HEADER OXIDOREDUCTASE 09-AUG-17 5OPC TITLE FACTOR INHIBITING HIF (FIH) IN COMPLEX WITH ZINC AND VADADUSTAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ON-HEME, DIOXYGENASE, OXYGENASE, DNA-BINDING, METAL-BINDING, KEYWDS 2 TRANSCRIPTION, HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, KEYWDS 3 ASPARAGINYL/ASPARTYL HYDROXYLASE, EPIGENETIC REGULATION, SIGNALING, KEYWDS 4 ARD, BETA-HYDROXYLATION, ACTIVATOR-INHIBITOR, OXIDOREDUCTASE-PEPTIDE KEYWDS 5 COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.M.LEISSING,C.J.SCHOFIELD,I.J.CLIFTON,X.LU,D.ZHANG REVDAT 3 17-JAN-24 5OPC 1 REMARK REVDAT 2 21-FEB-18 5OPC 1 JRNL REVDAT 1 18-OCT-17 5OPC 0 JRNL AUTH T.L.YEH,T.M.LEISSING,M.I.ABBOUD,C.C.THINNES,O.ATASOYLU, JRNL AUTH 2 J.P.HOLT-MARTYN,D.ZHANG,A.TUMBER,K.LIPPL,C.T.LOHANS, JRNL AUTH 3 I.K.H.LEUNG,H.MORCRETTE,I.J.CLIFTON,T.D.W.CLARIDGE, JRNL AUTH 4 A.KAWAMURA,E.FLASHMAN,X.LU,P.J.RATCLIFFE,R.CHOWDHURY, JRNL AUTH 5 C.W.PUGH,C.J.SCHOFIELD JRNL TITL MOLECULAR AND CELLULAR MECHANISMS OF HIF PROLYL HYDROXYLASE JRNL TITL 2 INHIBITORS IN CLINICAL TRIALS. JRNL REF CHEM SCI V. 8 7651 2017 JRNL REFN ISSN 2041-6520 JRNL PMID 29435217 JRNL DOI 10.1039/C7SC02103H REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 75.1070 - 4.7838 1.00 2965 157 0.2152 0.2406 REMARK 3 2 4.7838 - 3.7971 1.00 2798 154 0.1561 0.1572 REMARK 3 3 3.7971 - 3.3171 1.00 2773 130 0.1702 0.1915 REMARK 3 4 3.3171 - 3.0138 1.00 2738 160 0.1873 0.2066 REMARK 3 5 3.0138 - 2.7978 1.00 2708 136 0.2019 0.2651 REMARK 3 6 2.7978 - 2.6328 1.00 2733 138 0.2070 0.2389 REMARK 3 7 2.6328 - 2.5010 1.00 2721 130 0.2211 0.2509 REMARK 3 8 2.5010 - 2.3921 1.00 2695 150 0.2400 0.2842 REMARK 3 9 2.3921 - 2.3000 1.00 2703 139 0.2837 0.3498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2827 REMARK 3 ANGLE : 0.522 3849 REMARK 3 CHIRALITY : 0.044 387 REMARK 3 PLANARITY : 0.004 504 REMARK 3 DIHEDRAL : 9.972 1636 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1429 10.9083 -23.1524 REMARK 3 T TENSOR REMARK 3 T11: 0.6507 T22: 0.9675 REMARK 3 T33: 0.8163 T12: 0.0287 REMARK 3 T13: 0.0693 T23: -0.3228 REMARK 3 L TENSOR REMARK 3 L11: 0.4083 L22: 0.8289 REMARK 3 L33: 0.4169 L12: -0.6003 REMARK 3 L13: -0.3568 L23: 0.5113 REMARK 3 S TENSOR REMARK 3 S11: -0.2378 S12: 0.7149 S13: -0.9245 REMARK 3 S21: -0.3577 S22: -0.3498 S23: 0.0096 REMARK 3 S31: 0.5241 S32: -0.3115 S33: 0.5696 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4375 18.6425 -12.0238 REMARK 3 T TENSOR REMARK 3 T11: 0.3363 T22: 0.8146 REMARK 3 T33: 0.5421 T12: 0.0299 REMARK 3 T13: -0.0760 T23: -0.1515 REMARK 3 L TENSOR REMARK 3 L11: 3.1108 L22: 2.4961 REMARK 3 L33: 2.7090 L12: -0.6470 REMARK 3 L13: -1.8676 L23: 0.2185 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: -0.2631 S13: -0.2962 REMARK 3 S21: 0.0524 S22: -0.1625 S23: -0.1064 REMARK 3 S31: 0.0389 S32: 0.3781 S33: 0.1157 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6476 13.4825 4.5359 REMARK 3 T TENSOR REMARK 3 T11: 0.8978 T22: 1.1175 REMARK 3 T33: 0.6388 T12: 0.2348 REMARK 3 T13: -0.0893 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 2.2208 L22: 2.8831 REMARK 3 L33: 0.3878 L12: -1.9452 REMARK 3 L13: -0.8003 L23: 0.3569 REMARK 3 S TENSOR REMARK 3 S11: -0.4586 S12: -1.0445 S13: -0.2753 REMARK 3 S21: 0.7536 S22: 0.1956 S23: 0.4311 REMARK 3 S31: 0.4888 S32: 