HEADER IMMUNE SYSTEM 09-AUG-17 5OPI TITLE CRYSTAL STRUCTURE OF THE TAPBPR-MHC I PEPTIDE EDITING COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-2D(B); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: TAP BINDING PROTEIN-LIKE VARIANT; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 20 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ADAPTIVE IMMUNITY, ANTIGEN PROCESSING, ANTIGEN PRESENTATION, PEPTIDE KEYWDS 2 PROOFREADING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.THOMAS,R.TAMPE REVDAT 5 06-NOV-24 5OPI 1 REMARK REVDAT 4 17-JAN-24 5OPI 1 REMARK REVDAT 3 06-DEC-17 5OPI 1 JRNL REVDAT 2 25-OCT-17 5OPI 1 JRNL REVDAT 1 18-OCT-17 5OPI 0 JRNL AUTH C.THOMAS,R.TAMPE JRNL TITL STRUCTURE OF THE TAPBPR-MHC I COMPLEX DEFINES THE MECHANISM JRNL TITL 2 OF PEPTIDE LOADING AND EDITING. JRNL REF SCIENCE V. 358 1060 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 29025996 JRNL DOI 10.1126/SCIENCE.AAO6001 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2747: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2545 - 6.5956 1.00 2923 155 0.2178 0.2900 REMARK 3 2 6.5956 - 5.2370 1.00 2794 146 0.2627 0.2888 REMARK 3 3 5.2370 - 4.5756 1.00 2713 145 0.1971 0.2705 REMARK 3 4 4.5756 - 4.1574 1.00 2730 141 0.2085 0.2789 REMARK 3 5 4.1574 - 3.8596 0.99 2679 143 0.2632 0.3384 REMARK 3 6 3.8596 - 3.6321 1.00 2690 140 0.2979 0.3205 REMARK 3 7 3.6321 - 3.4503 1.00 2673 142 0.3230 0.3919 REMARK 3 8 3.4503 - 3.3001 1.00 2681 140 0.4058 0.4414 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.580 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5587 REMARK 3 ANGLE : 1.547 7605 REMARK 3 CHIRALITY : 0.075 837 REMARK 3 PLANARITY : 0.010 985 REMARK 3 DIHEDRAL : 15.532 3292 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 92.2732 24.3015 5.5939 REMARK 3 T TENSOR REMARK 3 T11: 1.0046 T22: 0.6462 REMARK 3 T33: 0.9029 T12: -0.0841 REMARK 3 T13: -0.1287 T23: -0.1075 REMARK 3 L TENSOR REMARK 3 L11: 1.2660 L22: 1.5656 REMARK 3 L33: 2.5335 L12: 0.9200 REMARK 3 L13: 0.2297 L23: -0.6362 REMARK 3 S TENSOR REMARK 3 S11: 0.0409 S12: -0.1373 S13: 0.0297 REMARK 3 S21: -0.3429 S22: 0.0980 S23: 0.1662 REMARK 3 S31: 1.0146 S32: -0.4621 S33: -0.1500 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999815963 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23094 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 26.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 27.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WS6, 2YXF, 3F8U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG400, 5% POLY-GAMMA-GLUTAMIC REMARK 280 ACID, AND 450 MM SODIUM CACODYLATE PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.86667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.43333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.65000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.21667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 101.08333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.86667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 40.43333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 