HEADER OXIDOREDUCTASE 09-AUG-17 5OP8 TITLE FACTOR INHIBITING HIF (FIH) IN COMPLEX WITH ZINC AND MOLIDUSTAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ON-HEME, DIOXYGENASE, OXYGENASE, DNA-BINDING, METAL-BINDING, KEYWDS 2 TRANSCRIPTION, HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, KEYWDS 3 ASPARAGINYL/ASPARTYL HYDROXYLASE, EPIGENETIC REGULATION, SIGNALING, KEYWDS 4 ARD, BETA-HYDROXYLATION, ACTIVATOR-INHIBITOR, OXIDOREDUCTASE-PEPTIDE KEYWDS 5 COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.M.LEISSING,C.J.SCHOFIELD,I.J.CLIFTON,X.LU REVDAT 3 17-JAN-24 5OP8 1 REMARK REVDAT 2 21-FEB-18 5OP8 1 JRNL REVDAT 1 18-OCT-17 5OP8 0 JRNL AUTH T.L.YEH,T.M.LEISSING,M.I.ABBOUD,C.C.THINNES,O.ATASOYLU, JRNL AUTH 2 J.P.HOLT-MARTYN,D.ZHANG,A.TUMBER,K.LIPPL,C.T.LOHANS, JRNL AUTH 3 I.K.H.LEUNG,H.MORCRETTE,I.J.CLIFTON,T.D.W.CLARIDGE, JRNL AUTH 4 A.KAWAMURA,E.FLASHMAN,X.LU,P.J.RATCLIFFE,R.CHOWDHURY, JRNL AUTH 5 C.W.PUGH,C.J.SCHOFIELD JRNL TITL MOLECULAR AND CELLULAR MECHANISMS OF HIF PROLYL HYDROXYLASE JRNL TITL 2 INHIBITORS IN CLINICAL TRIALS. JRNL REF CHEM SCI V. 8 7651 2017 JRNL REFN ISSN 2041-6520 JRNL PMID 29435217 JRNL DOI 10.1039/C7SC02103H REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3895 - 4.7787 1.00 2890 143 0.1995 0.2015 REMARK 3 2 4.7787 - 3.7953 1.00 2732 157 0.1545 0.1721 REMARK 3 3 3.7953 - 3.3163 1.00 2706 137 0.1855 0.1973 REMARK 3 4 3.3163 - 3.0133 1.00 2683 139 0.2209 0.2699 REMARK 3 5 3.0133 - 2.7975 1.00 2661 137 0.2275 0.2337 REMARK 3 6 2.7975 - 2.6327 1.00 2657 144 0.2249 0.2679 REMARK 3 7 2.6327 - 2.5009 1.00 2648 131 0.2407 0.2560 REMARK 3 8 2.5009 - 2.3921 1.00 2643 112 0.2519 0.2687 REMARK 3 9 2.3921 - 2.3000 1.00 2660 140 0.2992 0.3466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2807 REMARK 3 ANGLE : 0.664 3825 REMARK 3 CHIRALITY : 0.045 388 REMARK 3 PLANARITY : 0.004 505 REMARK 3 DIHEDRAL : 14.400 1637 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7542 32.3917 -22.6803 REMARK 3 T TENSOR REMARK 3 T11: 0.4212 T22: 0.7038 REMARK 3 T33: 0.7714 T12: -0.0088 REMARK 3 T13: 0.0272 T23: 0.2407 REMARK 3 L TENSOR REMARK 3 L11: 1.1676 L22: 1.3483 REMARK 3 L33: 1.6796 L12: -1.2050 REMARK 3 L13: 0.9018 L23: -0.5825 REMARK 3 S TENSOR REMARK 3 S11: -0.2372 S12: 0.5541 S13: 0.8352 REMARK 3 S21: -0.0950 S22: -0.2875 S23: -0.2103 REMARK 3 S31: -0.3297 S32: 0.4062 S33: 0.4506 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5219 23.6954 -15.4830 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.5592 REMARK 3 T33: 0.4760 T12: 0.0156 REMARK 3 T13: 0.0379 T23: 0.1085 REMARK 3 L TENSOR REMARK 3 L11: 2.6903 L22: 2.5551 REMARK 3 L33: 3.2973 L12: -0.1800 REMARK 3 L13: 1.7043 L23: 1.2043 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: -0.0965 S13: 0.2767 REMARK 3 S21: 0.1371 S22: -0.2677 S23: 0.2570 REMARK 3 S31: 0.0877 S32: -0.5167 S33: 0.2130 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9739 22.9505 6.8398 REMARK 3 T TENSOR REMARK 3 T11: 0.6951 T22: 0.8865 REMARK 3 T33: 0.6212 T12: -0.0277 REMARK 3 T13: -0.0672 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.3776 L22: 2.8158 REMARK 3 L33: 0.8877 L12: -1.7980 REMARK 3 L13: 0.2957 L23: -0.9751 REMARK 3 S TENSOR REMARK 3 S11: -0.5287 S12: -0.4107 S13: 0.3707 REMARK 3 S21: 0.9182 S22: 0.1888 S23: -0.7629 REMARK 3 S31: -0.2188 S32: -0.1587 S33: 0.3778 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1297 29.8295 -2.