0.6547 S33: 0.2016 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6689 26.9516 -14.1978 REMARK 3 T TENSOR REMARK 3 T11: 0.4503 T22: 0.9186 REMARK 3 T33: 0.6152 T12: -0.0546 REMARK 3 T13: -0.0252 T23: -0.1897 REMARK 3 L TENSOR REMARK 3 L11: 2.4408 L22: 1.7505 REMARK 3 L33: 0.9179 L12: -1.1561 REMARK 3 L13: -1.5154 L23: 0.6399 REMARK 3 S TENSOR REMARK 3 S11: 0.2097 S12: -0.5819 S13: 0.6418 REMARK 3 S21: 0.1629 S22: 0.0676 S23: -0.7105 REMARK 3 S31: -0.3893 S32: 0.9671 S33: -0.1289 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6784 21.4573 -8.2104 REMARK 3 T TENSOR REMARK 3 T11: 0.3333 T22: 0.6024 REMARK 3 T33: 0.5215 T12: 0.0076 REMARK 3 T13: -0.0068 T23: -0.1300 REMARK 3 L TENSOR REMARK 3 L11: 2.2854 L22: 0.3881 REMARK 3 L33: 3.7095 L12: -0.8325 REMARK 3 L13: -2.1435 L23: 1.1996 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: -0.0423 S13: -0.2673 REMARK 3 S21: 0.1250 S22: 0.0393 S23: -0.1287 REMARK 3 S31: -0.0159 S32: 0.1191 S33: -0.0756 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5572 19.3990 -12.8471 REMARK 3 T TENSOR REMARK 3 T11: 0.2837 T22: 0.6566 REMARK 3 T33: 0.4417 T12: 0.0026 REMARK 3 T13: -0.0184 T23: -0.1502 REMARK 3 L TENSOR REMARK 3 L11: 1.7184 L22: 2.5421 REMARK 3 L33: 2.4674 L12: -1.5158 REMARK 3 L13: -1.1023 L23: 0.2388 REMARK 3 S TENSOR REMARK 3 S11: 0.1028 S12: 0.3850 S13: -0.1954 REMARK 3 S21: 0.0324 S22: -0.1473 S23: -0.0978 REMARK 3 S31: 0.1204 S32: -0.1223 S33: 0.0335 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.1753 40.6013 -7.0205 REMARK 3 T TENSOR REMARK 3 T11: 0.5919 T22: 0.5777 REMARK 3 T33: 0.6746 T12: -0.0090 REMARK 3 T13: 0.1479 T23: -0.0762 REMARK 3 L TENSOR REMARK 3 L11: 2.6464 L22: 2.0412 REMARK 3 L33: 0.5971 L12: -0.6530 REMARK 3 L13: 0.4392 L23: 0.4987 REMARK 3 S TENSOR REMARK 3 S11: 0.2866 S12: 0.0329 S13: 0.4829 REMARK 3 S21: -0.2381 S22: 0.0866 S23: -0.5655 REMARK 3 S31: -0.5334 S32: 0.1970 S33: -0.3152 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.1472 38.1294 5.2855 REMARK 3 T TENSOR REMARK 3 T11: 0.6535 T22: 0.5114 REMARK 3 T33: 0.4622 T12: 0.0928 REMARK 3 T13: 0.0808 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 4.2743 L22: 4.4979 REMARK 3 L33: 2.8602 L12: -0.4682 REMARK 3 L13: 0.0545 L23: -0.7696 REMARK 3 S TENSOR REMARK 3 S11: 0.2541 S12: -0.2315 S13: -0.1420 REMARK 3 S21: 0.4075 S22: -0.0844 S23: 0.2877 REMARK 3 S31: 0.4796 S32: 0.5678 S33: -0.0694 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26216 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 86.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.50 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.50 REMARK 200 R MERGE FOR SHELL (I) : 1.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.5, 1.7M AMMONIUM REMARK 280 SULFATE, 5.5% PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.76000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.39950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.39950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.38000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.39950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.39950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.14000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.39950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.39950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.38000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.39950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.39950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 