 15 HELIX 7 AA7 GLY A 134 ARG A 163 1 30 HELIX 8 AA8 HIS A 175 GLY A 180 5 6 HELIX 9 AA9 SER A 184 ARG A 186 5 3 HELIX 10 AB1 TRP A 187 ASN A 193 1 7 HELIX 11 AB2 ALA A 205 ILE A 210 1 6 HELIX 12 AB3 ASP A 212 ARG A 216 5 5 HELIX 13 AB4 SER A 218 VAL A 235 1 18 HELIX 14 AB5 ARG A 241 MET A 246 1 6 HELIX 15 AB6 VAL A 253 TYR A 273 1 21 HELIX 16 AB7 PRO A 276 THR A 297 1 22 HELIX 17 AB8 THR A 320 GLN A 323 5 4 HELIX 18 AB9 PHE A 324 GLY A 330 1 7 HELIX 19 AC1 PRO A 333 GLY A 346 1 14 HELIX 20 AC2 TRP A 381 GLY A 396 1 16 HELIX 21 AC3 TRP A 397 SER A 413 1 17 HELIX 22 AC4 GLN A 434 GLY A 446 1 13 HELIX 23 AC5 THR B 8 ASN B 23 1 16 HELIX 24 AC6 SER B 41 ALA B 52 1 12 HELIX 25 AC7 SER B 55 SER B 68 1 14 HELIX 26 AC8 GLY B 91 ALA B 96 1 6 HELIX 27 AC9 ALA B 96 ALA B 101 1 6 HELIX 28 AD1 VAL B 118 THR B 132 1 15 HELIX 29 AD2 GLY B 134 ARG B 163 1 30 HELIX 30 AD3 HIS B 175 GLY B 180 5 6 HELIX 31 AD4 SER B 184 ARG B 186 5 3 HELIX 32 AD5 TRP B 187 ASN B 193 1 7 HELIX 33 AD6 ALA B 205 ILE B 210 1 6 HELIX 34 AD7 ASP B 212 ARG B 216 5 5 HELIX 35 AD8 SER B 218 VAL B 235 1 18 HELIX 36 AD9 ARG B 241 MET B 246 1 6 HELIX 37 AE1 VAL B 253 TYR B 273 1 21 HELIX 38 AE2 PRO B 276 THR B 297 1 22 HELIX 39 AE3 THR B 320 GLN B 323 5 4 HELIX 40 AE4 PHE B 324 GLY B 330 1 7 HELIX 41 AE5 PRO B 333 GLY B 346 1 14 HELIX 42 AE6 TRP B 381 GLY B 396 1 16 HELIX 43 AE7 TRP B 397 SER B 413 1 17 HELIX 44 AE8 GLN B 434 GLY B 446 1 13 SHEET 1 AA1 2 MET A 39 TRP A 40 0 SHEET 2 AA1 2 ILE A 79 VAL A 80 -1 O VAL A 80 N MET A 39 SHEET 1 AA2 4 ILE A 171 LEU A 173 0 SHEET 2 AA2 4 VAL A 250 ASP A 252 -1 O VAL A 250 N LEU A 173 SHEET 3 AA2 4 ASP A 307 ASP A 309 -1 O PHE A 308 N GLU A 251 SHEET 4 AA2 4 LYS A 314 LEU A 316 -1 O LEU A 316 N ASP A 307 SHEET 1 AA3 2 TYR A 420 TYR A 421 0 SHEET 2 AA3 2 PRO A 428 LEU A 429 -1 O LEU A 429 N TYR A 420 SHEET 1 AA4 3 MET B 39 TRP B 40 0 SHEET 2 AA4 3 ILE B 79 PHE B 81 -1 O VAL B 80 N MET B 39 SHEET 3 AA4 3 LEU B 109 THR B 110 -1 O LEU B 109 N PHE B 81 SHEET 1 AA5 4 ILE B 171 LEU B 173 0 SHEET 2 AA5 4 VAL B 250 ASP B 252 -1 O VAL B 250 N LEU B 173 SHEET 3 AA5 4 ASP B 307 ASP B 309 -1 O PHE B 308 N GLU B 251 SHEET 4 AA5 4 LYS B 314 LEU B 316 -1 O LEU B 316 N ASP B 307 SHEET 1 AA6 2 TYR B 420 TYR B 421 0 SHEET 2 AA6 2 PRO B 428 LEU B 429 -1 O LEU B 429 N TYR B 420 CISPEP 1 PHE A 89 PRO A 90 0 8.83 CISPEP 2 PHE B 89 PRO B 90 0 6.15 CRYST1 86.953 157.676 87.556 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011500 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011421 0.00000