20.21667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.65000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 101.08333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 279 REMARK 465 ALA C 11 REMARK 465 ASP C 12 REMARK 465 LEU C 52 REMARK 465 ASP C 53 REMARK 465 ASP C 54 REMARK 465 GLY C 55 REMARK 465 SER C 56 REMARK 465 LEU C 57 REMARK 465 GLU C 58 REMARK 465 ASP C 59 REMARK 465 PHE C 60 REMARK 465 THR C 61 REMARK 465 ASP C 62 REMARK 465 PHE C 63 REMARK 465 GLN C 64 REMARK 465 GLY C 65 REMARK 465 GLY C 66 REMARK 465 THR C 67 REMARK 465 LEU C 68 REMARK 465 ALA C 69 REMARK 465 GLN C 70 REMARK 465 GLN C 112 REMARK 465 MET C 113 REMARK 465 THR C 114 REMARK 465 GLU C 115 REMARK 465 THR C 116 REMARK 465 THR C 117 REMARK 465 VAL C 118 REMARK 465 LYS C 119 REMARK 465 ALA C 147 REMARK 465 LYS C 148 REMARK 465 ASN C 149 REMARK 465 GLU C 150 REMARK 465 VAL C 151 REMARK 465 GLU C 238 REMARK 465 PRO C 239 REMARK 465 ALA C 240 REMARK 465 GLN C 241 REMARK 465 LEU C 322 REMARK 465 GLY C 323 REMARK 465 GLY C 324 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 SER A 278 OG REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LEU B 64 CG CD1 CD2 REMARK 470 LYS C 25 CG CD CE NZ REMARK 470 ARG C 41 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 51 CG1 CG2 REMARK 470 ASP C 71 CG OD1 OD2 REMARK 470 ASP C 72 CG OD1 OD2 REMARK 470 GLN C 85 CG CD OE1 NE2 REMARK 470 ILE C 86 CG1 CG2 CD1 REMARK 470 PRO C 87 CG CD REMARK 470 GLN C 88 CG CD OE1 NE2 REMARK 470 GLU C 90 CG CD OE1 OE2 REMARK 470 LEU C 93 CG CD1 CD2 REMARK 470 LYS C 100 CG CD CE NZ REMARK 470 PHE C 110 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 111 CG CD1 CD2 REMARK 470 THR C 120 OG1 CG2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 146 CG1 CG2 REMARK 470 LEU C 152 CG CD1 CD2 REMARK 470 TRP C 153 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 153 CZ3 CH2 REMARK 470 HIS C 154 CG ND1 CD2 CE1 NE2 REMARK 470 PRO C 155 CG CD REMARK 470 THR C 156 OG1 CG2 REMARK 470 LEU C 157 CG CD1 CD2 REMARK 470 ASN C 158 CG OD1 ND2 REMARK 470 LEU C 159 CG CD1 CD2 REMARK 470 PRO C 160 CG CD REMARK 470 LEU C 161 CG CD1 CD2 REMARK 470 SER C 162 OG REMARK 470 PRO C 163 CG CD REMARK 470 GLN C 164 CG CD OE1 NE2 REMARK 470 LEU C 242 CG CD1 CD2 REMARK 470 GLU C 295 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL C 15 N GLN C 48 2.14 REMARK 500 O PRO C 155 O ASN C 158 2.17 REMARK 500 OD1 ASN A 127 OG1 THR A 134 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO C 74 CD PRO C 74 N -0.137 REMARK 500 PRO C 310 CD PRO C 310 N -0.224 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 78 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 SER C 43 N - CA - C ANGL. DEV. = 20.8 DEGREES REMARK 500 PRO C 74 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO C 74 C - N - CD ANGL. DEV. = -21.1 DEGREES REMARK 500 PRO C 74 CA - N - CD ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO C 155 N - CA - CB ANGL. DEV. = 7.7 DEGREES REMARK 500 PRO C 310 C - N - CD ANGL. DEV. = -13.8 DEGREES REMARK 500 PRO C 383 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 173.35 -59.33 REMARK 500 TYR A 123 -65.69 -107.76 REMARK 500 MET A 138 -48.10 -25.70 