HEADER CELL CYCLE 14-AUG-17 5OQO TITLE CRYSTAL STRUCTURE OF THE S. CEREVISIAE CONDENSIN YCG1-BRN1 SUBCOMPLEX TITLE 2 BOUND TO DNA (CRYSTAL FORM II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONDENSIN COMPLEX SUBUNIT 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAPG HOMOLOG; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: LOOP DELETION: 499-555; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CONDENSIN COMPLEX SUBUNIT 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: BARREN HOMOLOG,CAPH HOMOLOG; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: 384-529; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*GP*AP*TP*GP*TP*GP*TP*AP*GP*CP*TP*AP*CP*AP*CP*AP*TP*C)-3'); COMPND 16 CHAIN: C, D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 GENE: YCG1, YCS5, YDR325W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: ROSETTA (DE3) PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PETMCN; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 15 S288C); SOURCE 16 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 17 ORGANISM_TAXID: 559292; SOURCE 18 GENE: BRN1, YBL097W, YBL0830; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 22 EXPRESSION_SYSTEM_VARIANT: ROSETTA (DE3) PLYSS; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PETMCN; SOURCE 25 MOL_ID: 3; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 28 ORGANISM_TAXID: 32630 KEYWDS KLEISIN, HEAT REPEAT, DNA-BINDING, SMC COMPLEX, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR M.KSCHONSAK,M.HASSLER,C.H.HAERING REVDAT 3 17-JAN-24 5OQO 1 REMARK REVDAT 2 01-NOV-17 5OQO 1 JRNL REVDAT 1 18-OCT-17 5OQO 0 JRNL AUTH M.KSCHONSAK,F.MERKEL,S.BISHT,J.METZ,V.RYBIN,M.HASSLER, JRNL AUTH 2 C.H.HAERING JRNL TITL STRUCTURAL BASIS FOR A SAFETY-BELT MECHANISM THAT ANCHORS JRNL TITL 2 CONDENSIN TO CHROMOSOMES. JRNL REF CELL V. 171 588 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28988770 JRNL DOI 10.1016/J.CELL.2017.09.008 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3216 - 7.8220 1.00 1866 154 0.1753 0.1895 REMARK 3 2 7.8220 - 6.2130 1.00 1782 147 0.2242 0.2464 REMARK 3 3 6.2130 - 5.4289 1.00 1763 144 0.2478 0.2670 REMARK 3 4 5.4289 - 4.9331 1.00 1722 143 0.2079 0.2318 REMARK 3 5 4.9331 - 4.5799 1.00 1750 143 0.1996 0.2921 REMARK 3 6 4.5799 - 4.3100 1.00 1722 143 0.2180 0.2740 REMARK 3 7 4.3100 - 4.0943 1.00 1720 141 0.2230 0.2627 REMARK 3 8 4.0943 - 3.9162 1.00 1717 141 0.2388 0.2912 REMARK 3 9 3.9162 - 3.7655 1.00 1710 141 0.2676 0.3329 REMARK 3 10 3.7655 - 3.6356 1.00 1723 142 0.3015 0.3168 REMARK 3 11 3.6356 - 3.5219 1.00 1695 140 0.3119 0.3447 REMARK 3 12 3.5219 - 3.4213 1.00 1700 140 