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.6422 T22: 0.8905 REMARK 3 T33: 0.4312 T12: 0.1278 REMARK 3 T13: 0.1833 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.3807 L22: 2.3705 REMARK 3 L33: 3.3010 L12: -0.2346 REMARK 3 L13: 1.8978 L23: -0.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.1190 S12: -1.0073 S13: 0.5733 REMARK 3 S21: 0.9027 S22: -0.2433 S23: 0.5204 REMARK 3 S31: -0.1098 S32: -1.3400 S33: 0.0144 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5573 13.3517 -16.0213 REMARK 3 T TENSOR REMARK 3 T11: 0.4945 T22: 0.6656 REMARK 3 T33: 0.5777 T12: -0.0564 REMARK 3 T13: -0.0442 T23: 0.1513 REMARK 3 L TENSOR REMARK 3 L11: 3.5949 L22: 5.7732 REMARK 3 L33: 0.5614 L12: -1.8918 REMARK 3 L13: 1.1512 L23: -0.9715 REMARK 3 S TENSOR REMARK 3 S11: 0.2486 S12: -0.4298 S13: -0.6278 REMARK 3 S21: 0.2233 S22: 0.2275 S23: 0.4463 REMARK 3 S31: 0.2957 S32: -0.4336 S33: -0.5605 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7258 23.3548 -10.0326 REMARK 3 T TENSOR REMARK 3 T11: 0.3550 T22: 0.5328 REMARK 3 T33: 0.5013 T12: 0.0055 REMARK 3 T13: 0.0602 T23: 0.1056 REMARK 3 L TENSOR REMARK 3 L11: 1.8659 L22: 0.9922 REMARK 3 L33: 3.2461 L12: -0.3796 REMARK 3 L13: 1.3629 L23: 0.2766 REMARK 3 S TENSOR REMARK 3 S11: 0.1089 S12: -0.1724 S13: 0.0450 REMARK 3 S21: 0.3879 S22: 0.0841 S23: 0.3240 REMARK 3 S31: 0.0536 S32: -0.1100 S33: -0.1444 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9017 20.9864 -6.5806 REMARK 3 T TENSOR REMARK 3 T11: 0.3426 T22: 0.5511 REMARK 3 T33: 0.4689 T12: -0.0059 REMARK 3 T13: -0.0017 T23: 0.0963 REMARK 3 L TENSOR REMARK 3 L11: 2.6798 L22: 2.3663 REMARK 3 L33: 3.3694 L12: -0.4113 REMARK 3 L13: 1.6640 L23: -1.0315 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: 0.0246 S13: 0.2864 REMARK 3 S21: 0.1448 S22: 0.0196 S23: 0.1367 REMARK 3 S31: 0.0064 S32: 0.0880 S33: -0.0189 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9916 24.1519 -12.4698 REMARK 3 T TENSOR REMARK 3 T11: 0.2922 T22: 0.5333 REMARK 3 T33: 0.4419 T12: 0.0187 REMARK 3 T13: 0.0055 T23: 0.1106 REMARK 3 L TENSOR REMARK 3 L11: 5.3738 L22: 1.3088 REMARK 3 L33: 2.0297 L12: -0.2363 REMARK 3 L13: 2.1017 L23: -0.1045 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0368 S13: 0.2418 REMARK 3 S21: 0.1426 S22: -0.0449 S23: -0.0350 REMARK 3 S31: -0.2267 S32: 0.0411 S33: 0.0402 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6935 2.2147 -7.8766 REMARK 3 T TENSOR REMARK 3 T11: 0.4572 T22: 0.4423 REMARK 3 T33: 0.6337 T12: -0.0198 REMARK 3 T13: -0.1216 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 2.0206 L22: 3.3401 REMARK 3 L33: 0.1611 L12: -0.6443 REMARK 3 L13: -0.4671 L23: -0.0126 REMARK 3 S TENSOR REMARK 3 S11: 0.3415 S12: 0.0795 S13: -0.6195 REMARK 3 S21: -0.2038 S22: -0.0234 S23: 0.5653 REMARK 3 S31: 0.3454 S32: -0.1520 S33: -0.2252 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1195 5.4156 5.7425 REMARK 3 T TENSOR REMARK 3 T11: 0.5443 T22: 0.4400 REMARK 3 T33: 0.3326 T12: -0.0241 REMARK 3 T13: -0.0793 T23: 0.0682 REMARK 3 L TENSOR REMARK 3 L11: 9.0165 L22: 3.1259 REMARK 3 L33: 3.3571 L12: -0.6311 REMARK 3 L13: -2.6434 L23: 0.5996 REMARK 3 S TENSOR REMARK 3 S11: 0.0313 S12: -0.1722 S13: -0.1133 REMARK 3 S21: 0.2229 S22: -0.0342 S23: -0.2256 REMARK 3 S31: -0.0525 S32: -0.2843 S33: -0.2340 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 