REMARK 500 ARG A 194 -64.48 -131.99 REMARK 500 ASN A 220 25.02 46.27 REMARK 500 THR A 225 -49.22 -131.77 REMARK 500 SER A 277 -131.05 53.47 REMARK 500 LYS B 19 -134.21 55.50 REMARK 500 ASN B 21 171.22 169.52 REMARK 500 ASP B 98 70.54 -115.63 REMARK 500 ARG C 41 -132.41 -177.72 REMARK 500 ALA C 42 -179.99 -179.77 REMARK 500 LEU C 46 158.11 179.81 REMARK 500 PRO C 50 -83.16 -56.88 REMARK 500 ILE C 86 -137.49 57.17 REMARK 500 GLU C 105 125.26 -172.39 REMARK 500 TYR C 109 59.64 -66.21 REMARK 500 PHE C 110 -164.47 -174.73 REMARK 500 ALA C 121 -165.44 -74.98 REMARK 500 ALA C 122 146.59 -170.44 REMARK 500 SER C 131 -122.45 56.69 REMARK 500 PRO C 163 105.18 -171.62 REMARK 500 PHE C 173 136.43 -171.66 REMARK 500 CYS C 194 116.39 -163.41 REMARK 500 PHE C 196 142.08 -175.29 REMARK 500 ILE C 205 -60.04 -127.91 REMARK 500 LYS C 214 -130.58 52.95 REMARK 500 VAL C 220 -74.44 -108.32 REMARK 500 GLN C 229 63.77 -152.21 REMARK 500 ARG C 232 35.81 -152.29 REMARK 500 GLN C 258 -16.95 -45.10 REMARK 500 CYS C 265 108.60 -53.29 REMARK 500 ASN C 294 45.12 75.98 REMARK 500 ALA C 296 -5.33 68.47 REMARK 500 LEU C 298 71.60 44.60 REMARK 500 PRO C 299 85.68 -68.64 REMARK 500 ALA C 327 -159.70 -125.54 REMARK 500 GLN C 328 149.40 -36.12 REMARK 500 SER C 340 173.43 -47.25 REMARK 500 SER C 350 54.82 -107.89 REMARK 500 GLU C 372 21.13 -73.25 REMARK 500 GLU C 373 135.86 -172.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 5OPI A 1 276 UNP P01899 HA11_MOUSE 25 300 DBREF 5OPI B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 5OPI C 15 383 UNP Q53GH5 Q53GH5_HUMAN 33 401 SEQADV 5OPI SER A 277 UNP P01899 EXPRESSION TAG SEQADV 5OPI SER A 278 UNP P01899 EXPRESSION TAG SEQADV 5OPI ALA A 279 UNP P01899 EXPRESSION TAG SEQADV 5OPI ALA C 11 UNP Q53GH5 EXPRESSION TAG SEQADV 5OPI ASP C 12 UNP Q53GH5 EXPRESSION TAG SEQADV 5OPI PRO C 13 UNP Q53GH5 EXPRESSION TAG SEQADV 5OPI GLY C 14 UNP Q53GH5 EXPRESSION TAG SEQADV 5OPI ALA C 97 UNP Q53GH5 CYS 115 ENGINEERED MUTATION SEQADV 5OPI TRP C 123 UNP Q53GH5 ARG 141 ENGINEERED MUTATION SEQRES 1 A 279 GLY PRO HIS SER MET ARG TYR PHE GLU THR ALA VAL SER SEQRES 2 A 279 ARG PRO GLY LEU GLU GLU PRO ARG TYR ILE SER VAL GLY SEQRES 3 A 279 TYR VAL ASP ASN LYS GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 279 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA PRO TRP MET SEQRES 5 A 279 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 A 279 LYS ALA LYS GLY GLN GLU GLN TRP PHE ARG VAL SER LEU SEQRES 7 A 279 ARG ASN LEU LEU GLY TYR TYR ASN GLN SER ALA GLY GLY SEQRES 8 A 279 SER HIS THR LEU GLN GLN MET SER GLY CYS ASP LEU GLY SEQRES 9 A 279 SER ASP TRP ARG LEU LEU ARG GLY TYR LEU GLN PHE ALA SEQRES 10 A 279 TYR GLU GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 279 LYS THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 A 279 ARG ARG LYS TRP GLU GLN SER GLY ALA ALA GLU HIS TYR SEQRES 13 A 279 LYS ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU HIS SEQRES 14 A 279 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 A 279 ASP SER PRO LYS ALA HIS VAL THR HIS HIS PRO ARG SER SEQRES 16 A 279 LYS GLY GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 