0.3305 0.3723 REMARK 3 13 3.4213 - 3.3313 1.00 1722 141 0.3420 0.4159 REMARK 3 14 3.3313 - 3.2500 1.00 1696 138 0.3766 0.4513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 8393 REMARK 3 ANGLE : 0.513 11477 REMARK 3 CHIRALITY : 0.037 1321 REMARK 3 PLANARITY : 0.002 1336 REMARK 3 DIHEDRAL : 18.383 5000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200005731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26286 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 49.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.27100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.85400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5OQP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% (W/V) PEG 4000 0.05 M NA CACODYLATE REMARK 280 PH 6.8 10 MM BACL2, VAPOR DIFFUSION, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.40150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.48400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.48400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.40150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 189 REMARK 465 GLN A 190 REMARK 465 THR A 191 REMARK 465 GLU A 192 REMARK 465 HIS A 193 REMARK 465 LEU A 194 REMARK 465 THR A 195 REMARK 465 GLU A 196 REMARK 465 LEU A 197 REMARK 465 SER A 198 REMARK 465 ASP A 199 REMARK 465 ASN A 200 REMARK 465 GLU A 201 REMARK 465 GLU A 202 REMARK 465 ASN A 203 REMARK 465 PHE A 204 REMARK 465 ASP A 404 REMARK 465 ILE A 405 REMARK 465 SER A 406 REMARK 465 ASN A 407 REMARK 465 ASP A 408 REMARK 465 SER A 409 REMARK 465 SER A 558 REMARK 465 ASP A 559 REMARK 465 ILE A 560 REMARK 465 ILE A 561 REMARK 465 ASN A 562 REMARK 465 ASN A 563 REMARK 465 LEU A 564 REMARK 465 PRO A 565 REMARK 465 PRO A 566 REMARK 465 GLU A 912 REMARK 465 THR A 913 REMARK 465 GLN A 914 REMARK 465 THR A 915 REMARK 465 LYS A 916 REMARK 465 ASP A 917 REMARK 465 GLU A 918 REMARK 465 ASN A 919 REMARK 465 ASN A 920 REMARK 465 THR A 921 REMARK 465 ALA A 922 REMARK 465 ASN A 923 REMARK 465 ASP A 924 REMARK 465 GLN A 925 REMARK 465 TYR A 926 REMARK 465 SER A 927 REMARK 465 SER A 928 REMARK 465 ILE A 929 REMARK 465 LEU A 930 REMARK 465 GLY A 931 REMARK 465 ASN A 932 REMARK 465 GLY B 378 REMARK 465 PRO B 379 REMARK 465 LEU B 380 REMARK 465 GLY B 381 REMARK 465 HIS B 382 REMARK 465 PHE B 413 REMARK 465 LYS B 414 REMARK 465 LYS B 415 REMARK 465 ALA B 416 REMARK 465 ASN B 417 REMARK 465 LEU B 418 REMARK 465 VAL B 419 REMARK 465 ASN B 420 REMARK 465 LYS B 421 REMARK 465 GLU B 422 REMARK 465 SER B 423 REMARK 465 ASP B 424 REMARK 465 LEU B 425 REMARK 465 LEU B 426 REMARK 465 GLU B 427 REMARK 465 GLU B 428 REMARK 465 THR B 429 REMARK 