112.14000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.76000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -86.79900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 86.79900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 13 OG REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 19 CD OE1 OE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 54 CD OE1 OE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 SER A 96 OG REMARK 470 LYS A 106 CE NZ REMARK 470 MET A 108 SD CE REMARK 470 GLN A 112 CD OE1 NE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 LYS A 131 CE NZ REMARK 470 LEU A 132 CD1 CD2 REMARK 470 GLN A 133 CD OE1 NE2 REMARK 470 ASP A 134 CG OD1 OD2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 GLU A 141 CD OE1 OE2 REMARK 470 LEU A 150 CD1 CD2 REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CE NZ REMARK 470 ASN A 185 OD1 ND2 REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 LYS A 298 CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 306 CD1 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 GLU A 328 CD OE1 OE2 REMARK 470 ILE A 344 CD1 REMARK 470 LYS A 345 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 39 OE2 GLU A 262 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 309 C - N - CD ANGL. DEV. = -23.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 43.99 -141.81 REMARK 500 ASN A 151 -166.48 -122.01 REMARK 500 ASP A 237 134.05 -38.56 REMARK 500 ARG A 238 -4.59 86.23 REMARK 500 ASN A 246 71.77 -151.31 REMARK 500 TYR A 308 -170.70 82.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 108.5 REMARK 620 3 HIS A 279 NE2 90.6 76.5 REMARK 620 4 A1Z A 412 O10 90.1 160.8 108.5 REMARK 620 5 A1Z A 412 N11 101.7 97.7 167.6 73.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A1Z A 412 DBREF 5OPC A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQADV 5OPC SER A 0 UNP Q9NWT6 EXPRESSION TAG SEQRES 1 A 350 SER MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SEQRES 2 A 350 SER GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO SEQRES 3 A 350 ALA TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO SEQRES 4 A 350 THR ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG SEQRES 5 A 350 ALA GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU SEQRES 6 A 350 THR ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP SEQRES 7 A 350 LEU GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SEQRES 8 A 350 SER VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR SEQRES 9 A 350 ASP GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO SEQRES 10 A 350 ARG SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL SEQRES 11 A 350 GLU LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU SEQRES 12 A 350 ARG LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY SEQRES 13 A 350 ARG LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN SEQRES 14 A 350 TRP ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN SEQRES 15 A 350 LEU THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN SEQRES 16 A 350 VAL THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE SEQRES 17 A 350 ALA GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO SEQRES 18 A 350 PRO ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS SEQRES 19 A 350 HIS PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN SEQRES 20 A 350 PRO ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL SEQRES 21 A 350 GLY TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR SEQRES 22 A 350 ILE PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU SEQRES 23 A 350 ASN GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS SEQRES 24 A 350 GLY ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS SEQRES 25 A 350 ALA HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS SEQRES 26 A 350 MET LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY SEQRES 27 A 350 PRO LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET ZN A 406 1 HET GOL A 407 14 HET GOL A 408 14 HET GOL A 409 14 HET GOL A 410 14 HET GOL A 411 14 HET A1Z A 412 42 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM A1Z VADADUSTAT HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN A1Z GSK128863 FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 ZN ZN 2+ FORMUL 8 GOL 5(C3 H8 O3) FORMUL 13 A1Z C14 H11 CL N2 O4 FORMUL 14 HOH *72(H2 O) HELIX 1 AA1 GLU A 19 LEU A 23 5 5 HELIX 2 AA2 ASP A 28 LEU A 32 5 5 HELIX 3 AA3 ASP A 49 ASN A 58 1 10 HELIX 4 AA4 VAL A 70 TRP A 76 5 7 HELIX 5 AA5 ASP A 77 ILE A 85 1 9 HELIX 6 AA6 ASP A 104 MET A 108 5 5 HELIX 7 AA7 LYS A 124 GLY A 139 1 16 HELIX 8 AA8 GLY A 155 GLY A 164 1 10 HELIX 9 AA9 ASN A 166 ARG A 177 1 12 HELIX 10 AB1 PRO A 220 ASP A 222 5 3 HELIX 11 AB2 GLN A 223 TYR A 228 1 6 HELIX 12 AB3 PHE A 252 VAL A 258 5 7 HELIX 13 AB4 LYS A 311 LEU A 330 1 20 HELIX 14 AB5 ASN A 332 GLN A 334 5 3 HELIX 15 AB6 GLU A 335 LYS A 345 1 11 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O VAL A 293 N ALA A 208 SHEET 6 AA2 9 LEU A 182 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189 SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 AA2 9 SER A 118 MET A 123 -1 O GLU A 121 N VAL A 92 LINK NE2 HIS A 199 ZN ZN A 406 1555 1555 2.18 LINK OD2 ASP A 201 ZN ZN A 406 1555 1555 2.34 LINK NE2 HIS A 279 ZN ZN A 406 1555 1555 2.26 LINK ZN ZN A 406 O10 A1Z A 412 1555 1555 2.39 LINK ZN ZN A 406 N11 A1Z A 412 1555 1555 2.22 SITE 1 AC1 3 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC2 3 LYS A 311 ALA A 312 HOH A 505 SITE 1 AC3 4 LYS A 107 ASP A 237 ARG A 320 LYS A 324 SITE 1 AC4 4 ARG A 143 GLU A 192 LEU A 285 ASN A 286 SITE 1 AC5 2 ARG A 17 ARG A 44 SITE 1 AC6 4 HIS A 199 ASP A 201 HIS A 279 A1Z A 412 SITE 1 AC7 8 LEU A 101 TYR A 230 SER A 240 GLN A 241 SITE 2 AC7 8 VAL A 242 ASP A 243 HOH A 509 HOH A 517 SITE 1 AC8 6 TYR A 102 HIS A 199 ASP A 237 ARG A 238 SITE 2 AC8 6 GLN A 239 A1Z A 412 SITE 1 AC9 4 GLU A 60 PRO A 220 ASP A 222 TYR A 261 SITE 1 AD1 3 ARG A 33 HIS A 98 ARG A 143 SITE 1 AD2 3 SER A 36 ASN A 168 ASN A 171 SITE 1 AD3 17 TYR A 145 LEU A 186 LEU A 188 THR A 196 SITE 2 AD3 17 HIS A 199 ASP A 201 PHE A 207 LYS A 214 SITE 3 AD3 17 ARG A 238 HIS A 279 ILE A 281 ASN A 294 SITE 4 AD3 17 TRP A 296 ZN A 406 GOL A 408 HOH A 511 SITE 5 AD3 17 HOH A 572 CRYST1 86.799 86.799 149.520 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011521 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006688 0.00000