279 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 A 279 GLU GLU LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 279 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 A 279 VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG SEQRES 21 A 279 VAL TYR HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 A 279 TRP GLU PRO SER SER ALA SEQRES 1 B 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 B 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 B 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 B 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 373 ALA ASP PRO GLY VAL ASP VAL VAL LEU ASP CYS PHE LEU SEQRES 2 C 373 VAL LYS ASP GLY ALA HIS ARG GLY ALA LEU ALA SER SER SEQRES 3 C 373 GLU ASP ARG ALA ARG ALA SER LEU VAL LEU LYS GLN VAL SEQRES 4 C 373 PRO VAL LEU ASP ASP GLY SER LEU GLU ASP PHE THR ASP SEQRES 5 C 373 PHE GLN GLY GLY THR LEU ALA GLN ASP ASP PRO PRO ILE SEQRES 6 C 373 ILE PHE GLU ALA SER VAL ASP LEU VAL GLN ILE PRO GLN SEQRES 7 C 373 ALA GLU ALA LEU LEU HIS ALA ASP ALA SER GLY LYS GLU SEQRES 8 C 373 VAL THR CYS GLU ILE SER ARG TYR PHE LEU GLN MET THR SEQRES 9 C 373 GLU THR THR VAL LYS THR ALA ALA TRP PHE MET ALA ASN SEQRES 10 C 373 VAL GLN VAL SER GLY GLY GLY PRO SER ILE SER LEU VAL SEQRES 11 C 373 MET LYS THR PRO ARG VAL ALA LYS ASN GLU VAL LEU TRP SEQRES 12 C 373 HIS PRO THR LEU ASN LEU PRO LEU SER PRO GLN GLY THR SEQRES 13 C 373 VAL ARG THR ALA VAL GLU PHE GLN VAL MET THR GLN THR SEQRES 14 C 373 GLN SER LEU SER PHE LEU LEU GLY SER SER ALA SER LEU SEQRES 15 C 373 ASP CYS GLY PHE SER MET ALA PRO GLY LEU ASP LEU ILE SEQRES 16 C 373 SER VAL GLU TRP ARG LEU GLN HIS LYS GLY ARG GLY GLN SEQRES 17 C 373 LEU VAL TYR SER TRP THR ALA GLY GLN GLY GLN ALA VAL SEQRES 18 C 373 ARG LYS GLY ALA THR LEU GLU PRO ALA GLN LEU GLY MET SEQRES 19 C 373 ALA ARG ASP ALA SER LEU THR LEU PRO GLY LEU THR ILE SEQRES 20 C 373 GLN ASP GLU GLY THR TYR ILE CYS GLN ILE THR THR SER SEQRES 21 C 373 LEU TYR ARG ALA GLN GLN ILE ILE GLN LEU ASN ILE GLN SEQRES 22 C 373 ALA SER PRO LYS VAL ARG LEU SER LEU ALA ASN GLU ALA SEQRES 23 C 373 LEU LEU PRO THR LEU ILE CYS ASP ILE ALA GLY TYR TYR SEQRES 24 C 373 PRO LEU ASP VAL VAL VAL THR TRP THR ARG GLU GLU LEU SEQRES 25 C 373 GLY GLY SER PRO ALA GLN VAL SER GLY ALA SER PHE SER SEQRES 26 C 373 SER LEU ARG GLN SER VAL ALA GLY THR TYR SER ILE SER SEQRES 27 C 373 SER SER LEU THR ALA GLU PRO GLY SER ALA GLY ALA THR SEQRES 28 C 373 TYR THR CYS GLN VAL THR HIS ILE SER LEU GLU GLU PRO SEQRES 29 C 373 LEU GLY ALA SER THR GLN VAL VAL PRO HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 MET A 138 SER A 150 1 13 HELIX 4 AA4 ALA A 152 GLY A 162 1 11 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 ARG A 181 1 7 HELIX 7 AA7 LYS A 253 GLN A 255 5 3 HELIX 8 AA8 GLY C 27 ALA C 34 1 8 HELIX 9 AA9 PRO C 87 HIS C 94 1 8 HELIX 10 AB1 SER C 131 GLY C 134 5 4 HELIX 11 AB2 THR C 256 GLU C 260 5 5 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 LYS A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N SER A 24 O PHE A 36 SHEET 4 AA1 8 HIS A 3 SER A 13 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 HIS A 93 LEU