465 ARG B 430 REMARK 465 THR B 431 REMARK 465 THR B 432 REMARK 465 ILE B 433 REMARK 465 GLY B 434 REMARK 465 ASP B 435 REMARK 465 THR B 436 REMARK 465 THR B 437 REMARK 465 ASP B 438 REMARK 465 LYS B 439 REMARK 465 ASN B 440 REMARK 465 THR B 441 REMARK 465 THR B 442 REMARK 465 ASP B 443 REMARK 465 ASP B 444 REMARK 465 LYS B 445 REMARK 465 SER B 446 REMARK 465 MET B 447 REMARK 465 ASP B 448 REMARK 465 THR B 449 REMARK 465 LYS B 450 REMARK 465 LYS B 451 REMARK 465 LYS B 452 REMARK 465 HIS B 453 REMARK 465 LYS B 454 REMARK 465 GLN B 455 REMARK 465 LYS B 456 REMARK 465 HIS B 525 REMARK 465 ARG B 526 REMARK 465 LYS B 527 REMARK 465 HIS B 528 REMARK 465 THR B 529 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 753 HG SER A 757 1.46 REMARK 500 O SER A 601 HG1 THR A 605 1.55 REMARK 500 HO5' DG C 1 OP2 DA C 2 1.56 REMARK 500 O ASP B 467 H PHE B 470 1.57 REMARK 500 OD2 ASP A 436 H GLY A 439 1.58 REMARK 500 OD2 ASP A 319 HE ARG A 322 1.59 REMARK 500 O LEU A 636 HD22 ASN A 640 1.59 REMARK 500 OD1 ASP A 310 H GLU A 313 1.59 REMARK 500 OD2 ASP A 865 HG SER A 867 1.60 REMARK 500 OG1 THR B 466 OD1 ASP B 468 1.92 REMARK 500 OE2 GLU A 437 NH2 ARG A 441 2.11 REMARK 500 OE2 GLU A 72 N LYS B 457 2.12 REMARK 500 OE1 GLN A 186 N ILE A 231 2.15 REMARK 500 OD2 ASP A 319 NE ARG A 322 2.15 REMARK 500 O LEU A 636 ND2 ASN A 640 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU A 881 O1 TRS A 1002 3555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 29 -78.37 -53.43 REMARK 500 TYR A 50 44.18 -84.90 REMARK 500 LYS A 69 178.13 -56.19 REMARK 500 PHE A 185 32.92 -78.75 REMARK 500 LEU A 318 91.68 -62.00 REMARK 500 ASP A 319 100.11 -46.21 REMARK 500 ILE A 350 -142.00 -71.54 REMARK 500 TRP A 351 11.42 56.98 REMARK 500 ASN A 373 61.83 64.89 REMARK 500 ASN A 474 109.33 -170.56 REMARK 500 PRO A 592 167.64 -49.48 REMARK 500 ASP A 676 79.87 57.39 REMARK 500 GLN A 818 70.33 49.13 REMARK 500 ILE A 907 -86.66 -97.68 REMARK 500 GLU A 909 67.42 -58.50 REMARK 500 ARG B 405 -134.33 63.10 REMARK 500 ARG B 411 72.07 42.88 REMARK 500 ILE B 483 46.04 35.00 REMARK 500 HIS B 495 16.31 57.73 REMARK 500 LEU B 512 -177.04 -63.90 REMARK 500 SER B 521 56.58 -104.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5OQN RELATED DB: PDB DBREF 5OQO A 6 932 UNP Q06680 CND3_YEAST 6 932 DBREF 5OQO B 384 529 UNP P38170 CND2_YEAST 384 529 DBREF 5OQO C 1 18 PDB 5OQO 5OQO 1 18 DBREF 5OQO D 1 18 PDB 5OQO 5OQO 1 18 SEQADV 5OQO MET A 5 UNP Q06680 INITIATING METHIONINE SEQADV 5OQO A UNP Q06680 GLN 499 DELETION SEQADV 5OQO A UNP Q06680 GLU 500 DELETION SEQADV 5OQO A UNP Q06680 GLU 501 DELETION SEQADV 5OQO A UNP Q06680 LYS 502 DELETION SEQADV 