1.22900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: TETRAGONAL BIPYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.5, 1.4M AMMONIUM REMARK 280 SULFATE, 4.5% PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.10000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.09000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.05000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.09000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.15000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.09000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.09000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.05000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.09000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.09000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.15000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 19 CD OE1 OE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLU A 79 CD OE1 OE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 ASN A 87 CG OD1 ND2 REMARK 470 ASP A 89 CG OD1 OD2 REMARK 470 LEU A 101 CG CD1 CD2 REMARK 470 TYR A 102 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 106 CE NZ REMARK 470 MET A 108 CE REMARK 470 GLN A 112 CG CD OE1 NE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 124 CD CE NZ REMARK 470 LYS A 131 CD CE NZ REMARK 470 LEU A 132 CD1 CD2 REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 THR A 153 OG1 CG2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 306 CD1 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CE NZ REMARK 470 LYS A 345 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN A 401 H101 A1H A 402 1.34 REMARK 500 HH21 ARG A 138 O1 SO4 A 404 1.51 REMARK 500 OD2 ASP A 28 HG SER A 30 1.56 REMARK 500 O TYR A 102 HE22 GLN A 239 1.57 REMARK 500 O HOH A 557 O HOH A 562 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 323 HH22 ARG A 347 7555 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 41.00 -142.77 REMARK 500 ILE A 210 -56.07 -123.29 REMARK 500 ARG A 238 -6.99 80.37 REMARK 500 ASN A 246 75.82 -152.00 REMARK 500 MET A 275 125.68 -32.02 REMARK 500 TYR A 276 -0.87 76.48 REMARK 500 ASN A 332 112.09 -167.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 133.6 REMARK 620 3 HIS A 279 NE2 91.5 91.5 REMARK 620 4 A1H A 402 N10 111.3 113.6 100.5 REMARK 620 5 A1H A 402 N13 89.4 89.8 177.2 76.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A1H A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 DBREF 5OP8 A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQADV 5OP8 SER A 0 UNP Q9NWT6 EXPRESSION TAG SEQRES 1 A 350 SER MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SEQRES 2 A 350 SER GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO SEQRES 3 A 350 ALA TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO SEQRES 4 A 350 THR ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG SEQRES 5 A 350 ALA GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU SEQRES 6 A 350 THR ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP SEQRES 7 A 350 LEU GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SEQRES 8 A 350 SER VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR SEQRES 9 A 350 ASP GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO SEQRES 10 A 350 ARG SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL SEQRES 11 A 350 GLU LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU SEQRES 12 A 350 ARG LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY SEQRES 13 A 350 ARG LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN SEQRES 14 A 350 TRP ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN SEQRES 15 A 350 LEU THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN SEQRES 16 A 350 VAL THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE SEQRES 17 A 350 ALA GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO SEQRES 18 A 350 PRO ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS SEQRES 19 A 350 HIS PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN SEQRES 20 A 350 PRO ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL SEQRES 21 A 350 GLY TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR SEQRES 22 A 350 ILE PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU SEQRES 23 A 350 ASN GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS SEQRES 24 A 350 GLY ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS SEQRES 25 A 350 ALA HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS SEQRES 26 A 350 MET LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY SEQRES 27 A 350 PRO LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET ZN A 401 1 HET A1H A 402 37 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET GOL A 406 14 HET GOL A 407 14 HETNAM ZN ZINC ION HETNAM A1H 2-(6-MORPHOLIN-4-YLPYRIMIDIN-4-YL)-4-(1,2,3-TRIAZOL-1- HETNAM 2 A1H YL)-1~{H}-PYRAZOL-3-ONE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 A1H C13 H14 N8 O2 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *62(H2 O) HELIX 1 AA1 ASP A 28 LEU A 32 5 5 HELIX 2 AA2 ASP A 49 ASN A 58 1 10 HELIX 3 AA3 VAL A 70 TRP A 76 5 7 HELIX 4 AA4 ASP A 77 ILE A 85 1 9 HELIX 5 AA5 ASP A 104 MET A 108 5 5 HELIX 6 AA6 PHE A 125 ARG A 138 1 14 HELIX 7 AA7 GLY A 155 GLY A 164 1 10 HELIX 8 AA8 ASN A 166 ARG A 177 1 12 HELIX 9 AA9 PRO A 220 ASP A 222 5 3 HELIX 10 AB1 GLN A 223 TYR A 228 1 6 HELIX 11 AB2 PHE A 252 VAL A 258 5 7 HELIX 12 AB3 LYS A 311 GLY A 331 1 21 HELIX 13 AB4 ASN A 332 GLN A 334 5 3 HELIX 14 AB5 GLU A 335 LYS A 345 1 11 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O VAL A 293 N ALA A 208 SHEET 6 AA2 9 LEU A 182 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189 SHEET 8 AA2 9 ASP A 89 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 AA2 9 ARG A 120 LYS A 124 -1 O MET A 123 N PHE A 90 LINK NE2 HIS A 199 ZN ZN A 401 1555 1555 2.06 LINK OD2 ASP A 201 ZN ZN A 401 1555 1555 1.99 LINK NE2 HIS A 279 ZN ZN A 401 1555 1555 2.10 LINK ZN ZN A 401 N10 A1H A 402 1555 1555 2.03 LINK ZN ZN A 401 N13 A1H A 402 1555 1555 2.64 CISPEP 1 TYR A 308 PRO A 309 0 5.15 SITE 1 AC1 4 HIS A 199 ASP A 201 HIS A 279 A1H A 402 SITE 1 AC2 14 TYR A 93 TYR A 145 GLN A 147 LEU A 188 SITE 2 AC2 14 HIS A 199 ASP A 201 PHE A 207 LYS A 214 SITE 3 AC2 14 HIS A 279 ILE A 281 ASN A 294 TRP A 296 SITE 4 AC2 14 ZN A 401 GOL A 406 SITE 1 AC3 3 LYS A 311 ALA A 312 HOH A 503 SITE 1 AC4 4 ARG A 138 GLY A 139 GLU A 141 GLU A 142 SITE 1 AC5 2 ARG A 17 ARG A 44 SITE 1 AC6 3 GLN A 203 A1H A 402 HOH A 507 SITE 1 AC7 7 LYS A 99 TYR A 230 SER A 240 GLN A 241 SITE 2 AC7 7 VAL A 242 ASP A 243 HOH A 505 CRYST1 86.180 86.180 148.200 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011604 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006748 0.00000