A 103 -1 O LEU A 95 N ALA A 11 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 ARG A 121 LEU A 126 -1 O ILE A 124 N PHE A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 SER A 195 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 MET A 228 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 AA3 4 LYS A 186 SER A 195 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 LEU A 224 0 SHEET 2 AA4 4 THR A 214 LEU A 219 -1 N LEU A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 TYR A 262 -1 O THR A 258 N GLN A 218 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 270 N VAL A 261 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 SER B 61 PHE B 70 -1 O LEU B 64 N VAL B 27 SHEET 4 AA5 4 HIS B 51 SER B 57 -1 N SER B 55 O TYR B 63 SHEET 1 AA6 4 GLU B 44 ARG B 45 0 SHEET 2 AA6 4 ILE B 35 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA6 4 TYR B 78 HIS B 84 -1 O ARG B 81 N ASP B 38 SHEET 4 AA6 4 LEU B 87 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA7 4 VAL C 15 LEU C 19 0 SHEET 2 AA7 4 LEU C 44 GLN C 48 -1 O GLN C 48 N VAL C 15 SHEET 3 AA7 4 PHE C 77 SER C 80 1 O PHE C 77 N VAL C 45 SHEET 4 AA7 4 VAL C 167 ARG C 168 1 O VAL C 167 N GLU C 78 SHEET 1 AA8 6 PHE C 22 LEU C 23 0 SHEET 2 AA8 6 THR C 103 ARG C 108 1 O ILE C 106 N PHE C 22 SHEET 3 AA8 6 PHE C 124 GLN C 129 -1 O MET C 125 N SER C 107 SHEET 4 AA8 6 SER C 136 LYS C 142 -1 O MET C 141 N PHE C 124 SHEET 5 AA8 6 ALA C 170 THR C 177 -1 O ALA C 170 N LYS C 142 SHEET 6 AA8 6 GLY C 195 MET C 198 -1 O GLY C 195 N MET C 176 SHEET 1 AA9 5 SER C 181 LEU C 185 0 SHEET 2 AA9 5 GLN C 275 GLN C 283 1 O ASN C 281 N LEU C 182 SHEET 3 AA9 5 GLY C 261 GLN C 266 -1 N GLY C 261 O LEU C 280 SHEET 4 AA9 5 VAL C 207 HIS C 213 -1 N GLU C 208 O GLN C 266 SHEET 5 AA9 5 ARG C 216 TRP C 223 -1 O ARG C 216 N HIS C 213 SHEET 1 AB1 3 ALA C 190 LEU C 192 0 SHEET 2 AB1 3 LEU C 250 LEU C 252 -1 O LEU C 252 N ALA C 190 SHEET 3 AB1 3 ALA C 235 THR C 236 -1 N ALA C 235 O THR C 251 SHEET 1 AB2 4 LYS C 287 ALA C 293 0 SHEET 2 AB2 4 THR C 300 TYR C 308 -1 O ASP C 304 N ARG C 289 SHEET 3 AB2 4 TYR C 345 SER C 349 -1 O ILE C 347 N ILE C 305 SHEET 4 AB2 4 ARG C 338 GLN C 339 -1 N ARG C 338 O SER C 346 SHEET 1 AB3 3 GLN C 328 VAL C 329 0 SHEET 2 AB3 3 VAL C 314 GLU C 320 -1 N TRP C 317 O VAL C 329 SHEET 3 AB3 3 GLN C 365 THR C 367 -1 O GLN C 365 N THR C 316 SHEET 1 AB4 4 GLN C 328 VAL C 329 0 SHEET 2 AB4 4 VAL C 314 GLU C 320 -1 N TRP C 317 O VAL C 329 SHEET 3 AB4 4 ALA C 360 THR C 363 -1 O THR C 363 N THR C 318 SHEET 4 AB4 4 SER C 378 VAL C 381 -1 O THR C 379 N TYR C 362 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.07 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.04 SSBOND 4 CYS C 21 CYS C 104 1555 1555 2.09 SSBOND 5 CYS C 194 CYS C 265 1555 1555 2.05 SSBOND 6 CYS C 303 CYS C 364 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 3.98 CISPEP 2 HIS B 31 PRO B 32 0 -6.54 CISPEP 3 TYR C 309 PRO C 310 0 7.76 CRYST1 205.040 205.040 121.300 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004877 0.002816 0.000000 0.00000 SCALE2 0.000000 0.005632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008244 0.00000