5OQO A UNP Q06680 ILE 503 DELETION SEQADV 5OQO A UNP Q06680 LYS 504 DELETION SEQADV 5OQO A UNP Q06680 SER 505 DELETION SEQADV 5OQO A UNP Q06680 LYS 506 DELETION SEQADV 5OQO A UNP Q06680 LYS 507 DELETION SEQADV 5OQO A UNP Q06680 ILE 508 DELETION SEQADV 5OQO A UNP Q06680 ASN 509 DELETION SEQADV 5OQO A UNP Q06680 ARG 510 DELETION SEQADV 5OQO A UNP Q06680 ARG 511 DELETION SEQADV 5OQO A UNP Q06680 ASN 512 DELETION SEQADV 5OQO A UNP Q06680 GLU 513 DELETION SEQADV 5OQO A UNP Q06680 THR 514 DELETION SEQADV 5OQO A UNP Q06680 SER 515 DELETION SEQADV 5OQO A UNP Q06680 VAL 516 DELETION SEQADV 5OQO A UNP Q06680 ASP 517 DELETION SEQADV 5OQO A UNP Q06680 GLU 518 DELETION SEQADV 5OQO A UNP Q06680 GLU 519 DELETION SEQADV 5OQO A UNP Q06680 ASP 520 DELETION SEQADV 5OQO A UNP Q06680 GLU 521 DELETION SEQADV 5OQO A UNP Q06680 ASN 522 DELETION SEQADV 5OQO A UNP Q06680 GLY 523 DELETION SEQADV 5OQO A UNP Q06680 THR 524 DELETION SEQADV 5OQO A UNP Q06680 HIS 525 DELETION SEQADV 5OQO A UNP Q06680 ASN 526 DELETION SEQADV 5OQO A UNP Q06680 ASP 527 DELETION SEQADV 5OQO A UNP Q06680 GLU 528 DELETION SEQADV 5OQO A UNP Q06680 VAL 529 DELETION SEQADV 5OQO A UNP Q06680 ASN 530 DELETION SEQADV 5OQO A UNP Q06680 GLU 531 DELETION SEQADV 5OQO A UNP Q06680 ASP 532 DELETION SEQADV 5OQO A UNP Q06680 GLU 533 DELETION SEQADV 5OQO A UNP Q06680 GLU 534 DELETION SEQADV 5OQO A UNP Q06680 ASP 535 DELETION SEQADV 5OQO A UNP Q06680 ASP 536 DELETION SEQADV 5OQO A UNP Q06680 ASN 537 DELETION SEQADV 5OQO A UNP Q06680 ILE 538 DELETION SEQADV 5OQO A UNP Q06680 SER 539 DELETION SEQADV 5OQO A UNP Q06680 SER 540 DELETION SEQADV 5OQO A UNP Q06680 PHE 541 DELETION SEQADV 5OQO A UNP Q06680 HIS 542 DELETION SEQADV 5OQO A UNP Q06680 SER 543 DELETION SEQADV 5OQO A UNP Q06680 ALA 544 DELETION SEQADV 5OQO A UNP Q06680 VAL 545 DELETION SEQADV 5OQO A UNP Q06680 GLU 546 DELETION SEQADV 5OQO A UNP Q06680 ASN 547 DELETION SEQADV 5OQO A UNP Q06680 LEU 548 DELETION SEQADV 5OQO A UNP Q06680 VAL 549 DELETION SEQADV 5OQO A UNP Q06680 GLN 550 DELETION SEQADV 5OQO A UNP Q06680 GLY 551 DELETION SEQADV 5OQO A UNP Q06680 ASN 552 DELETION SEQADV 5OQO A UNP Q06680 GLY 553 DELETION SEQADV 5OQO A UNP Q06680 ASN 554 DELETION SEQADV 5OQO A UNP Q06680 VAL 555 DELETION SEQADV 5OQO GLY B 378 UNP P38170 EXPRESSION TAG SEQADV 5OQO PRO B 379 UNP P38170 EXPRESSION TAG SEQADV 5OQO LEU B 380 UNP P38170 EXPRESSION TAG SEQADV 5OQO GLY B 381 UNP P38170 EXPRESSION TAG SEQADV 5OQO HIS B 382 UNP P38170 EXPRESSION TAG SEQADV 5OQO MET B 383 UNP P38170 EXPRESSION TAG SEQRES 1 A 871 MET GLY ILE ASP ILE ASN THR LYS ILE PHE ASN SER VAL SEQRES 2 A 871 ALA GLU VAL PHE GLN LYS ALA GLN GLY SER TYR ALA GLY SEQRES 3 A 871 HIS ARG LYS HIS ILE ALA VAL LEU LYS LYS ILE GLN SER SEQRES 4 A 871 LYS ALA VAL GLU GLN GLY TYR GLU ASP ALA PHE ASN PHE SEQRES 5 A 871 TRP PHE ASP LYS LEU VAL THR LYS ILE LEU PRO LEU LYS SEQRES 6 A 871 LYS ASN GLU ILE ILE GLY ASP ARG ILE VAL LYS LEU VAL SEQRES 7 A 871 ALA ALA PHE ILE ALA SER LEU GLU ARG GLU LEU ILE LEU SEQRES 8 A 871 ALA LYS LYS GLN ASN TYR LYS LEU THR ASN ASP GLU GLU SEQRES 9 A 871 GLY ILE PHE SER ARG PHE VAL ASP GLN PHE ILE ARG HIS SEQRES 10 A 871 VAL LEU ARG GLY VAL GLU SER PRO ASP LYS ASN VAL ARG SEQRES 11 A 871 PHE ARG VAL LEU GLN LEU LEU ALA VAL ILE MET ASP ASN SEQRES 12 A 871 ILE GLY GLU ILE ASP GLU SER LEU PHE ASN LEU LEU ILE SEQRES 13 A 871 LEU SER LEU ASN LYS ARG ILE TYR ASP ARG GLU PRO THR SEQRES 14 A 871 VAL ARG ILE GLN ALA VAL PHE CYS LEU THR LYS PHE GLN SEQRES 15 A 871 ASP GLU GLU GLN THR GLU HIS LEU THR GLU LEU SER ASP SEQRES 16 A 871 ASN GLU GLU ASN PHE GLU ALA THR ARG THR LEU VAL ALA SEQRES 17 A 871 SER ILE GLN ASN ASP PRO SER ALA GLU VAL ARG ARG ALA SEQRES 18 A 871 ALA MET LEU ASN LEU ILE ASN ASP ASN ASN THR ARG PRO SEQRES 19 A 871 TYR ILE LEU GLU ARG ALA ARG ASP VAL ASN ILE VAL ASN SEQRES 20 A 871 ARG ARG LEU VAL TYR SER ARG ILE LEU LYS SER MET GLY SEQRES 21 A 871 ARG LYS CYS PHE ASP ASP ILE GLU PRO HIS ILE PHE ASP SEQRES 22 A 871 GLN LEU ILE GLU TRP GLY LEU GLU ASP ARG GLU LEU SER SEQRES 23 A 871 VAL ARG ASN ALA CYS LYS ARG LEU ILE ALA HIS ASP TRP SEQRES 24 A 871 LEU ASN ALA LEU ASP GLY ASP LEU ILE GLU LEU LEU GLU SEQRES 25 A 871 LYS LEU ASP VAL SER ARG SER SER VAL CYS VAL LYS ALA SEQRES 26 A 871 ILE GLU ALA LEU PHE GLN SER ARG PRO ASP ILE LEU SER SEQRES 27 A 871 LYS ILE LYS PHE PRO GLU SER ILE TRP LYS ASP PHE THR SEQRES 28 A 871 VAL GLU ILE ALA PHE LEU PHE ARG ALA ILE TYR LEU TYR SEQRES 29 A 871 CYS LEU ASP ASN ASN ILE THR GLU MET LEU GLU GLU ASN SEQRES 30 A 871 PHE PRO GLU ALA SER LYS LEU SER GLU HIS LEU ASN HIS SEQRES 31 A 871 TYR ILE LEU LEU ARG TYR HIS HIS ASN ASP ILE SER ASN SEQRES 32 A 871 ASP SER GLN SER HIS PHE ASP TYR ASN THR LEU GLU PHE SEQRES 33 A 871 ILE ILE GLU GLN LEU SER ILE ALA ALA GLU ARG TYR ASP SEQRES 34 A 871 TYR SER ASP GLU VAL GLY ARG ARG SER MET LEU THR VAL SEQRES 35 A 871 VAL ARG ASN MET LEU ALA LEU THR THR LEU SER GLU PRO SEQRES 36 A 871 LEU ILE LYS ILE GLY ILE ARG VAL MET LYS SER LEU SER SEQRES 37 A 871 ILE ASN GLU LYS ASP PHE VAL THR MET ALA ILE GLU ILE SEQRES 38 A 871 ILE ASN ASP ILE ARG ASP ASP ASP ILE GLU LYS GLN GLU SEQRES 39 A 871 SER GLU SER ASP ILE ILE ASN ASN LEU PRO PRO GLU LYS SEQRES 40 A 871 GLU ALA SER SER ALA THR ILE VAL LEU CYS LEU THR ARG SEQRES 41 A 871 SER SER TYR MET LEU GLU LEU VAL ASN THR PRO LEU THR SEQRES 42 A 871 GLU ASN ILE LEU ILE ALA SER LEU MET ASP THR LEU ILE SEQRES 43 A 871 THR PRO ALA VAL ARG ASN THR ALA PRO ASN ILE ARG GLU SEQRES 44 A 871 LEU GLY VAL LYS ASN LEU GLY LEU CYS CYS LEU LEU ASP SEQRES 45 A 871 VAL LYS LEU ALA ILE ASP ASN MET TYR ILE LEU GLY MET SEQRES 46 A 871 CYS VAL SER LYS GLY ASN ALA SER LEU LYS TYR ILE ALA SEQRES 47 A 871 LEU GLN VAL ILE VAL ASP ILE PHE SER VAL HIS GLY ASN SEQRES 48 A 871 THR VAL VAL ASP GLY GLU GLY LYS VAL ASP SER ILE SER SEQRES 49 A 871 LEU HIS LYS ILE PHE TYR LYS VAL LEU LYS ASN ASN GLY SEQRES 50 A 871 LEU PRO GLU CYS GLN VAL ILE ALA ALA GLU GLY LEU CYS SEQRES 51 A 871 LYS LEU PHE LEU ALA ASP VAL PHE THR ASP ASP ASP LEU SEQRES 52 A 871 PHE GLU THR LEU VAL LEU SER TYR PHE SER PRO ILE ASN SEQRES 53 A 871 SER SER ASN GLU ALA LEU VAL GLN ALA PHE ALA PHE CYS SEQRES 54 A 871 ILE PRO VAL TYR CYS PHE SER HIS PRO ALA HIS GLN GLN SEQRES 55 A 871 ARG MET SER ARG THR ALA ALA ASP ILE LEU LEU ARG LEU SEQRES 56 A 871 CYS VAL LEU TRP ASP ASP LEU GLN SER SER VAL ILE PRO SEQRES 57 A 871 GLU VAL ASP ARG GLU ALA MET LEU LYS PRO ASN ILE ILE SEQRES 58 A 871 PHE GLN GLN LEU LEU PHE TRP THR ASP PRO ARG ASN LEU SEQRES 59 A 871 VAL ASN GLN THR GLY SER THR LYS LYS ASP THR VAL GLN SEQRES 60 A 871 LEU THR PHE LEU ILE ASP VAL LEU LYS ILE TYR ALA GLN SEQRES 61 A 871 ILE GLU LYS LYS GLU ILE LYS LYS MET ILE ILE THR ASN SEQRES 62 A 871 ILE ASN ALA ILE PHE LEU SER SER GLU GLN ASP TYR SER SEQRES 63 A 871 THR LEU LYS GLU LEU LEU GLU TYR SER ASP ASP ILE ALA SEQRES 64 A 871 GLU ASN ASP ASN LEU ASP ASN VAL SER LYS ASN ALA LEU SEQRES 65 A 871 ASP LYS LEU ARG ASN ASN LEU ASN SER LEU ILE GLU GLU SEQRES 66 A 871 ILE ASN GLU ARG SER GLU THR GLN THR LYS ASP GLU ASN SEQRES 67 A 871 ASN THR ALA ASN ASP GLN TYR SER SER ILE LEU GLY ASN SEQRES 1 B 152 GLY PRO LEU GLY HIS MET SER ILE PHE GLU LYS ASP LEU SEQRES 2 B 152 MET ALA TYR PHE ASP GLU ASN LEU ASN ARG ASN TRP ARG SEQRES 3 B 152 GLY ARG GLU HIS TRP LYS VAL ARG ASN PHE LYS LYS ALA SEQRES 4 B 152 ASN LEU VAL ASN LYS GLU SER ASP LEU LEU GLU GLU THR SEQRES 5 B 152 ARG THR THR ILE GLY ASP THR THR ASP LYS ASN THR THR SEQRES 6 B 152 ASP ASP LYS SER MET ASP THR LYS LYS LYS HIS LYS GLN SEQRES 7 B 152 LYS LYS VAL LEU GLU ILE ASP PHE PHE LYS THR ASP ASP SEQRES 8 B 152 SER PHE GLU ASP LYS VAL PHE ALA SER LYS GLY ARG THR SEQRES 9 B 152 LYS ILE ASP MET PRO ILE LYS ASN ARG LYS ASN ASP THR SEQRES 10 B 152 HIS TYR LEU LEU PRO ASP ASP PHE HIS PHE SER THR ASP SEQRES 11 B 152 ARG ILE THR ARG LEU PHE ILE LYS PRO GLY GLN LYS MET SEQRES 12 B 152 SER LEU PHE SER HIS ARG LYS HIS THR SEQRES 1 C 18 DG DA DT DG DT DG DT DA DG DC DT DA DC SEQRES 2 C 18 DA DC DA DT DC SEQRES 1 D 18 DG DA DT DG DT DG DT DA DG DC DT DA DC SEQRES 2 D 18 DA DC DA DT DC HET TRS A1001 20 HET TRS A1002 20 HET PGE A1003 24 HET PGE A1004 24 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 5 TRS 2(C4 H12 N O3 1+) FORMUL 7 PGE 2(C6 H14 O4) HELIX 1 AA1 ASP A 8 GLN A 25 1 18 HELIX 2 AA2 GLY A 30 GLN A 48 1 19 HELIX 3 AA3 TYR A 50 THR A 63 1 14 HELIX 4 AA4 LYS A 64 LEU A 66 5 3 HELIX 5 AA5 GLU A 72 GLN A 99 1 28 HELIX 6 AA6 ASP A 106 ARG A 124 1 19 HELIX 7 AA7 ASP A 130 MET A 145 1 16 HELIX 8 AA8 ASP A 152 ILE A 167 1 16 HELIX 9 AA9 GLU A 171 PHE A 185 1 15 HELIX 10 AB1 ALA A 206 ASP A 217 1 12 HELIX 11 AB2 SER A 219 ASN A 229 1 11 HELIX 12 AB3 THR A 236 ARG A 243 1 8 HELIX 13 AB4 ALA A 244 ASP A 246 5 3 HELIX 14 AB5 ASN A 248 ARG A 258 1 11 HELIX 15 AB6 ARG A 258 GLY A 264 1 7 HELIX 16 AB7 ARG A 265 ASP A 270 1 6 HELIX 17 AB8 GLU A 272 ASP A 286 1 15 HELIX 18 AB9 GLU A 288 HIS A 301 1 14 HELIX 19 AC1 HIS A 301 LEU A 307 1 7 HELIX 20 AC2 ASP A 310 LEU A 318 1 9 HELIX 21 AC3 VAL A 325 ARG A 337 1 13 HELIX 22 AC4 ARG A 337 SER A 342 1 6 HELIX 23 AC5 THR A 355 ASN A 373 1 19 HELIX 24 AC6 ILE A 374 ASN A 381 1 8 HELIX 25 AC7 GLU A 384 HIS A 401 1 18 HELIX 26 AC8 SER A 411 GLU A 430 1 20 HELIX 27 AC9 ASP A 436 ALA A 452 1 17 HELIX 28 AD1 SER A 457 ILE A 473 1 17 HELIX 29 AD2 ASN A 474 GLN A 497 1 24 HELIX 30 AD3 SER A 571 LEU A 588 1 18 HELIX 31 AD4 ASN A 596 ARG A 612 1 17 HELIX 32 AD5 ALA A 615 LEU A 631 1 17 HELIX 33 AD6 ASP A 633 ASP A 639 1 7 HELIX 34 AD7 ASN A 640 GLY A 651 1 12 HELIX 35 AD8 ASN A 652 GLY A 671 1 20 HELIX 36 AD9 ASP A 682 ASN A 696 1 15 HELIX 37 AE1 LEU A 699 ALA A 716 1 18 HELIX 38 AE2 ASP A 721 SER A 734 1 14 HELIX 39 AE3 ILE A 736 SER A 739 5 4 HELIX 40 AE4 ASN A 740 HIS A 758 1 19 HELIX 41 AE5 HIS A 758 SER A 786 1 29 HELIX 42 AE6 LYS A 798 ASP A 811 1 14 HELIX 43 AE7 PRO A 812 LEU A 815 5 4 HELIX 44 AE8 GLY A 820 ASP A 825 5 6 HELIX 45 AE9 THR A 826 ALA A 840 1 15 HELIX 46 AF1 LYS A 844 THR A 853 1 10 HELIX 47 AF2 ASN A 854 ILE A 858 5 5 HELIX 48 AF3 ASP A 865 ASP A 883 1 19 HELIX 49 AF4 ASP A 886 ASN A 908 1 23 HELIX 50 AF5 SER B 384 LEU B 398 1 15 HELIX 51 AF6 GLY B 404 LYS B 409 5 6 HELIX 52 AF7 ASP B 468 PHE B 475 1 8 HELIX 53 AF8 SER B 505 ARG B 511 1 7 CISPEP 1 ARG B 411 ASN B 412 0 0.41 SITE 1 AC1 1 LYS A 184 SITE 1 AC2 3 ALA A 84 GLU A 881 ASN A 882 SITE 1 AC3 6 ASP A 59 GLN A 117 HIS A 121 ARG A 124 SITE 2 AC3 6 ASN A 652 GLU B 471 SITE 1 AC4 2 ASN A 10 TRP A 57 CRYST1 88.803 117.940 154.968 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011261 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006453 0.00000